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Normalized Counts Table (ENSG00000173638.19)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr21	45493571	45496379	TRUE	OK	148.4	0.00997	1.032e-14	2.12e-11	-1.549	-0.774	249.9	157.4	207.3	91.9	95.3	88.8
E002	chr21	45498200	45498345	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.361	0.2104	NA	NA	NA	0.9	1.0	0.0	0.0	0.0	0.0
E003	chr21	45498345	45498612	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E004	chr21	45502512	45502969	FALSE	LOW_COUNTS_INDEP_FILTER	2.5	0.058	0.06766	NA	NA	NA	0.9	1.0	1.1	4.0	2.1	6.1
E005	chr21	45503932	45504121	TRUE	OK	70.8	0.00292	2.164e-18	7.207e-15	-1.511	-0.755	100.7	97.0	95.3	43.5	46.1	42.4
E006	chr21	45512361	45512564	TRUE	OK	90.5	0.0141	1.762e-06	0.0005782	-1.137	-0.568	134.8	104.9	103.1	78.1	51.3	70.6
E007	chr21	45512564	45512824	TRUE	OK	133.4	0.00522	0.1002	0.6355	-0.264	-0.132	150.1	123.7	114.2	124.5	166.6	121.0
E008	chr21	45512824	45512898	TRUE	OK	104.4	0.0132	0.352	0.792	-0.197	-0.098	118.6	91.1	87.6	90.9	148.7	89.8
E009	chr21	45512898	45513418	TRUE	OK	267.6	0.0144	0.08707	0.6156	-0.326	-0.163	267.8	263.3	263.8	210.5	375.0	224.9
E010	chr21	45513418	45513558	TRUE	OK	146.5	0.00872	0.2139	0.7319	-0.225	-0.113	137.3	162.3	121.9	133.4	188.6	135.2
E011	chr21	45513558	45514714	TRUE	OK	353.0	0.00829	0.009041	0.2741	0.446	0.223	280.6	281.1	232.8	397.3	548.9	377.3
E012	chr21	45514714	45514895	TRUE	OK	220.2	0.00863	0.0003421	0.03815	0.651	0.325	163.8	145.5	141.9	260.9	372.9	236.0
E013	chr21	45514895	45515133	TRUE	OK	372.3	0.0126	0.1513	0.6894	0.311	0.155	297.7	313.8	272.7	420.0	582.4	347.0
E014	chr21	45515133	45515152	TRUE	OK	203.4	0.0131	0.4752	0.8385	0.163	0.082	178.3	188.1	141.9	232.2	298.5	181.6
E015	chr21	45515152	45515517	TRUE	OK	580.3	0.00343	0.000418	0.04386	0.397	0.199	458.0	473.1	414.6	657.2	819.2	659.7
E016	chr21	45515517	45515639	TRUE	OK	357.3	0.00133	0.005968	0.2221	0.245	0.122	302.8	280.1	286.0	392.3	455.7	426.7
E017	chr21	45515639	45515768	TRUE	OK	404.3	0.0019	0.05339	0.5427	0.182	0.091	344.6	320.7	343.6	462.5	472.4	482.2
E018	chr21	45515768	45516140	TRUE	OK	731.7	0.00445	0.2942	0.7688	0.121	0.061	644.0	556.3	674.0	867.7	835.9	812.0
E019	chr21	45525816	45525958	TRUE	OK	462.4	0.00426	0.6104	0.8871	-0.066	-0.033	429.9	397.9	430.1	542.6	484.0	490.2
E020	chr21	45530769	45530971	TRUE	OK	505.4	0.00272	0.8771	0.9697	-0.021	-0.011	479.4	421.7	452.3	563.3	548.9	566.9
E021	chr21	45531388	45531541	TRUE	OK	429.8	0.00576	0.6495	0.9006	0.059	0.029	403.5	346.4	370.3	495.1	449.4	514.4
E022	chr21	45531541	45531790	TRUE	OK	426.8	0.0175	0.7231	0.9247	-0.082	-0.041	443.5	377.1	345.9	507.0	375.0	512.4
E023	chr21	45531790	45531873	TRUE	OK	236.3	0.0155	0.3652	0.7968	-0.200	-0.100	251.6	222.7	199.5	283.6	199.0	261.3
E024	chr21	45531873	45532148	TRUE	OK	388.0	0.0124	0.1402	0.6794	-0.286	-0.143	391.5	364.2	379.1	448.7	328.9	415.6
E025	chr21	45534537	45534706	TRUE	OK	7.6	0.118	0.5915	0.8805	-0.421	-0.211	13.6	4.0	5.5	5.9	3.1	13.1
E026	chr21	45535983	45536528	TRUE	OK	15.4	0.0291	0.6289	0.8937	0.175	0.088	14.5	17.8	5.5	20.8	15.7	18.2
E027	chr21	45537770	45537777	TRUE	OK	165.2	0.00924	0.2908	0.7673	-0.197	-0.098	167.2	153.4	150.8	193.7	145.6	180.6
E028	chr21	45537777	45537933	TRUE	OK	312.0	0.00702	0.5779	0.8759	0.084	0.042	279.8	244.5	281.6	374.6	318.4	373.2
E029	chr21	45537933	45538008	TRUE	OK	197.4	0.00905	0.3367	0.786	0.168	0.084	179.1	136.6	177.4	219.4	210.6	261.3
E030	chr21	45541786	45541838	TRUE	OK	10.4	0.014	0.1546	0.6922	-0.593	-0.297	10.2	11.9	12.2	8.9	7.3	12.1
E031	chr21	45542367	45542440	TRUE	OK	116.0	0.00947	0.4289	0.8216	0.149	0.074	105.8	78.2	107.5	131.4	120.5	152.3
E032	chr21	45542440	45542471	TRUE	OK	12.3	0.0137	0.9349	0.985	-0.035	-0.018	9.4	13.9	10.0	15.8	10.5	14.1
E033	chr21	45543776	45543859	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E034	chr21	45544136	45544400	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E035	chr21	45544400	45544402	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E036	chr21	45544402	45544411	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E037	chr21	45562220	45562741	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E038	chr21	45562741	45562957	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E039	chr21	45562957	45563115	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E040	chr21	45573240	45573365	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J041	chr21	45496379	45498345	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J042	chr21	45498612	45525816	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J043	chr21	45502969	45503932	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J044	chr21	45512898	45513418	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.0647	0.08556	NA	NA	NA	0.9	1.0	0.0	4.9	3.1	1.0
J045	chr21	45513558	45514895	TRUE	OK	5.6	0.0168	0.01674	0.3616	-1.332	-0.666	8.5	5.9	7.8	4.0	5.2	2.0
J046	chr21	45515152	45515639	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.164	0.7012	NA	NA	NA	0.0	0.0	1.1	1.0	0.0	1.0
J047	chr21	45515152	45525816	TRUE	OK	9.1	0.109	0.5566	0.8682	-0.397	-0.199	4.3	14.8	8.9	12.8	10.5	3.0
J048	chr21	45516140	45525816	TRUE	OK	278.9	0.00693	0.3165	0.7778	-0.160	-0.080	276.4	235.6	272.7	333.1	271.3	284.5
J049	chr21	45525958	45530769	TRUE	OK	243.3	0.00344	0.5422	0.863	-0.082	-0.041	238.0	213.8	213.9	274.7	248.3	271.3
J050	chr21	45530971	45531388	TRUE	OK	265.1	0.00112	0.4916	0.8444	0.061	0.031	240.5	211.8	237.2	298.5	309.0	293.5
J051	chr21	45532148	45534537	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.129	0.03319	NA	NA	NA	0.9	1.0	2.2	0.0	0.0	0.0
J052	chr21	45532148	45537770	TRUE	OK	147.0	0.00472	0.1883	0.7162	-0.203	-0.102	148.4	133.6	138.6	169.0	138.3	154.3
J053	chr21	45536528	45537770	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J054	chr21	45538008	45541786	FALSE	LOW_COUNTS_INDEP_FILTER	2.8	0.0418	0.145	NA	NA	NA	2.6	4.0	4.4	0.0	2.1	4.0
J055	chr21	45538008	45542367	TRUE	OK	112.6	0.00817	0.3715	0.7993	0.162	0.081	102.4	76.2	103.1	128.5	118.4	147.3
J056	chr21	45538008	45543776	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J057	chr21	45538008	45544136	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J058	chr21	45538008	45562741	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J059	chr21	45543859	45544136	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J060	chr21	45562957	45573240	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
N061	chr21	45493575	45494544	TRUE	OK	76.5	0.017	5.444e-09	3.699e-06	-1.565	-0.782	128.8	71.3	119.7	47.4	47.1	44.4
N062	chr21	45494571	45494861	TRUE	OK	82.3	0.0124	4.832e-13	7.454e-10	-1.719	-0.859	140.7	84.1	129.7	45.5	50.3	43.4
N063	chr21	45494915	45495357	TRUE	OK	95.5	0.00479	1.918e-22	8.972e-19	-1.705	-0.852	159.5	112.8	137.5	54.4	58.7	50.4
N064	chr21	45495432	45496499	TRUE	OK	72.9	0.0114	8.884e-11	9.435e-08	-1.521	-0.760	127.9	84.1	89.8	51.4	45.0	39.3
N065	chr21	45496568	45497049	TRUE	OK	74.0	0.00591	4.93e-17	1.372e-13	-1.645	-0.822	126.2	87.1	100.9	44.5	47.1	38.3
N066	chr21	45497092	45497598	TRUE	OK	65.0	0.00246	1.175e-21	5.164e-18	-1.682	-0.841	101.5	90.1	86.5	34.6	41.9	35.3
N067	chr21	45497661	45504010	TRUE	OK	58.5	0.00246	1.191e-19	4.593e-16	-1.658	-0.829	89.6	80.2	79.8	32.6	36.7	32.3
N068	chr21	45504054	45504415	TRUE	OK	59.0	0.00277	9.918e-15	2.047e-11	-1.412	-0.706	77.6	85.1	76.5	35.6	39.8	39.3
N069	chr21	45504556	45505133	TRUE	OK	67.1	0.00559	1.323e-07	6.336e-05	-1.020	-0.510	82.7	73.2	92.0	62.3	49.2	43.4
N070	chr21	45505278	45505357	TRUE	OK	33.8	0.0525	0.01704	0.3641	-1.069	-0.535	61.4	32.7	32.1	37.6	16.8	22.2
N071	chr21	45505431	45505837	TRUE	OK	23.9	0.0301	4.157e-05	0.007624	-1.602	-0.801	43.5	28.7	28.8	20.8	8.4	13.1
N072	chr21	45505966	45507560	TRUE	OK	46.7	0.00813	1.094e-07	5.392e-05	-1.243	-0.621	49.5	71.3	62.1	31.6	34.6	31.3
N073	chr21	45507593	45509355	TRUE	OK	51.9	0.00463	1.439e-08	8.887e-06	-1.151	-0.575	56.3	71.3	70.9	33.6	39.8	39.3
N074	chr21	45509601	45510063	TRUE	OK	32.8	0.00478	2.129e-08	1.253e-05	-1.357	-0.679	43.5	38.6	49.9	24.7	25.1	15.1
N075	chr21	45510261	45511110	TRUE	OK	57.6	0.00333	8.062e-15	1.696e-11	-1.468	-0.734	76.8	71.3	88.7	28.7	41.9	38.3
N076	chr21	45511226	45512187	TRUE	OK	55.3	0.00252	1.689e-10	1.659e-07	-1.169	-0.585	72.5	69.3	69.8	34.6	45.0	40.3
N077	chr21	45532148	45537766	TRUE	OK	11.2	0.0482	0.8231	0.9542	-0.096	-0.048	11.1	11.9	7.8	13.8	5.2	17.1

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000173638.19
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE