| << | < Prev Gene | TOP | Next Gene > | >> | |
| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr21 | 45493571 | 45496379 | TRUE | OK | 148.4 | 0.00997 | 1.032e-14 | 2.12e-11 | -1.549 | -0.774 | 293.0 | 159.0 | 187.0 | 93.0 | 91.0 | 88.0 |
| E002 | chr21 | 45498200 | 45498345 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.361 | 0.2104 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E003 | chr21 | 45498345 | 45498612 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E004 | chr21 | 45502512 | 45502969 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.058 | 0.06766 | NA | NA | NA | 1.0 | 1.0 | 1.0 | 4.0 | 2.0 | 6.0 |
| E005 | chr21 | 45503932 | 45504121 | TRUE | OK | 70.8 | 0.00292 | 2.164e-18 | 7.207e-15 | -1.511 | -0.755 | 118.0 | 98.0 | 86.0 | 44.0 | 44.0 | 42.0 |
| E006 | chr21 | 45512361 | 45512564 | TRUE | OK | 90.5 | 0.0141 | 1.762e-06 | 0.0005782 | -1.137 | -0.568 | 158.0 | 106.0 | 93.0 | 79.0 | 49.0 | 70.0 |
| E007 | chr21 | 45512564 | 45512824 | TRUE | OK | 133.4 | 0.00522 | 0.1002 | 0.6355 | -0.264 | -0.132 | 176.0 | 125.0 | 103.0 | 126.0 | 159.0 | 120.0 |
| E008 | chr21 | 45512824 | 45512898 | TRUE | OK | 104.4 | 0.0132 | 0.352 | 0.792 | -0.197 | -0.098 | 139.0 | 92.0 | 79.0 | 92.0 | 142.0 | 89.0 |
| E009 | chr21 | 45512898 | 45513418 | TRUE | OK | 267.6 | 0.0144 | 0.08707 | 0.6156 | -0.326 | -0.163 | 314.0 | 266.0 | 238.0 | 213.0 | 358.0 | 223.0 |
| E010 | chr21 | 45513418 | 45513558 | TRUE | OK | 146.5 | 0.00872 | 0.2139 | 0.7319 | -0.225 | -0.113 | 161.0 | 164.0 | 110.0 | 135.0 | 180.0 | 134.0 |
| E011 | chr21 | 45513558 | 45514714 | TRUE | OK | 353.0 | 0.00829 | 0.009041 | 0.2741 | 0.446 | 0.223 | 329.0 | 284.0 | 210.0 | 402.0 | 524.0 | 374.0 |
| E012 | chr21 | 45514714 | 45514895 | TRUE | OK | 220.2 | 0.00863 | 0.0003421 | 0.03815 | 0.651 | 0.325 | 192.0 | 147.0 | 128.0 | 264.0 | 356.0 | 234.0 |
| E013 | chr21 | 45514895 | 45515133 | TRUE | OK | 372.3 | 0.0126 | 0.1513 | 0.6894 | 0.311 | 0.155 | 349.0 | 317.0 | 246.0 | 425.0 | 556.0 | 344.0 |
| E014 | chr21 | 45515133 | 45515152 | TRUE | OK | 203.4 | 0.0131 | 0.4752 | 0.8385 | 0.163 | 0.082 | 209.0 | 190.0 | 128.0 | 235.0 | 285.0 | 180.0 |
| E015 | chr21 | 45515152 | 45515517 | TRUE | OK | 580.3 | 0.00343 | 0.000418 | 0.04386 | 0.397 | 0.199 | 537.0 | 478.0 | 374.0 | 665.0 | 782.0 | 654.0 |
| E016 | chr21 | 45515517 | 45515639 | TRUE | OK | 357.3 | 0.00133 | 0.005968 | 0.2221 | 0.245 | 0.122 | 355.0 | 283.0 | 258.0 | 397.0 | 435.0 | 423.0 |
| E017 | chr21 | 45515639 | 45515768 | TRUE | OK | 404.3 | 0.0019 | 0.05339 | 0.5427 | 0.182 | 0.091 | 404.0 | 324.0 | 310.0 | 468.0 | 451.0 | 478.0 |
| E018 | chr21 | 45515768 | 45516140 | TRUE | OK | 731.7 | 0.00445 | 0.2942 | 0.7688 | 0.121 | 0.061 | 755.0 | 562.0 | 608.0 | 878.0 | 798.0 | 805.0 |
| E019 | chr21 | 45525816 | 45525958 | TRUE | OK | 462.4 | 0.00426 | 0.6104 | 0.8871 | -0.066 | -0.033 | 504.0 | 402.0 | 388.0 | 549.0 | 462.0 | 486.0 |
| E020 | chr21 | 45530769 | 45530971 | TRUE | OK | 505.4 | 0.00272 | 0.8771 | 0.9697 | -0.021 | -0.011 | 562.0 | 426.0 | 408.0 | 570.0 | 524.0 | 562.0 |
| E021 | chr21 | 45531388 | 45531541 | TRUE | OK | 429.8 | 0.00576 | 0.6495 | 0.9006 | 0.059 | 0.029 | 473.0 | 350.0 | 334.0 | 501.0 | 429.0 | 510.0 |
| E022 | chr21 | 45531541 | 45531790 | TRUE | OK | 426.8 | 0.0175 | 0.7231 | 0.9247 | -0.082 | -0.041 | 520.0 | 381.0 | 312.0 | 513.0 | 358.0 | 508.0 |
| E023 | chr21 | 45531790 | 45531873 | TRUE | OK | 236.3 | 0.0155 | 0.3652 | 0.7968 | -0.200 | -0.100 | 295.0 | 225.0 | 180.0 | 287.0 | 190.0 | 259.0 |
| E024 | chr21 | 45531873 | 45532148 | TRUE | OK | 388.0 | 0.0124 | 0.1402 | 0.6794 | -0.286 | -0.143 | 459.0 | 368.0 | 342.0 | 454.0 | 314.0 | 412.0 |
| E025 | chr21 | 45534537 | 45534706 | TRUE | OK | 7.6 | 0.118 | 0.5915 | 0.8805 | -0.421 | -0.211 | 16.0 | 4.0 | 5.0 | 6.0 | 3.0 | 13.0 |
| E026 | chr21 | 45535983 | 45536528 | TRUE | OK | 15.4 | 0.0291 | 0.6289 | 0.8937 | 0.175 | 0.088 | 17.0 | 18.0 | 5.0 | 21.0 | 15.0 | 18.0 |
| E027 | chr21 | 45537770 | 45537777 | TRUE | OK | 165.2 | 0.00924 | 0.2908 | 0.7673 | -0.197 | -0.098 | 196.0 | 155.0 | 136.0 | 196.0 | 139.0 | 179.0 |
| E028 | chr21 | 45537777 | 45537933 | TRUE | OK | 312.0 | 0.00702 | 0.5779 | 0.8759 | 0.084 | 0.042 | 328.0 | 247.0 | 254.0 | 379.0 | 304.0 | 370.0 |
| E029 | chr21 | 45537933 | 45538008 | TRUE | OK | 197.4 | 0.00905 | 0.3367 | 0.786 | 0.168 | 0.084 | 210.0 | 138.0 | 160.0 | 222.0 | 201.0 | 259.0 |
| E030 | chr21 | 45541786 | 45541838 | TRUE | OK | 10.4 | 0.014 | 0.1546 | 0.6922 | -0.593 | -0.297 | 12.0 | 12.0 | 11.0 | 9.0 | 7.0 | 12.0 |
| E031 | chr21 | 45542367 | 45542440 | TRUE | OK | 116.0 | 0.00947 | 0.4289 | 0.8216 | 0.149 | 0.074 | 124.0 | 79.0 | 97.0 | 133.0 | 115.0 | 151.0 |
| E032 | chr21 | 45542440 | 45542471 | TRUE | OK | 12.3 | 0.0137 | 0.9349 | 0.985 | -0.035 | -0.018 | 11.0 | 14.0 | 9.0 | 16.0 | 10.0 | 14.0 |
| E033 | chr21 | 45543776 | 45543859 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E034 | chr21 | 45544136 | 45544400 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E035 | chr21 | 45544400 | 45544402 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E036 | chr21 | 45544402 | 45544411 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E037 | chr21 | 45562220 | 45562741 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E038 | chr21 | 45562741 | 45562957 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E039 | chr21 | 45562957 | 45563115 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E040 | chr21 | 45573240 | 45573365 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J041 | chr21 | 45496379 | 45498345 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J042 | chr21 | 45498612 | 45525816 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J043 | chr21 | 45502969 | 45503932 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J044 | chr21 | 45512898 | 45513418 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0647 | 0.08556 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 5.0 | 3.0 | 1.0 |
| J045 | chr21 | 45513558 | 45514895 | TRUE | OK | 5.6 | 0.0168 | 0.01674 | 0.3616 | -1.332 | -0.666 | 10.0 | 6.0 | 7.0 | 4.0 | 5.0 | 2.0 |
| J046 | chr21 | 45515152 | 45515639 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.164 | 0.7012 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 1.0 | 0.0 | 1.0 |
| J047 | chr21 | 45515152 | 45525816 | TRUE | OK | 9.1 | 0.109 | 0.5566 | 0.8682 | -0.397 | -0.199 | 5.0 | 15.0 | 8.0 | 13.0 | 10.0 | 3.0 |
| J048 | chr21 | 45516140 | 45525816 | TRUE | OK | 278.9 | 0.00693 | 0.3165 | 0.7778 | -0.160 | -0.080 | 324.0 | 238.0 | 246.0 | 337.0 | 259.0 | 282.0 |
| J049 | chr21 | 45525958 | 45530769 | TRUE | OK | 243.3 | 0.00344 | 0.5422 | 0.863 | -0.082 | -0.041 | 279.0 | 216.0 | 193.0 | 278.0 | 237.0 | 269.0 |
| J050 | chr21 | 45530971 | 45531388 | TRUE | OK | 265.1 | 0.00112 | 0.4916 | 0.8444 | 0.061 | 0.031 | 282.0 | 214.0 | 214.0 | 302.0 | 295.0 | 291.0 |
| J051 | chr21 | 45532148 | 45534537 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.129 | 0.03319 | NA | NA | NA | 1.0 | 1.0 | 2.0 | 0.0 | 0.0 | 0.0 |
| J052 | chr21 | 45532148 | 45537770 | TRUE | OK | 147.0 | 0.00472 | 0.1883 | 0.7162 | -0.203 | -0.102 | 174.0 | 135.0 | 125.0 | 171.0 | 132.0 | 153.0 |
| J053 | chr21 | 45536528 | 45537770 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J054 | chr21 | 45538008 | 45541786 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.8 | 0.0418 | 0.145 | NA | NA | NA | 3.0 | 4.0 | 4.0 | 0.0 | 2.0 | 4.0 |
| J055 | chr21 | 45538008 | 45542367 | TRUE | OK | 112.6 | 0.00817 | 0.3715 | 0.7993 | 0.162 | 0.081 | 120.0 | 77.0 | 93.0 | 130.0 | 113.0 | 146.0 |
| J056 | chr21 | 45538008 | 45543776 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J057 | chr21 | 45538008 | 45544136 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J058 | chr21 | 45538008 | 45562741 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J059 | chr21 | 45543859 | 45544136 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J060 | chr21 | 45562957 | 45573240 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| N061 | chr21 | 45493575 | 45494544 | TRUE | OK | 76.5 | 0.017 | 5.444e-09 | 3.699e-06 | -1.565 | -0.782 | 151.0 | 72.0 | 108.0 | 48.0 | 45.0 | 44.0 |
| N062 | chr21 | 45494571 | 45494861 | TRUE | OK | 82.3 | 0.0124 | 4.832e-13 | 7.454e-10 | -1.719 | -0.859 | 165.0 | 85.0 | 117.0 | 46.0 | 48.0 | 43.0 |
| N063 | chr21 | 45494915 | 45495357 | TRUE | OK | 95.5 | 0.00479 | 1.918e-22 | 8.972e-19 | -1.705 | -0.852 | 187.0 | 114.0 | 124.0 | 55.0 | 56.0 | 50.0 |
| N064 | chr21 | 45495432 | 45496499 | TRUE | OK | 72.9 | 0.0114 | 8.884e-11 | 9.435e-08 | -1.521 | -0.760 | 150.0 | 85.0 | 81.0 | 52.0 | 43.0 | 39.0 |
| N065 | chr21 | 45496568 | 45497049 | TRUE | OK | 74.0 | 0.00591 | 4.93e-17 | 1.372e-13 | -1.645 | -0.822 | 148.0 | 88.0 | 91.0 | 45.0 | 45.0 | 38.0 |
| N066 | chr21 | 45497092 | 45497598 | TRUE | OK | 65.0 | 0.00246 | 1.175e-21 | 5.164e-18 | -1.682 | -0.841 | 119.0 | 91.0 | 78.0 | 35.0 | 40.0 | 35.0 |
| N067 | chr21 | 45497661 | 45504010 | TRUE | OK | 58.5 | 0.00246 | 1.191e-19 | 4.593e-16 | -1.658 | -0.829 | 105.0 | 81.0 | 72.0 | 33.0 | 35.0 | 32.0 |
| N068 | chr21 | 45504054 | 45504415 | TRUE | OK | 59.0 | 0.00277 | 9.918e-15 | 2.047e-11 | -1.412 | -0.706 | 91.0 | 86.0 | 69.0 | 36.0 | 38.0 | 39.0 |
| N069 | chr21 | 45504556 | 45505133 | TRUE | OK | 67.1 | 0.00559 | 1.323e-07 | 6.336e-05 | -1.020 | -0.510 | 97.0 | 74.0 | 83.0 | 63.0 | 47.0 | 43.0 |
| N070 | chr21 | 45505278 | 45505357 | TRUE | OK | 33.8 | 0.0525 | 0.01704 | 0.3641 | -1.069 | -0.535 | 72.0 | 33.0 | 29.0 | 38.0 | 16.0 | 22.0 |
| N071 | chr21 | 45505431 | 45505837 | TRUE | OK | 23.9 | 0.0301 | 4.157e-05 | 0.007624 | -1.602 | -0.801 | 51.0 | 29.0 | 26.0 | 21.0 | 8.0 | 13.0 |
| N072 | chr21 | 45505966 | 45507560 | TRUE | OK | 46.7 | 0.00813 | 1.094e-07 | 5.392e-05 | -1.243 | -0.621 | 58.0 | 72.0 | 56.0 | 32.0 | 33.0 | 31.0 |
| N073 | chr21 | 45507593 | 45509355 | TRUE | OK | 51.9 | 0.00463 | 1.439e-08 | 8.887e-06 | -1.151 | -0.575 | 66.0 | 72.0 | 64.0 | 34.0 | 38.0 | 39.0 |
| N074 | chr21 | 45509601 | 45510063 | TRUE | OK | 32.8 | 0.00478 | 2.129e-08 | 1.253e-05 | -1.357 | -0.679 | 51.0 | 39.0 | 45.0 | 25.0 | 24.0 | 15.0 |
| N075 | chr21 | 45510261 | 45511110 | TRUE | OK | 57.6 | 0.00333 | 8.062e-15 | 1.696e-11 | -1.468 | -0.734 | 90.0 | 72.0 | 80.0 | 29.0 | 40.0 | 38.0 |
| N076 | chr21 | 45511226 | 45512187 | TRUE | OK | 55.3 | 0.00252 | 1.689e-10 | 1.659e-07 | -1.169 | -0.585 | 85.0 | 70.0 | 63.0 | 35.0 | 43.0 | 40.0 |
| N077 | chr21 | 45532148 | 45537766 | TRUE | OK | 11.2 | 0.0482 | 0.8231 | 0.9542 | -0.096 | -0.048 | 13.0 | 12.0 | 7.0 | 14.0 | 5.0 | 17.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000173638.19 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |