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Normalized Counts Table (ENSG00000182718.16)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr15	60347133	60347326	TRUE	OK	410.8	0.0158	0.1223	0.6625	0.385	0.193	390.7	324.7	368.0	370.6	657.8	353.0
E002	chr15	60347326	60347331	TRUE	OK	589.0	0.0125	0.5281	0.858	0.158	0.079	616.7	515.7	558.7	504.0	846.4	492.2
E003	chr15	60347331	60347336	TRUE	OK	1118.4	0.0085	0.6246	0.8922	-0.047	-0.024	1197.6	1112.5	1139.6	924.0	1448.7	887.7
E004	chr15	60347336	60347341	TRUE	OK	1257.5	0.00847	0.7273	0.9259	-0.026	-0.013	1354.5	1239.2	1258.2	1050.5	1632.0	1010.7
E005	chr15	60347341	60347689	TRUE	OK	67714.7	0.00519	0.1429	0.6822	0.193	0.096	66048.1	64355.0	65418.5	62146.3	85827.9	62492.1
E006	chr15	60349074	60349197	TRUE	OK	62532.7	0.00276	0.8591	0.9647	0.021	0.010	64661.2	61015.4	63212.4	58361.1	71583.7	56362.3
E007	chr15	60351191	60351192	TRUE	OK	305.0	0.0148	0.005771	0.2184	0.571	0.285	170.6	288.0	290.4	313.3	428.4	338.9
E008	chr15	60351192	60351251	TRUE	OK	47566.4	0.00156	0.8269	0.9554	0.016	0.008	48529.8	46410.9	48877.9	44961.0	52998.5	43620.3
E009	chr15	60351251	60351553	TRUE	OK	414.4	0.00275	1.935e-19	7.209e-16	0.954	0.477	278.1	305.8	277.1	554.4	557.3	513.4
E010	chr15	60351723	60351732	TRUE	OK	39612.1	0.00131	0.7926	0.9456	0.017	0.009	40306.3	38792.4	40593.7	37340.3	44197.2	36442.4
E011	chr15	60351732	60351781	TRUE	OK	52841.2	0.00107	0.7954	0.9465	0.015	0.008	53221.1	52919.8	53663.5	50042.7	58606.9	48593.2
E012	chr15	60351781	60351786	TRUE	OK	41913.3	0.00132	0.9255	0.9825	0.005	0.003	42356.0	42294.3	42440.6	40368.4	45572.6	38447.7
E013	chr15	60351786	60351819	TRUE	OK	51945.5	0.000751	0.8137	0.9515	-0.010	-0.005	51864.9	52659.5	53672.3	49092.0	56877.5	47506.9
E014	chr15	60352378	60352382	TRUE	OK	23.4	0.0069	0.0004173	0.04381	1.007	0.503	17.9	14.8	14.4	31.6	31.4	30.3
E015	chr15	60352382	60352476	TRUE	OK	67400.8	0.000871	0.8471	0.9612	-0.010	-0.005	67488.8	68292.5	69411.4	63839.2	73262.8	62109.8
E016	chr15	60354152	60354153	TRUE	OK	702.3	0.0125	0.3254	0.7817	0.162	0.081	488.8	765.1	762.7	661.2	763.6	772.7
E017	chr15	60354153	60354213	TRUE	OK	58874.4	0.000755	0.3153	0.7775	-0.046	-0.023	59697.8	60522.5	60716.0	54756.9	63694.7	53858.7
E018	chr15	60355427	60355918	TRUE	OK	281.3	0.00739	0.6265	0.8928	0.067	0.034	244.8	326.6	263.8	283.6	273.4	295.5
E019	chr15	60355918	60355960	TRUE	OK	49047.0	0.00168	0.5612	0.87	-0.040	-0.020	51181.7	49929.6	49462.1	45806.0	52906.3	44996.2
E020	chr15	60355960	60355998	TRUE	OK	59558.4	0.00071	0.04293	0.5103	-0.092	-0.046	60797.2	61393.6	63011.8	54843.8	62514.2	54789.7
E021	chr15	60357145	60357190	TRUE	OK	57676.7	0.000987	0.1089	0.6471	-0.086	-0.043	59377.0	59352.6	60383.4	53287.3	60404.5	53255.5
E022	chr15	60357190	60357193	TRUE	OK	47704.0	0.00102	0.1022	0.6378	-0.090	-0.045	49162.7	49195.2	50092.8	44154.5	49585.6	44032.9
E023	chr15	60357193	60357236	TRUE	OK	57507.9	0.000971	0.1191	0.6596	-0.084	-0.042	58987.2	59025.9	60461.0	53075.8	60039.9	53457.2
E024	chr15	60360930	60360940	TRUE	OK	596.3	0.0135	0.2663	0.7565	0.215	0.107	412.0	632.5	635.2	500.1	763.6	634.5
E025	chr15	60360940	60360941	TRUE	OK	44804.4	0.000633	0.006262	0.2277	-0.117	-0.059	45954.7	46125.8	48456.6	40224.1	46635.8	41429.4
E026	chr15	60360941	60360966	TRUE	OK	46904.4	0.000712	0.01207	0.3131	-0.114	-0.057	48229.6	48172.7	50552.9	42322.3	48798.9	43350.0
E027	chr15	60360966	60361054	TRUE	OK	62138.2	0.00237	0.1127	0.6513	-0.134	-0.067	64586.1	64665.8	65921.7	58251.4	61855.3	57548.5
E028	chr15	60361447	60361486	TRUE	OK	17.6	0.0183	0.7804	0.9421	-0.108	-0.054	13.6	16.8	25.5	18.8	12.6	18.2
E029	chr15	60362626	60363022	TRUE	OK	61.5	0.0204	0.9353	0.9851	-0.007	-0.003	75.9	70.3	39.9	57.3	62.9	62.5
E030	chr15	60364428	60364475	TRUE	OK	51966.8	0.00501	0.1854	0.7143	-0.162	-0.081	55610.3	54476.8	54642.3	50087.2	49091.2	47893.2
E031	chr15	60364475	60364523	TRUE	OK	48619.8	0.00871	0.263	0.7548	-0.180	-0.090	52798.9	52009.2	50156.0	48167.0	43374.9	45213.1
E032	chr15	60374451	60374505	FALSE	LOW_COUNTS_INDEP_FILTER	2.6	0.201	0.9322	NA	NA	NA	6.0	0.0	2.2	1.0	4.2	2.0
E033	chr15	60374618	60374682	TRUE	OK	37.6	0.00463	0.3525	0.7922	-0.208	-0.104	42.6	39.6	39.9	34.6	35.6	33.3
E034	chr15	60382341	60382347	TRUE	OK	38316.7	0.0111	0.2104	0.7296	-0.224	-0.112	42367.9	42015.2	39506.3	38295.0	32410.4	35305.6
E035	chr15	60382347	60382441	TRUE	OK	51714.7	0.00998	0.1265	0.6667	-0.261	-0.131	54735.2	56512.8	56873.8	50376.8	43696.5	48092.9
E036	chr15	60382441	60384827	TRUE	OK	151.2	0.00591	0.003965	0.1784	0.459	0.229	117.7	137.6	133.0	172.9	159.2	186.6
E037	chr15	60385556	60386027	TRUE	OK	21.3	0.0237	0.2367	0.7437	-0.448	-0.224	32.4	23.8	17.7	16.8	14.7	22.2
E038	chr15	60386027	60386086	TRUE	OK	39412.3	0.00946	0.208	0.7279	-0.209	-0.105	41567.0	43090.1	42224.4	38639.9	33557.5	37394.6
E039	chr15	60386086	60387097	TRUE	OK	1071.9	0.0135	0.9256	0.9825	-0.008	-0.004	818.0	1144.2	1303.6	1019.9	1006.7	1138.8
E040	chr15	60390212	60390317	TRUE	OK	420.2	0.0102	0.2427	0.7463	-0.207	-0.104	445.3	451.4	470.0	433.9	334.2	386.3
E041	chr15	60391022	60391107	TRUE	OK	30.0	0.00612	0.5345	0.8603	-0.157	-0.078	34.1	31.7	29.9	23.7	28.3	32.3
E042	chr15	60391107	60391127	TRUE	OK	23.4	0.0067	0.9338	0.9847	-0.024	-0.012	26.4	22.8	22.2	22.7	24.1	22.2
E043	chr15	60391127	60391151	TRUE	OK	17.9	0.00911	0.7622	0.9366	0.097	0.049	19.6	12.9	20.0	15.8	21.0	18.2
E044	chr15	60391242	60391297	TRUE	OK	14.0	0.0115	0.9554	0.9902	0.029	0.014	14.5	11.9	15.5	9.9	19.9	12.1
E045	chr15	60393037	60393096	TRUE	OK	595.4	0.00923	0.4033	0.8117	-0.141	-0.071	640.6	596.9	658.5	583.1	494.4	599.2
E046	chr15	60393096	60393440	TRUE	OK	1039.4	0.00848	0.4658	0.8354	-0.116	-0.058	1114.8	1081.9	1085.3	1044.6	885.2	1024.8
E047	chr15	60394573	60394695	TRUE	OK	46.6	0.00625	0.1559	0.6932	-0.311	-0.156	46.9	50.5	59.9	42.5	34.6	45.4
E048	chr15	60395644	60395906	TRUE	OK	36.5	0.00727	0.3367	0.7861	-0.231	-0.115	42.6	33.7	43.2	24.7	35.6	39.3
E049	chr15	60395906	60396150	TRUE	OK	63.4	0.00354	0.01902	0.3805	-0.421	-0.210	75.1	67.3	77.6	54.4	54.5	51.4
E050	chr15	60396150	60396279	TRUE	OK	364.4	0.0022	0.02293	0.4092	-0.229	-0.115	393.2	399.9	400.2	334.0	331.0	327.8
E051	chr15	60396279	60396372	TRUE	OK	552.3	0.00761	0.07466	0.593	-0.277	-0.138	612.4	626.5	596.4	516.9	445.2	516.5
E052	chr15	60396372	60396427	TRUE	OK	488.1	0.00895	0.168	0.7025	-0.232	-0.116	529.7	563.2	506.6	485.2	397.0	446.9
E053	chr15	60397254	60397257	TRUE	OK	13.2	0.0145	0.3757	0.8008	-0.342	-0.171	12.8	18.8	13.3	14.8	8.4	11.1
E054	chr15	60397257	60397338	TRUE	OK	5423.4	0.00894	0.411	0.8146	-0.132	-0.066	5936.7	5676.5	5584.8	5467.2	4645.8	5229.1
E055	chr15	60397870	60397942	TRUE	OK	183.4	0.00559	0.3232	0.7809	-0.155	-0.077	202.2	177.2	207.3	178.9	161.3	173.5
E056	chr15	60397942	60397964	TRUE	OK	22864.9	0.00912	0.1593	0.6959	-0.228	-0.114	23982.1	25088.5	25262.6	22282.8	18996.9	21576.1
E057	chr15	60397964	60397968	TRUE	OK	16448.7	0.00954	0.1813	0.7116	-0.220	-0.110	17109.8	18260.9	18089.2	16201.9	13533.0	15497.7
E058	chr15	60397968	60397973	TRUE	OK	8054.6	0.00983	0.1096	0.648	-0.266	-0.133	8951.9	8581.6	9075.6	7828.2	6456.9	7433.1
E059	chr15	60397973	60397974	TRUE	OK	2310.7	0.0113	0.1479	0.6866	-0.258	-0.129	2624.6	2429.0	2576.3	2223.6	1803.8	2207.0
E060	chr15	60397974	60397978	TRUE	OK	1855.0	0.0114	0.1488	0.6874	-0.259	-0.129	2111.1	1969.7	2046.4	1777.9	1442.4	1782.4
E061	chr15	60397978	60397984	TRUE	OK	323.7	0.00593	0.8434	0.9601	0.026	0.013	320.7	324.7	329.2	316.3	298.5	353.0
E062	chr15	60397984	60397985	TRUE	OK	111.6	0.00457	0.9377	0.9858	-0.014	-0.007	105.8	116.8	118.6	102.8	102.7	123.1
E063	chr15	60397985	60397986	TRUE	OK	96.1	0.00386	0.935	0.985	-0.015	-0.007	93.8	100.0	99.8	90.9	88.0	103.9
E064	chr15	60397986	60397988	TRUE	OK	82.5	0.0037	0.1605	0.6964	-0.231	-0.116	86.2	87.1	97.6	65.2	74.4	84.7
E065	chr15	60397988	60398001	TRUE	OK	73.2	0.00378	0.2733	0.7597	-0.188	-0.094	74.2	74.2	88.7	59.3	68.1	74.6
E066	chr15	60398001	60398033	TRUE	OK	15.8	0.0226	0.7465	0.9317	-0.125	-0.062	14.5	14.8	21.1	14.8	9.4	20.2
E067	chr15	60398033	60398043	FALSE	LOW_COUNTS_INDEP_FILTER	3.1	0.273	0.7515	NA	NA	NA	0.0	3.0	5.5	2.0	1.0	7.1
E068	chr15	60398644	60398742	TRUE	OK	35.1	0.0213	0.2573	0.7522	0.358	0.179	25.6	28.7	39.9	49.4	30.4	36.3
E069	chr15	60402768	60402883	TRUE	OK	3.7	0.0727	0.1605	0.6964	-1.091	-0.545	6.8	3.0	5.5	1.0	1.0	5.0
J070	chr15	60347689	60349074	TRUE	OK	40286.4	0.00274	0.8995	0.9758	-0.007	-0.003	42438.7	39179.4	40957.3	37634.8	45748.6	35759.5
J071	chr15	60347689	60351192	TRUE	OK	15.1	0.0292	0.3888	0.8056	0.379	0.190	9.4	10.9	20.0	10.9	25.1	14.1
J072	chr15	60349197	60351192	TRUE	OK	34569.8	0.00154	0.9868	0.9975	0.004	0.002	35764.2	33888.9	35209.5	32164.7	38890.4	31500.8
J073	chr15	60351251	60351723	TRUE	OK	38627.2	0.00107	0.8997	0.9758	0.008	0.004	39316.0	37885.7	39820.0	36272.0	42996.7	35473.0
J074	chr15	60351819	60352378	TRUE	OK	3.3	0.0275	0.07118	0.585	1.322	0.661	2.6	2.0	1.1	4.9	6.3	3.0
J075	chr15	60351819	60352382	TRUE	OK	45537.9	0.000594	0.7871	0.944	-0.011	-0.005	45344.0	46391.1	46978.9	43176.1	49737.5	41599.9
J076	chr15	60352476	60354153	TRUE	OK	48684.0	0.000374	0.03208	0.4626	-0.070	-0.035	49269.3	50039.5	51378.8	44885.9	52384.6	44145.9
J077	chr15	60354213	60355918	TRUE	OK	42039.0	0.000793	0.1572	0.6944	-0.067	-0.033	43547.6	43059.4	43473.7	38701.2	45135.8	38316.6
J078	chr15	60355998	60357145	TRUE	OK	49403.1	0.000691	0.02372	0.4142	-0.102	-0.051	50658.0	51220.4	52348.7	45486.8	51181.0	45523.7
J079	chr15	60357236	60360930	TRUE	OK	5.2	0.0238	0.855	0.9634	0.102	0.051	6.8	5.9	2.2	6.9	6.3	3.0
J080	chr15	60357236	60360940	TRUE	OK	44257.6	0.000493	0.001731	0.1109	-0.119	-0.060	45471.0	45557.7	47868.0	39707.3	46072.2	40869.6
J081	chr15	60361054	60364428	TRUE	OK	43180.4	0.003	0.1017	0.6373	-0.155	-0.077	45791.8	45131.1	45933.6	40809.2	41726.1	39690.4
J082	chr15	60361054	60386027	TRUE	OK	3.3	0.0311	0.5909	0.8803	0.383	0.191	2.6	3.0	3.3	5.9	2.1	3.0
J083	chr15	60361486	60364428	FALSE	LOW_COUNTS_INDEP_FILTER	1.9	0.0683	0.7144	NA	NA	NA	0.0	2.0	3.3	3.0	1.0	2.0
J084	chr15	60363022	60364428	TRUE	OK	31.8	0.0376	0.9083	0.978	-0.019	-0.009	49.5	25.7	21.1	31.6	33.5	29.3
J085	chr15	60364523	60374451	FALSE	LOW_COUNTS_INDEP_FILTER	1.4	0.156	0.487	NA	NA	NA	3.4	0.0	2.2	1.0	0.0	2.0
J086	chr15	60364523	60374618	TRUE	OK	4.2	0.128	0.3771	0.8014	-0.767	-0.384	3.4	3.0	10.0	5.9	2.1	1.0
J087	chr15	60364523	60382341	TRUE	OK	36817.6	0.0111	0.1977	0.722	-0.230	-0.115	40834.3	40367.2	38096.2	36690.0	31071.7	33846.0
J088	chr15	60364523	60386027	TRUE	OK	47.3	0.0343	0.9411	0.9866	0.021	0.011	58.0	35.6	48.8	56.3	32.5	52.5
J089	chr15	60364523	60397257	TRUE	OK	20.7	0.00638	0.1171	0.657	-0.460	-0.230	23.0	28.7	21.1	17.8	14.7	19.2
J090	chr15	60364523	60397942	TRUE	OK	42.6	0.0312	0.2742	0.7601	-0.363	-0.182	44.4	53.4	47.7	41.5	22.0	46.4
J091	chr15	60374682	60382341	TRUE	OK	32.3	0.00425	0.2711	0.7586	-0.258	-0.129	37.5	35.6	33.3	24.7	29.3	33.3
J092	chr15	60382441	60386027	TRUE	OK	38266.4	0.00923	0.1899	0.7172	-0.215	-0.108	40343.0	41947.9	41135.8	37326.5	32590.6	36254.8
J093	chr15	60386086	60390212	TRUE	OK	382.6	0.012	0.2576	0.7524	-0.215	-0.108	406.0	404.8	436.8	397.3	296.4	354.1
J094	chr15	60386086	60391242	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.518	0.5322	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	0.0
J095	chr15	60386086	60393037	TRUE	OK	305.5	0.014	0.2634	0.755	-0.234	-0.117	324.1	305.8	372.5	290.6	229.4	310.7
J096	chr15	60386086	60394573	TRUE	OK	18.1	0.00953	0.08414	0.6104	-0.561	-0.280	17.9	17.8	29.9	10.9	17.8	14.1
J097	chr15	60386086	60396150	TRUE	OK	138.9	0.00131	0.4334	0.8233	-0.091	-0.045	139.0	145.5	150.8	127.5	143.5	127.1
J098	chr15	60386086	60396279	TRUE	OK	114.9	0.0283	0.05504	0.5472	-0.569	-0.284	149.3	144.5	121.9	100.8	62.9	109.9
J099	chr15	60386086	60396372	TRUE	OK	13.9	0.018	0.6378	0.8971	0.197	0.098	11.1	12.9	15.5	17.8	18.9	7.1
J100	chr15	60386086	60397254	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.861	0.3295	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	3.0
J101	chr15	60386086	60397257	TRUE	OK	4984.5	0.00875	0.4183	0.8177	-0.129	-0.064	5456.5	5183.6	5151.4	5016.5	4287.5	4811.5
J102	chr15	60386086	60397870	TRUE	OK	158.8	0.00241	0.1765	0.708	-0.170	-0.085	169.7	161.3	179.6	148.2	142.5	151.3
J103	chr15	60386086	60397942	TRUE	OK	19651.2	0.00888	0.1518	0.6899	-0.229	-0.114	20445.7	21581.7	21943.6	19059.1	16316.2	18561.1
J104	chr15	60386086	60398644	TRUE	OK	31.3	0.0147	0.1744	0.7066	0.396	0.198	23.9	25.7	33.3	42.5	27.2	35.3
J105	chr15	60386086	60402768	TRUE	OK	3.6	0.0768	0.2104	0.7296	-0.994	-0.497	6.8	3.0	4.4	1.0	1.0	5.0
J106	chr15	60390317	60391022	TRUE	OK	4.2	0.0766	0.2328	0.7418	0.911	0.455	1.7	2.0	5.5	4.0	3.1	9.1
J107	chr15	60390317	60391107	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.083	0.3693	NA	NA	NA	1.7	4.9	1.1	2.0	2.1	0.0
J108	chr15	60390317	60397257	TRUE	OK	33.3	0.027	0.6892	0.914	-0.147	-0.074	41.8	39.6	24.4	40.5	27.2	26.2
J109	chr15	60390317	60397942	TRUE	OK	103.7	0.0145	0.3083	0.7747	-0.233	-0.117	114.3	113.8	112.0	108.7	73.3	99.9
J110	chr15	60393440	60396150	TRUE	OK	7.6	0.0123	0.1176	0.6575	0.734	0.367	6.0	5.9	5.5	7.9	9.4	11.1
J111	chr15	60393440	60397942	TRUE	OK	286.8	0.00698	0.7818	0.9425	-0.049	-0.025	315.6	299.9	269.4	290.6	261.9	283.4
J112	chr15	60394695	60396279	TRUE	OK	4.8	0.0197	0.9886	0.9978	-0.006	-0.003	3.4	5.9	5.5	5.9	5.2	3.0
J113	chr15	60396427	60397257	TRUE	OK	315.6	0.00878	0.2609	0.7538	-0.194	-0.097	336.9	362.3	322.6	312.3	257.7	301.6
J114	chr15	60396427	60397942	TRUE	OK	63.3	0.0207	0.1595	0.6959	-0.399	-0.199	75.1	83.1	59.9	69.2	44.0	48.4
J115	chr15	60397338	60397870	TRUE	OK	19.5	0.0378	0.8679	0.9672	0.035	0.017	27.3	10.9	20.0	23.7	16.8	18.2
J116	chr15	60397338	60397942	TRUE	OK	2632.0	0.00869	0.2497	0.7495	-0.183	-0.091	2890.7	2874.4	2721.5	2625.9	2216.6	2463.3
N117	chr15	60364523	60378705	TRUE	OK	11.8	0.00908	0.3455	0.7894	-0.356	-0.178	11.1	15.8	13.3	10.9	12.6	7.1
N118	chr15	60386086	60393012	TRUE	OK	113.5	0.00969	0.5399	0.8622	-0.120	-0.060	124.5	118.8	115.3	97.8	95.3	129.1
N119	chr15	60386086	60393238	TRUE	OK	48.9	0.00321	0.9657	0.9926	0.007	0.004	47.8	49.5	51.0	50.4	45.0	49.4
N120	chr15	60386086	60396966	TRUE	OK	14.5	0.0094	0.06066	0.5615	-0.664	-0.332	18.8	22.8	12.2	10.9	11.5	11.1
N121	chr15	60386086	60398478	TRUE	OK	28.9	0.0159	0.2375	0.7439	-0.351	-0.175	30.7	38.6	28.8	14.8	28.3	32.3
N122	chr15	60393440	60397257	TRUE	OK	19.2	0.044	0.8079	0.9498	0.065	0.033	28.1	11.9	16.6	21.7	14.7	22.2

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000182718.16
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE