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Normalized Counts Table (ENSG00000137936.18)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr1	93561740	93561785	FALSE	LOW_COUNTS_INDEP_FILTER	2.9	0.272	0.8838	NA	NA	NA	4.3	3.0	0.0	4.9	5.2	0.0
E002	chr1	93561785	93561786	TRUE	OK	3.3	0.0636	0.5301	0.8587	-0.475	-0.237	4.3	3.0	3.3	4.9	4.2	0.0
E003	chr1	93561786	93561790	TRUE	OK	4.6	0.0348	0.7794	0.9418	-0.184	-0.092	6.0	4.0	3.3	6.9	5.2	2.0
E004	chr1	93561790	93561793	TRUE	OK	9.1	0.0307	0.8667	0.9668	0.083	0.042	10.2	6.9	6.7	8.9	15.7	6.1
E005	chr1	93561793	93562120	TRUE	OK	333.5	0.0194	0.2862	0.7651	0.290	0.145	288.3	276.2	255.0	336.0	529.0	316.7
E006	chr1	93562120	93562419	TRUE	OK	888.8	0.0161	0.8715	0.9681	0.061	0.030	843.6	762.1	781.5	793.6	1268.6	883.6
E007	chr1	93567278	93567491	TRUE	OK	927.1	0.00661	0.3055	0.7733	-0.140	-0.070	928.9	863.1	865.8	873.6	1129.2	901.8
E008	chr1	93567739	93567851	TRUE	OK	649.4	0.00334	0.1244	0.6647	-0.167	-0.083	653.4	632.5	595.3	646.3	731.2	637.5
E009	chr1	93567851	93568127	TRUE	OK	19.5	0.0114	0.05004	0.5328	0.646	0.323	11.9	13.9	15.5	29.6	17.8	28.2
E010	chr1	93571669	93571841	TRUE	OK	751.7	0.00189	0.03499	0.4769	-0.183	-0.091	745.5	750.3	691.7	770.9	779.4	772.7
E011	chr1	93576013	93576129	TRUE	OK	694.9	0.0021	0.02975	0.4511	-0.196	-0.098	661.9	709.7	661.8	705.6	709.2	721.2
E012	chr1	93582300	93582953	TRUE	OK	1590.1	0.00113	0.0001241	0.01798	-0.250	-0.125	1596.8	1535.2	1549.7	1550.6	1540.9	1767.2
E013	chr1	93584017	93584121	TRUE	OK	543.1	0.00982	0.03723	0.4868	-0.354	-0.177	622.7	511.7	538.8	556.4	419.0	610.3
E014	chr1	93584971	93585082	TRUE	OK	10.9	0.0193	1.937e-10	1.872e-07	-3.308	-1.654	23.0	21.8	13.3	4.0	2.1	1.0
E015	chr1	93585082	93585101	TRUE	OK	4.0	0.107	0.1001	0.6353	-1.480	-0.740	2.6	10.9	3.3	3.0	2.1	2.0
E016	chr1	93588976	93589082	TRUE	OK	544.3	0.0111	0.07815	0.5993	-0.313	-0.157	609.0	534.5	512.1	584.1	418.0	608.2
E017	chr1	93589082	93589419	TRUE	OK	763.5	0.00705	0.001051	0.0807	-0.476	-0.238	880.3	770.1	780.4	740.2	592.9	817.0
E018	chr1	93590248	93590378	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.569	0.9039	NA	NA	NA	0.0	0.0	2.2	0.0	0.0	2.0
E019	chr1	93592264	93592305	TRUE	OK	317.4	0.00493	0.001025	0.07951	-0.448	-0.224	381.3	299.9	329.2	306.4	259.8	327.8
E020	chr1	93592305	93592393	TRUE	OK	441.2	0.00479	0.000946	0.07559	-0.428	-0.214	505.8	407.8	480.0	420.0	365.6	468.0
E021	chr1	93613846	93614097	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.0773	0.07621	NA	NA	NA	3.4	2.0	3.3	0.0	0.0	3.0
E022	chr1	93642303	93642343	TRUE	OK	352.0	0.00255	1.022e-05	0.002483	-0.469	-0.234	387.2	343.5	398.0	330.1	296.4	357.1
E023	chr1	93646476	93646574	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.0904	0.2548	NA	NA	NA	0.9	0.0	1.1	2.0	1.0	3.0
E024	chr1	93648727	93648822	FALSE	LOW_COUNTS_INDEP_FILTER	1.4	0.136	0.6625	NA	NA	NA	2.6	2.0	0.0	1.0	0.0	3.0
E025	chr1	93674613	93674941	TRUE	OK	686.7	0.00869	0.04437	0.515	-0.317	-0.158	717.3	653.3	717.2	728.4	544.7	759.6
E026	chr1	93681106	93681370	TRUE	OK	6.3	0.0807	0.9546	0.99	0.124	0.062	6.0	4.9	5.5	1.0	9.4	11.1
E027	chr1	93681597	93681837	TRUE	OK	350.7	0.0117	0.7928	0.9456	-0.035	-0.017	339.5	324.7	309.3	420.0	286.0	424.7
E028	chr1	93706091	93706142	TRUE	OK	16.3	0.00916	0.3584	0.7946	-0.308	-0.154	16.2	14.8	18.8	17.8	15.7	14.1
E029	chr1	93720188	93720294	TRUE	OK	15.8	0.0543	0.3744	0.8003	-0.492	-0.246	21.3	22.8	6.7	13.8	18.9	11.1
E030	chr1	93723298	93723536	TRUE	OK	25.8	0.0452	0.4125	0.8154	-0.348	-0.174	29.0	15.8	35.5	30.6	13.6	30.3
E031	chr1	93752923	93753102	TRUE	OK	256.1	0.00399	0.1455	0.6843	0.180	0.090	247.4	183.1	225.0	298.5	289.1	293.5
E032	chr1	93753102	93754346	TRUE	OK	2058.7	0.000844	1.377e-22	6.51e-19	0.561	0.280	1696.6	1544.1	1550.9	2406.5	2473.2	2681.1
E033	chr1	93775196	93775444	TRUE	OK	644.2	0.0018	0.0248	0.4219	0.192	0.096	577.5	503.8	568.7	707.6	694.5	813.0
E034	chr1	93827614	93827687	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E035	chr1	93845566	93845712	TRUE	OK	20.6	0.00828	0.2897	0.7666	-0.323	-0.162	24.7	22.8	15.5	20.8	17.8	22.2
E036	chr1	93846964	93847044	TRUE	OK	3.6	0.0537	0.7732	0.94	-0.194	-0.097	3.4	3.0	4.4	6.9	2.1	2.0
E037	chr1	93847069	93847150	TRUE	OK	11.6	0.0132	0.4332	0.8232	0.312	0.156	10.2	8.9	8.9	15.8	9.4	16.1
J038	chr1	93562419	93567278	TRUE	OK	469.6	0.0118	0.5275	0.8578	-0.102	-0.051	472.5	413.7	446.7	395.3	621.2	468.0
J039	chr1	93567491	93567739	TRUE	OK	451.4	0.00431	0.09225	0.6243	-0.211	-0.105	469.1	450.4	409.1	458.6	498.6	422.6
J040	chr1	93567851	93571669	TRUE	OK	400.3	0.00105	0.09057	0.6215	-0.140	-0.070	394.9	373.2	383.6	412.1	429.5	408.5
J041	chr1	93571841	93576013	TRUE	OK	384.9	0.00294	0.01367	0.3318	-0.274	-0.137	394.1	417.7	345.9	383.5	376.1	392.4
J042	chr1	93576129	93582300	TRUE	OK	460.7	0.00113	0.04967	0.5318	-0.158	-0.079	432.5	456.3	445.6	470.4	470.3	489.2
J043	chr1	93582953	93584017	TRUE	OK	345.3	0.00943	0.08794	0.6173	-0.298	-0.149	403.5	333.6	310.4	363.7	277.6	383.3
J044	chr1	93584121	93584971	TRUE	OK	9.0	0.0123	8.74e-13	1.285e-09	-4.332	-2.166	18.8	18.8	13.3	1.0	1.0	1.0
J045	chr1	93584121	93588976	TRUE	OK	373.0	0.0119	0.09017	0.6208	-0.314	-0.157	416.2	352.4	369.1	405.2	278.6	416.6
J046	chr1	93589419	93590248	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.439	0.6077	NA	NA	NA	0.0	0.0	2.2	0.0	0.0	1.0
J047	chr1	93589419	93592264	TRUE	OK	263.1	0.00419	0.0007687	0.06601	-0.446	-0.223	319.0	250.4	268.3	257.9	220.0	263.3
J048	chr1	93592393	93613846	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.129	0.03731	NA	NA	NA	0.9	1.0	2.2	0.0	0.0	0.0
J049	chr1	93592393	93642303	TRUE	OK	308.0	0.00258	6.141e-06	0.001654	-0.495	-0.248	354.8	294.0	347.0	285.6	256.6	309.7
J050	chr1	93642343	93646476	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.14	0.4226	NA	NA	NA	0.0	0.0	1.1	0.0	1.0	2.0
J051	chr1	93642343	93674613	TRUE	OK	287.6	0.00386	0.0005061	0.05003	-0.437	-0.219	313.9	269.2	331.5	271.8	237.8	301.6
J052	chr1	93646574	93648727	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J053	chr1	93674941	93681106	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.0783	0.8449	NA	NA	NA	0.9	1.0	2.2	1.0	0.0	3.0
J054	chr1	93674941	93681597	TRUE	OK	232.1	0.0157	0.4014	0.8107	-0.165	-0.082	234.6	219.7	220.6	278.7	170.7	268.3
J055	chr1	93674941	93706091	TRUE	OK	11.4	0.0209	0.5183	0.8544	-0.281	-0.141	9.4	7.9	17.7	10.9	13.6	9.1
J056	chr1	93706142	93845566	TRUE	OK	3.5	0.151	0.9452	0.9875	-0.040	-0.020	2.6	5.9	1.1	3.0	7.3	1.0
J057	chr1	93720294	93723298	FALSE	LOW_COUNTS_INDEP_FILTER	2.7	0.0349	0.4817	NA	NA	NA	2.6	3.0	3.3	1.0	4.2	2.0
J058	chr1	93723536	93845566	FALSE	LOW_COUNTS_INDEP_FILTER	0.4	0.248	0.9183	NA	NA	NA	0.0	0.0	1.1	0.0	0.0	1.0
J059	chr1	93754346	93775196	TRUE	OK	246.7	0.00604	0.08221	0.6067	0.272	0.136	198.7	208.8	202.9	281.7	240.9	347.0
J060	chr1	93754346	93827614	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J061	chr1	93827687	93845566	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J062	chr1	93845712	93846964	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J063	chr1	93845712	93847069	TRUE	OK	5.3	0.0163	0.7531	0.9338	0.174	0.087	4.3	4.9	4.4	5.9	5.2	7.1
N064	chr1	93754346	93767235	TRUE	OK	28.6	0.00478	0.004879	0.2	0.714	0.357	21.3	14.8	22.2	40.5	33.5	39.3
N065	chr1	93767355	93775196	TRUE	OK	286.7	0.00145	0.09924	0.6341	0.153	0.077	268.7	219.7	252.7	305.4	342.5	330.9

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000137936.18
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE