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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr4 | 40749924 | 40749954 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.211 | 0.01121 | NA | NA | NA | 5.0 | 5.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E002 | chr4 | 40749954 | 40749963 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.241 | 0.01039 | NA | NA | NA | 5.0 | 6.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E003 | chr4 | 40749963 | 40750300 | TRUE | OK | 6.3 | 0.0316 | 9.201e-08 | 4.607e-05 | -4.965 | -2.482 | 13.0 | 18.0 | 7.0 | 0.0 | 1.0 | 0.0 |
| E004 | chr4 | 40750602 | 40750991 | TRUE | OK | 11.3 | 0.0135 | 7.62e-17 | 2.081e-13 | -28.166 | -14.083 | 25.0 | 27.0 | 18.0 | 0.0 | 0.0 | 0.0 |
| E005 | chr4 | 40760433 | 40760492 | TRUE | OK | 3.9 | 0.0395 | 2.263e-06 | 0.0007166 | -26.506 | -13.253 | 10.0 | 6.0 | 8.0 | 0.0 | 0.0 | 0.0 |
| E006 | chr4 | 40761170 | 40761301 | TRUE | OK | 3.8 | 0.0763 | 1.115e-05 | 0.002673 | -26.498 | -13.249 | 12.0 | 4.0 | 8.0 | 0.0 | 0.0 | 0.0 |
| E007 | chr4 | 40762605 | 40762708 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E008 | chr4 | 40773055 | 40773238 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.1 | 0.848 | 0.7076 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E009 | chr4 | 40774264 | 40774417 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.232 | 0.002056 | NA | NA | NA | 7.0 | 1.0 | 8.0 | 0.0 | 0.0 | 0.0 |
| E010 | chr4 | 40774766 | 40774950 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.4 | 0.056 | 0.0002224 | NA | NA | NA | 7.0 | 4.0 | 4.0 | 0.0 | 0.0 | 0.0 |
| E011 | chr4 | 40774950 | 40775456 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.356 | 0.3434 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E012 | chr4 | 40776048 | 40776074 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.124 | 0.003641 | NA | NA | NA | 7.0 | 2.0 | 2.0 | 0.0 | 0.0 | 0.0 |
| E013 | chr4 | 40776074 | 40776188 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.0644 | 0.008618 | NA | NA | NA | 6.0 | 3.0 | 3.0 | 1.0 | 0.0 | 0.0 |
| E014 | chr4 | 40776188 | 40776259 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.9 | 0.0643 | 0.01277 | NA | NA | NA | 5.0 | 3.0 | 3.0 | 1.0 | 0.0 | 0.0 |
| E015 | chr4 | 40776259 | 40776476 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.359 | 0.8679 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| E016 | chr4 | 40790601 | 40790745 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.307 | 0.1256 | NA | NA | NA | 0.0 | 3.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| E017 | chr4 | 40794374 | 40794476 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.4 | 0.286 | 0.1924 | NA | NA | NA | 2.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E018 | chr4 | 40798786 | 40798873 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.142 | 0.02831 | NA | NA | NA | 1.0 | 2.0 | 3.0 | 0.0 | 0.0 | 0.0 |
| E019 | chr4 | 40798873 | 40798904 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.9 | 0.186 | 0.05323 | NA | NA | NA | 1.0 | 1.0 | 3.0 | 0.0 | 0.0 | 0.0 |
| E020 | chr4 | 40807060 | 40807184 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.283 | 0.8367 | NA | NA | NA | 1.0 | 0.0 | 2.0 | 2.0 | 0.0 | 0.0 |
| E021 | chr4 | 40808285 | 40808306 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.758 | 0.4849 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| E022 | chr4 | 40808306 | 40808503 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.328 | 0.92 | NA | NA | NA | 0.0 | 1.0 | 4.0 | 2.0 | 0.0 | 2.0 |
| E023 | chr4 | 40808503 | 40808543 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.153 | 0.2092 | NA | NA | NA | 0.0 | 1.0 | 1.0 | 2.0 | 0.0 | 3.0 |
| E024 | chr4 | 40808543 | 40809985 | TRUE | OK | 8.1 | 0.0175 | 0.0403 | 0.4995 | -1.035 | -0.518 | 14.0 | 14.0 | 8.0 | 5.0 | 3.0 | 6.0 |
| E025 | chr4 | 40809985 | 40811184 | TRUE | OK | 152.1 | 0.00486 | 2.906e-22 | 1.329e-18 | 3.219 | 1.578 | 171.0 | 162.0 | 126.0 | 166.0 | 161.0 | 133.0 |
| J026 | chr4 | 40750300 | 40750602 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.0338 | 8.278e-05 | NA | NA | NA | 6.0 | 6.0 | 4.0 | 0.0 | 0.0 | 0.0 |
| J027 | chr4 | 40750991 | 40760433 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.0 | 0.0343 | 1.965e-05 | NA | NA | NA | 9.0 | 5.0 | 5.0 | 0.0 | 0.0 | 0.0 |
| J028 | chr4 | 40760492 | 40761170 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.0398 | 9.101e-05 | NA | NA | NA | 6.0 | 4.0 | 6.0 | 0.0 | 0.0 | 0.0 |
| J029 | chr4 | 40761301 | 40774264 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.469 | 0.0194 | NA | NA | NA | 7.0 | 0.0 | 6.0 | 0.0 | 0.0 | 0.0 |
| J030 | chr4 | 40762708 | 40773055 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J031 | chr4 | 40773238 | 40774264 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J032 | chr4 | 40774417 | 40774766 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.236 | 0.1683 | NA | NA | NA | 0.0 | 1.0 | 2.0 | 0.0 | 0.0 | 0.0 |
| J033 | chr4 | 40774950 | 40776048 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.0797 | 0.003371 | NA | NA | NA | 6.0 | 2.0 | 2.0 | 0.0 | 0.0 | 0.0 |
| J034 | chr4 | 40776259 | 40790601 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.253 | 0.3148 | NA | NA | NA | 0.0 | 1.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J035 | chr4 | 40776259 | 40794374 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.57 | 0.4451 | NA | NA | NA | 2.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J036 | chr4 | 40790745 | 40794374 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.539 | 0.6752 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J037 | chr4 | 40794476 | 40798786 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.539 | 0.6752 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J038 | chr4 | 40798904 | 40807060 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.4 | 0.785 | 0.4826 | NA | NA | NA | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 |
| J039 | chr4 | 40798904 | 40808306 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.503 | 0.6607 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J040 | chr4 | 40807184 | 40808285 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J041 | chr4 | 40807184 | 40808306 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.4 | 0.785 | 0.4826 | NA | NA | NA | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 | 0.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000179299.17 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |