| << | < Prev Gene | TOP | Next Gene > | >> | |
| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chrX | 3817527 | 3817534 | TRUE | OK | 24.2 | 0.0218 | 0.02652 | 0.4321 | 0.800 | 0.400 | 39.0 | 37.0 | 19.0 | 20.0 | 9.0 | 25.0 |
| E002 | chrX | 3817534 | 3817778 | TRUE | OK | 128.1 | 0.00594 | 5.556e-06 | 0.001521 | 0.802 | 0.401 | 199.0 | 159.0 | 153.0 | 89.0 | 93.0 | 86.0 |
| E003 | chrX | 3818441 | 3818500 | TRUE | OK | 97.5 | 0.00582 | 0.005104 | 0.2047 | 0.520 | 0.260 | 169.0 | 121.0 | 119.0 | 62.0 | 66.0 | 58.0 |
| E004 | chrX | 3818656 | 3818703 | TRUE | OK | 24.3 | 0.0147 | 0.0357 | 0.4802 | 0.690 | 0.345 | 36.0 | 27.0 | 33.0 | 11.0 | 20.0 | 20.0 |
| E005 | chrX | 3821680 | 3822072 | TRUE | OK | 24.3 | 0.0109 | 0.6695 | 0.9076 | -0.136 | -0.068 | 49.0 | 39.0 | 27.0 | 10.0 | 6.0 | 19.0 |
| E006 | chrX | 3822072 | 3822285 | TRUE | OK | 24.7 | 0.0326 | 0.548 | 0.865 | -0.221 | -0.111 | 51.0 | 32.0 | 35.0 | 20.0 | 6.0 | 8.0 |
| E007 | chrX | 3822373 | 3822571 | TRUE | OK | 88.9 | 0.00556 | 0.1688 | 0.7029 | 0.265 | 0.133 | 156.0 | 109.0 | 124.0 | 58.0 | 41.0 | 54.0 |
| E008 | chrX | 3822571 | 3822580 | TRUE | OK | 30.5 | 0.00623 | 0.1606 | 0.6964 | 0.381 | 0.190 | 52.0 | 36.0 | 42.0 | 20.0 | 16.0 | 20.0 |
| E009 | chrX | 3824233 | 3824598 | TRUE | OK | 11.0 | 0.0147 | 0.04049 | 0.5001 | 0.876 | 0.438 | 14.0 | 11.0 | 16.0 | 9.0 | 8.0 | 8.0 |
| E010 | chrX | 3825087 | 3825203 | TRUE | OK | 40.7 | 0.00855 | 0.3005 | 0.7716 | 0.255 | 0.127 | 83.0 | 59.0 | 39.0 | 25.0 | 22.0 | 24.0 |
| E011 | chrX | 3825203 | 3825231 | TRUE | OK | 41.7 | 0.00791 | 0.4036 | 0.8118 | 0.203 | 0.101 | 83.0 | 63.0 | 41.0 | 28.0 | 20.0 | 23.0 |
| E012 | chrX | 3826600 | 3826729 | TRUE | OK | 67.0 | 0.00435 | 0.5123 | 0.8524 | 0.125 | 0.062 | 128.0 | 89.0 | 85.0 | 38.0 | 37.0 | 34.0 |
| E013 | chrX | 3828505 | 3828597 | TRUE | OK | 96.5 | 0.0159 | 0.1251 | 0.6654 | 0.386 | 0.193 | 171.0 | 134.0 | 111.0 | 45.0 | 69.0 | 60.0 |
| E014 | chrX | 3828597 | 3828859 | TRUE | OK | 136.3 | 0.00746 | 0.00673 | 0.2365 | 0.505 | 0.253 | 233.0 | 192.0 | 153.0 | 74.0 | 91.0 | 90.0 |
| E015 | chrX | 3828859 | 3828892 | TRUE | OK | 76.7 | 0.0052 | 0.0395 | 0.4965 | 0.409 | 0.204 | 127.0 | 117.0 | 84.0 | 43.0 | 37.0 | 61.0 |
| E016 | chrX | 3828892 | 3828950 | TRUE | OK | 90.2 | 0.00416 | 0.0141 | 0.3362 | 0.445 | 0.223 | 160.0 | 126.0 | 99.0 | 54.0 | 42.0 | 72.0 |
| E017 | chrX | 3828950 | 3829363 | TRUE | OK | 201.1 | 0.00444 | 4.682e-06 | 0.001308 | 0.711 | 0.355 | 343.0 | 279.0 | 215.0 | 139.0 | 100.0 | 156.0 |
| E018 | chrX | 3829363 | 3829392 | TRUE | OK | 48.6 | 0.00586 | 1.317e-05 | 0.003051 | 0.966 | 0.483 | 78.0 | 64.0 | 42.0 | 45.0 | 31.0 | 38.0 |
| E019 | chrX | 3843340 | 3843566 | TRUE | OK | 46.4 | 0.00549 | 1.572e-13 | 2.71e-10 | 1.621 | 0.810 | 56.0 | 53.0 | 36.0 | 54.0 | 38.0 | 45.0 |
| E020 | chrX | 3843566 | 3843857 | TRUE | OK | 10.0 | 0.0158 | 4.195e-10 | 3.787e-07 | 2.734 | 1.367 | 6.0 | 10.0 | 3.0 | 14.0 | 12.0 | 15.0 |
| E021 | chrX | 3848205 | 3848490 | TRUE | OK | 8.4 | 0.0199 | 4.231e-07 | 0.0001737 | -25.781 | -12.891 | 24.0 | 18.0 | 11.0 | 0.0 | 0.0 | 0.0 |
| E022 | chrX | 3850212 | 3850341 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E023 | chrX | 3853009 | 3854348 | TRUE | OK | 16.3 | 0.0117 | 6.474e-11 | 7.08e-08 | -5.115 | -2.557 | 46.0 | 28.0 | 27.0 | 0.0 | 0.0 | 1.0 |
| E024 | chrX | 3854348 | 3854691 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E025 | chrX | 3854691 | 3854927 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.163 | 1 | NA | NA | NA | 1.0 | 1.0 | 1.0 | 0.0 | 0.0 | 1.0 |
| E026 | chrX | 3860789 | 3860798 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.707 | 1 | NA | NA | NA | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E027 | chrX | 3860798 | 3860996 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.141 | 0.5969 | NA | NA | NA | 5.0 | 6.0 | 0.0 | 3.0 | 1.0 | 1.0 |
| E028 | chrX | 3862649 | 3862887 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E029 | chrX | 3863501 | 3863574 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.126 | 0.5908 | NA | NA | NA | 6.0 | 5.0 | 0.0 | 3.0 | 1.0 | 1.0 |
| E030 | chrX | 3863574 | 3863645 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.9 | 0.151 | 0.6927 | NA | NA | NA | 3.0 | 2.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| E031 | chrX | 3864397 | 3865042 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.0732 | 0.1697 | NA | NA | NA | 4.0 | 2.0 | 5.0 | 0.0 | 1.0 | 0.0 |
| E032 | chrX | 3865042 | 3865142 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.0483 | 0.0071 | NA | NA | NA | 6.0 | 6.0 | 4.0 | 0.0 | 0.0 | 0.0 |
| E033 | chrX | 3866921 | 3866949 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.71 | 1 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| E034 | chrX | 3866949 | 3867135 | TRUE | OK | 3.5 | 0.141 | 0.7365 | 0.9286 | -0.462 | -0.231 | 3.0 | 3.0 | 10.0 | 1.0 | 2.0 | 1.0 |
| E035 | chrX | 3867135 | 3867806 | TRUE | OK | 8.8 | 0.0443 | 0.5919 | 0.8806 | -0.342 | -0.171 | 11.0 | 11.0 | 19.0 | 3.0 | 4.0 | 4.0 |
| E036 | chrX | 3881764 | 3882317 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.401 | 0.3944 | NA | NA | NA | 0.0 | 1.0 | 3.0 | 0.0 | 0.0 | 0.0 |
| E037 | chrX | 3891437 | 3893115 | TRUE | OK | 26.0 | 0.0093 | 5.424e-17 | 1.5e-13 | -5.809 | -2.904 | 60.0 | 60.0 | 40.0 | 0.0 | 0.0 | 1.0 |
| E038 | chrX | 3893115 | 3893291 | TRUE | OK | 7.2 | 0.0231 | 3.334e-06 | 0.0009879 | -25.543 | -12.772 | 19.0 | 17.0 | 9.0 | 0.0 | 0.0 | 0.0 |
| E039 | chrX | 3893291 | 3893351 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.109 | 0.01709 | NA | NA | NA | 8.0 | 6.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| E040 | chrX | 3899215 | 3899422 | TRUE | OK | 4.2 | 0.131 | 0.6472 | 0.9 | -0.531 | -0.265 | 11.0 | 10.0 | 1.0 | 3.0 | 1.0 | 1.0 |
| E041 | chrX | 3901927 | 3902000 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.2 | 0.096 | 0.4165 | NA | NA | NA | 5.0 | 4.0 | 0.0 | 3.0 | 1.0 | 1.0 |
| E042 | chrX | 3902000 | 3902071 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.189 | 0.872 | NA | NA | NA | 3.0 | 1.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| E043 | chrX | 3903440 | 3903471 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.4 | 0.283 | 0.5113 | NA | NA | NA | 2.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E044 | chrX | 3905279 | 3905686 | TRUE | OK | 36.0 | 0.0055 | 1.868e-24 | 1.039e-20 | -6.309 | -3.155 | 86.0 | 75.0 | 61.0 | 0.0 | 0.0 | 1.0 |
| E045 | chrX | 3905686 | 3905709 | TRUE | OK | 21.8 | 0.00848 | 1.076e-14 | 2.2e-11 | -5.542 | -2.771 | 51.0 | 48.0 | 35.0 | 0.0 | 0.0 | 1.0 |
| E046 | chrX | 3905709 | 3906232 | TRUE | OK | 68.4 | 0.00383 | 4.09e-36 | 4.282e-32 | -4.291 | -2.145 | 159.0 | 134.0 | 121.0 | 3.0 | 1.0 | 4.0 |
| E047 | chrX | 3920193 | 3920746 | TRUE | OK | 11.5 | 0.0155 | 3.886e-09 | 2.742e-06 | -26.203 | -13.101 | 24.0 | 22.0 | 24.0 | 0.0 | 0.0 | 0.0 |
| E048 | chrX | 3929868 | 3931546 | TRUE | OK | 25.9 | 0.0214 | 4.442e-16 | 1.103e-12 | -27.417 | -13.708 | 49.0 | 51.0 | 57.0 | 0.0 | 0.0 | 0.0 |
| E049 | chrX | 3931546 | 3931573 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.081 | 0.04306 | NA | NA | NA | 4.0 | 2.0 | 4.0 | 0.0 | 0.0 | 0.0 |
| E050 | chrX | 3931573 | 3931782 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.0907 | 0.05812 | NA | NA | NA | 3.0 | 2.0 | 4.0 | 0.0 | 0.0 | 0.0 |
| E051 | chrX | 3937651 | 3937855 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J052 | chrX | 3817778 | 3818441 | TRUE | OK | 76.9 | 0.00651 | 0.0002585 | 0.0314 | 0.734 | 0.367 | 122.0 | 93.0 | 92.0 | 56.0 | 58.0 | 47.0 |
| J053 | chrX | 3817778 | 3828505 | TRUE | OK | 3.9 | 0.0261 | 0.6453 | 0.8994 | -0.348 | -0.174 | 7.0 | 8.0 | 4.0 | 2.0 | 0.0 | 3.0 |
| J054 | chrX | 3818500 | 3818656 | TRUE | OK | 17.8 | 0.0168 | 0.06779 | 0.5782 | 0.675 | 0.338 | 25.0 | 21.0 | 24.0 | 9.0 | 17.0 | 11.0 |
| J055 | chrX | 3818500 | 3822072 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.4 | 0.0739 | 0.5872 | NA | NA | NA | 4.0 | 1.0 | 1.0 | 2.0 | 1.0 | 0.0 |
| J056 | chrX | 3818500 | 3822373 | TRUE | OK | 33.8 | 0.0196 | 0.4888 | 0.8434 | 0.225 | 0.112 | 69.0 | 37.0 | 44.0 | 28.0 | 13.0 | 17.0 |
| J057 | chrX | 3818500 | 3825087 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.095 | 0.04514 | NA | NA | NA | 2.0 | 0.0 | 0.0 | 2.0 | 1.0 | 1.0 |
| J058 | chrX | 3818500 | 3829363 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.255 | 0.05154 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 0.0 |
| J059 | chrX | 3818703 | 3822373 | TRUE | OK | 8.1 | 0.105 | 0.4947 | 0.8457 | 0.563 | 0.282 | 7.0 | 13.0 | 12.0 | 1.0 | 5.0 | 10.0 |
| J060 | chrX | 3818703 | 3828505 | TRUE | OK | 3.3 | 0.132 | 0.08844 | 0.6182 | 1.604 | 0.802 | 5.0 | 2.0 | 3.0 | 1.0 | 7.0 | 2.0 |
| J061 | chrX | 3822285 | 3822373 | TRUE | OK | 5.5 | 0.0586 | 0.5705 | 0.8735 | -0.371 | -0.185 | 11.0 | 9.0 | 7.0 | 6.0 | 0.0 | 1.0 |
| J062 | chrX | 3822580 | 3824233 | TRUE | OK | 8.1 | 0.0129 | 0.04875 | 0.5289 | 0.932 | 0.466 | 12.0 | 8.0 | 10.0 | 5.0 | 8.0 | 6.0 |
| J063 | chrX | 3822580 | 3825087 | TRUE | OK | 4.6 | 0.0296 | 0.05904 | 0.5574 | 1.179 | 0.590 | 9.0 | 2.0 | 5.0 | 3.0 | 5.0 | 4.0 |
| J064 | chrX | 3822580 | 3828505 | TRUE | OK | 5.1 | 0.0204 | 0.09918 | 0.634 | -1.232 | -0.616 | 13.0 | 7.0 | 8.0 | 3.0 | 0.0 | 1.0 |
| J065 | chrX | 3825231 | 3826600 | TRUE | OK | 8.3 | 0.0301 | 0.7028 | 0.918 | 0.185 | 0.092 | 14.0 | 17.0 | 6.0 | 6.0 | 5.0 | 3.0 |
| J066 | chrX | 3826729 | 3828505 | TRUE | OK | 30.8 | 0.00552 | 0.4438 | 0.8273 | 0.203 | 0.101 | 54.0 | 42.0 | 40.0 | 13.0 | 22.0 | 17.0 |
| J067 | chrX | 3829392 | 3843340 | TRUE | OK | 31.2 | 0.00463 | 1.918e-05 | 0.00414 | 1.068 | 0.534 | 47.0 | 41.0 | 26.0 | 29.0 | 22.0 | 26.0 |
| J068 | chrX | 3829392 | 3854691 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J069 | chrX | 3848490 | 3850212 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J070 | chrX | 3850341 | 3854691 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J071 | chrX | 3854927 | 3860789 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.538 | 1 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J072 | chrX | 3854927 | 3866921 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.501 | 1 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J073 | chrX | 3860996 | 3862649 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J074 | chrX | 3860996 | 3863501 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.2 | 0.0834 | 0.4114 | NA | NA | NA | 5.0 | 4.0 | 0.0 | 3.0 | 1.0 | 1.0 |
| J075 | chrX | 3862887 | 3865042 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J076 | chrX | 3863645 | 3893115 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J077 | chrX | 3865142 | 3866949 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.117 | 0.1122 | NA | NA | NA | 2.0 | 1.0 | 4.0 | 0.0 | 0.0 | 0.0 |
| J078 | chrX | 3867806 | 3881764 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.258 | 0.7322 | NA | NA | NA | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J079 | chrX | 3867806 | 3893115 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J080 | chrX | 3893351 | 3899215 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.4 | 0.0866 | 0.06083 | NA | NA | NA | 3.0 | 5.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J081 | chrX | 3893351 | 3905279 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.6 | 0.195 | 0.3513 | NA | NA | NA | 3.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J082 | chrX | 3899422 | 3901927 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.0806 | 0.3236 | NA | NA | NA | 5.0 | 3.0 | 0.0 | 3.0 | 1.0 | 1.0 |
| J083 | chrX | 3902071 | 3903440 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J084 | chrX | 3902071 | 3931546 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J085 | chrX | 3906232 | 3920193 | TRUE | OK | 11.1 | 0.0104 | 3.178e-09 | 2.298e-06 | -26.157 | -13.079 | 24.0 | 22.0 | 22.0 | 0.0 | 0.0 | 0.0 |
| J086 | chrX | 3931782 | 3937651 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| N087 | chrX | 3818500 | 3828505 | TRUE | OK | 11.9 | 0.0707 | 0.5448 | 0.8638 | 0.388 | 0.194 | 20.0 | 20.0 | 11.0 | 2.0 | 12.0 | 8.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000285756.1 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |