Normalized Counts Table (ENSG00000285756.1)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chrX	3817527	3817534	TRUE	OK	24.2	0.0218	0.02652	0.4321	0.800	0.400	33.3	36.6	21.1	19.8	9.4	25.2
E002	chrX	3817534	3817778	TRUE	OK	128.1	0.00594	5.556e-06	0.001521	0.802	0.401	169.7	157.4	169.6	88.0	97.4	86.7
E003	chrX	3818441	3818500	TRUE	OK	97.5	0.00582	0.005104	0.2047	0.520	0.260	144.2	119.8	131.9	61.3	69.1	58.5
E004	chrX	3818656	3818703	TRUE	OK	24.3	0.0147	0.0357	0.4802	0.690	0.345	30.7	26.7	36.6	10.9	21.0	20.2
E005	chrX	3821680	3822072	TRUE	OK	24.3	0.0109	0.6695	0.9076	-0.136	-0.068	41.8	38.6	29.9	9.9	6.3	19.2
E006	chrX	3822072	3822285	TRUE	OK	24.7	0.0326	0.548	0.865	-0.221	-0.111	43.5	31.7	38.8	19.8	6.3	8.1
E007	chrX	3822373	3822571	TRUE	OK	88.9	0.00556	0.1688	0.7029	0.265	0.133	133.1	107.9	137.5	57.3	42.9	54.5
E008	chrX	3822571	3822580	TRUE	OK	30.5	0.00623	0.1606	0.6964	0.381	0.190	44.4	35.6	46.6	19.8	16.8	20.2
E009	chrX	3824233	3824598	TRUE	OK	11.0	0.0147	0.04049	0.5001	0.876	0.438	11.9	10.9	17.7	8.9	8.4	8.1
E010	chrX	3825087	3825203	TRUE	OK	40.7	0.00855	0.3005	0.7716	0.255	0.127	70.8	58.4	43.2	24.7	23.0	24.2
E011	chrX	3825203	3825231	TRUE	OK	41.7	0.00791	0.4036	0.8118	0.203	0.101	70.8	62.4	45.5	27.7	21.0	23.2
E012	chrX	3826600	3826729	TRUE	OK	67.0	0.00435	0.5123	0.8524	0.125	0.062	109.2	88.1	94.2	37.6	38.8	34.3
E013	chrX	3828505	3828597	TRUE	OK	96.5	0.0159	0.1251	0.6654	0.386	0.193	145.9	132.6	123.0	44.5	72.3	60.5
E014	chrX	3828597	3828859	TRUE	OK	136.3	0.00746	0.00673	0.2365	0.505	0.253	198.7	190.0	169.6	73.1	95.3	90.8
E015	chrX	3828859	3828892	TRUE	OK	76.7	0.0052	0.0395	0.4965	0.409	0.204	108.3	115.8	93.1	42.5	38.8	61.5
E016	chrX	3828892	3828950	TRUE	OK	90.2	0.00416	0.0141	0.3362	0.445	0.223	136.5	124.7	109.7	53.4	44.0	72.6
E017	chrX	3828950	3829363	TRUE	OK	201.1	0.00444	4.682e-06	0.001308	0.711	0.355	292.6	276.2	238.3	137.4	104.8	157.4
E018	chrX	3829363	3829392	TRUE	OK	48.6	0.00586	1.317e-05	0.003051	0.966	0.483	66.5	63.3	46.6	44.5	32.5	38.3
E019	chrX	3843340	3843566	TRUE	OK	46.4	0.00549	1.572e-13	2.71e-10	1.621	0.810	47.8	52.5	39.9	53.4	39.8	45.4
E020	chrX	3843566	3843857	TRUE	OK	10.0	0.0158	4.195e-10	3.787e-07	2.734	1.367	5.1	9.9	3.3	13.8	12.6	15.1
E021	chrX	3848205	3848490	TRUE	OK	8.4	0.0199	4.231e-07	0.0001737	-25.781	-12.891	20.5	17.8	12.2	0.0	0.0	0.0
E022	chrX	3850212	3850341	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E023	chrX	3853009	3854348	TRUE	OK	16.3	0.0117	6.474e-11	7.08e-08	-5.115	-2.557	39.2	27.7	29.9	0.0	0.0	1.0
E024	chrX	3854348	3854691	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E025	chrX	3854691	3854927	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.163	1	NA	NA	NA	0.9	1.0	1.1	0.0	0.0	1.0
E026	chrX	3860789	3860798	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.707	1	NA	NA	NA	0.0	2.0	0.0	0.0	0.0	0.0
E027	chrX	3860798	3860996	FALSE	LOW_COUNTS_INDEP_FILTER	2.5	0.141	0.5969	NA	NA	NA	4.3	5.9	0.0	3.0	1.0	1.0
E028	chrX	3862649	3862887	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E029	chrX	3863501	3863574	FALSE	LOW_COUNTS_INDEP_FILTER	2.5	0.126	0.5908	NA	NA	NA	5.1	4.9	0.0	3.0	1.0	1.0
E030	chrX	3863574	3863645	FALSE	LOW_COUNTS_INDEP_FILTER	0.9	0.151	0.6927	NA	NA	NA	2.6	2.0	0.0	0.0	1.0	0.0
E031	chrX	3864397	3865042	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.0732	0.1697	NA	NA	NA	3.4	2.0	5.5	0.0	1.0	0.0
E032	chrX	3865042	3865142	FALSE	LOW_COUNTS_INDEP_FILTER	2.6	0.0483	0.0071	NA	NA	NA	5.1	5.9	4.4	0.0	0.0	0.0
E033	chrX	3866921	3866949	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.71	1	NA	NA	NA	0.0	0.0	1.1	0.0	0.0	0.0
E034	chrX	3866949	3867135	TRUE	OK	3.5	0.141	0.7365	0.9286	-0.462	-0.231	2.6	3.0	11.1	1.0	2.1	1.0
E035	chrX	3867135	3867806	TRUE	OK	8.8	0.0443	0.5919	0.8806	-0.342	-0.171	9.4	10.9	21.1	3.0	4.2	4.0
E036	chrX	3881764	3882317	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.401	0.3944	NA	NA	NA	0.0	1.0	3.3	0.0	0.0	0.0
E037	chrX	3891437	3893115	TRUE	OK	26.0	0.0093	5.424e-17	1.5e-13	-5.809	-2.904	51.2	59.4	44.3	0.0	0.0	1.0
E038	chrX	3893115	3893291	TRUE	OK	7.2	0.0231	3.334e-06	0.0009879	-25.543	-12.772	16.2	16.8	10.0	0.0	0.0	0.0
E039	chrX	3893291	3893351	FALSE	LOW_COUNTS_INDEP_FILTER	2.3	0.109	0.01709	NA	NA	NA	6.8	5.9	1.1	0.0	0.0	0.0
E040	chrX	3899215	3899422	TRUE	OK	4.2	0.131	0.6472	0.9	-0.531	-0.265	9.4	9.9	1.1	3.0	1.0	1.0
E041	chrX	3901927	3902000	FALSE	LOW_COUNTS_INDEP_FILTER	2.2	0.096	0.4165	NA	NA	NA	4.3	4.0	0.0	3.0	1.0	1.0
E042	chrX	3902000	3902071	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.189	0.872	NA	NA	NA	2.6	1.0	0.0	0.0	1.0	0.0
E043	chrX	3903440	3903471	FALSE	LOW_COUNTS_INDEP_FILTER	0.4	0.283	0.5113	NA	NA	NA	1.7	1.0	0.0	0.0	0.0	0.0
E044	chrX	3905279	3905686	TRUE	OK	36.0	0.0055	1.868e-24	1.039e-20	-6.309	-3.155	73.4	74.2	67.6	0.0	0.0	1.0
E045	chrX	3905686	3905709	TRUE	OK	21.8	0.00848	1.076e-14	2.2e-11	-5.542	-2.771	43.5	47.5	38.8	0.0	0.0	1.0
E046	chrX	3905709	3906232	TRUE	OK	68.4	0.00383	4.09e-36	4.282e-32	-4.291	-2.145	135.6	132.6	134.1	3.0	1.0	4.0
E047	chrX	3920193	3920746	TRUE	OK	11.5	0.0155	3.886e-09	2.742e-06	-26.203	-13.101	20.5	21.8	26.6	0.0	0.0	0.0
E048	chrX	3929868	3931546	TRUE	OK	25.9	0.0214	4.442e-16	1.103e-12	-27.417	-13.708	41.8	50.5	63.2	0.0	0.0	0.0
E049	chrX	3931546	3931573	FALSE	LOW_COUNTS_INDEP_FILTER	1.6	0.081	0.04306	NA	NA	NA	3.4	2.0	4.4	0.0	0.0	0.0
E050	chrX	3931573	3931782	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.0907	0.05812	NA	NA	NA	2.6	2.0	4.4	0.0	0.0	0.0
E051	chrX	3937651	3937855	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J052	chrX	3817778	3818441	TRUE	OK	76.9	0.00651	0.0002585	0.0314	0.734	0.367	104.1	92.1	102.0	55.3	60.8	47.4
J053	chrX	3817778	3828505	TRUE	OK	3.9	0.0261	0.6453	0.8994	-0.348	-0.174	6.0	7.9	4.4	2.0	0.0	3.0
J054	chrX	3818500	3818656	TRUE	OK	17.8	0.0168	0.06779	0.5782	0.675	0.338	21.3	20.8	26.6	8.9	17.8	11.1
J055	chrX	3818500	3822072	FALSE	LOW_COUNTS_INDEP_FILTER	1.4	0.0739	0.5872	NA	NA	NA	3.4	1.0	1.1	2.0	1.0	0.0
J056	chrX	3818500	3822373	TRUE	OK	33.8	0.0196	0.4888	0.8434	0.225	0.112	58.9	36.6	48.8	27.7	13.6	17.1
J057	chrX	3818500	3825087	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.095	0.04514	NA	NA	NA	1.7	0.0	0.0	2.0	1.0	1.0
J058	chrX	3818500	3829363	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.255	0.05154	NA	NA	NA	0.0	0.0	0.0	1.0	1.0	0.0
J059	chrX	3818703	3822373	TRUE	OK	8.1	0.105	0.4947	0.8457	0.563	0.282	6.0	12.9	13.3	1.0	5.2	10.1
J060	chrX	3818703	3828505	TRUE	OK	3.3	0.132	0.08844	0.6182	1.604	0.802	4.3	2.0	3.3	1.0	7.3	2.0
J061	chrX	3822285	3822373	TRUE	OK	5.5	0.0586	0.5705	0.8735	-0.371	-0.185	9.4	8.9	7.8	5.9	0.0	1.0
J062	chrX	3822580	3824233	TRUE	OK	8.1	0.0129	0.04875	0.5289	0.932	0.466	10.2	7.9	11.1	4.9	8.4	6.1
J063	chrX	3822580	3825087	TRUE	OK	4.6	0.0296	0.05904	0.5574	1.179	0.590	7.7	2.0	5.5	3.0	5.2	4.0
J064	chrX	3822580	3828505	TRUE	OK	5.1	0.0204	0.09918	0.634	-1.232	-0.616	11.1	6.9	8.9	3.0	0.0	1.0
J065	chrX	3825231	3826600	TRUE	OK	8.3	0.0301	0.7028	0.918	0.185	0.092	11.9	16.8	6.7	5.9	5.2	3.0
J066	chrX	3826729	3828505	TRUE	OK	30.8	0.00552	0.4438	0.8273	0.203	0.101	46.1	41.6	44.3	12.8	23.0	17.1
J067	chrX	3829392	3843340	TRUE	OK	31.2	0.00463	1.918e-05	0.00414	1.068	0.534	40.1	40.6	28.8	28.7	23.0	26.2
J068	chrX	3829392	3854691	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J069	chrX	3848490	3850212	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J070	chrX	3850341	3854691	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J071	chrX	3854927	3860789	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.538	1	NA	NA	NA	0.0	1.0	0.0	0.0	0.0	0.0
J072	chrX	3854927	3866921	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.501	1	NA	NA	NA	0.0	0.0	1.1	0.0	0.0	0.0
J073	chrX	3860996	3862649	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J074	chrX	3860996	3863501	FALSE	LOW_COUNTS_INDEP_FILTER	2.2	0.0834	0.4114	NA	NA	NA	4.3	4.0	0.0	3.0	1.0	1.0
J075	chrX	3862887	3865042	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J076	chrX	3863645	3893115	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J077	chrX	3865142	3866949	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.117	0.1122	NA	NA	NA	1.7	1.0	4.4	0.0	0.0	0.0
J078	chrX	3867806	3881764	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.258	0.7322	NA	NA	NA	0.0	1.0	1.1	0.0	0.0	0.0
J079	chrX	3867806	3893115	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J080	chrX	3893351	3899215	FALSE	LOW_COUNTS_INDEP_FILTER	1.4	0.0866	0.06083	NA	NA	NA	2.6	4.9	1.1	0.0	0.0	0.0
J081	chrX	3893351	3905279	FALSE	LOW_COUNTS_INDEP_FILTER	0.6	0.195	0.3513	NA	NA	NA	2.6	1.0	0.0	0.0	0.0	0.0
J082	chrX	3899422	3901927	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.0806	0.3236	NA	NA	NA	4.3	3.0	0.0	3.0	1.0	1.0
J083	chrX	3902071	3903440	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J084	chrX	3902071	3931546	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J085	chrX	3906232	3920193	TRUE	OK	11.1	0.0104	3.178e-09	2.298e-06	-26.157	-13.079	20.5	21.8	24.4	0.0	0.0	0.0
J086	chrX	3931782	3937651	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
N087	chrX	3818500	3828505	TRUE	OK	11.9	0.0707	0.5448	0.8638	0.388	0.194	17.1	19.8	12.2	2.0	12.6	8.1

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000285756.1
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE