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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr12 | 130872036 | 130872046 | TRUE | OK | 160.3 | 0.00365 | 0.9603 | 0.9913 | -0.014 | -0.007 | 158.0 | 168.0 | 129.0 | 166.0 | 169.0 | 175.0 |
| E002 | chr12 | 130872046 | 130872065 | TRUE | OK | 414.1 | 0.00169 | 0.8997 | 0.9758 | -0.017 | -0.008 | 435.0 | 413.0 | 331.0 | 423.0 | 457.0 | 437.0 |
| E003 | chr12 | 130872065 | 130872069 | TRUE | OK | 433.4 | 0.00161 | 0.9047 | 0.9771 | -0.016 | -0.008 | 460.0 | 429.0 | 345.0 | 438.0 | 481.0 | 460.0 |
| E004 | chr12 | 130872069 | 130872075 | TRUE | OK | 654.0 | 0.0032 | 0.6472 | 0.9 | -0.056 | -0.028 | 751.0 | 639.0 | 508.0 | 657.0 | 698.0 | 701.0 |
| E005 | chr12 | 130872075 | 130872081 | TRUE | OK | 1048.9 | 0.00204 | 0.5596 | 0.8694 | -0.056 | -0.028 | 1157.0 | 1032.0 | 846.0 | 1087.0 | 1126.0 | 1084.0 |
| E006 | chr12 | 130872081 | 130872095 | TRUE | OK | 2279.5 | 0.00325 | 0.4135 | 0.8157 | -0.088 | -0.044 | 2550.0 | 2173.0 | 1939.0 | 2395.0 | 2345.0 | 2358.0 |
| E007 | chr12 | 130872095 | 130872126 | TRUE | OK | 5888.8 | 0.00408 | 0.3645 | 0.7966 | -0.106 | -0.053 | 6712.0 | 5664.0 | 4926.0 | 6104.0 | 6015.0 | 6154.0 |
| E008 | chr12 | 130872126 | 130872583 | TRUE | OK | 209.3 | 0.00707 | 0.03233 | 0.4639 | 0.344 | 0.172 | 183.0 | 193.0 | 141.0 | 218.0 | 246.0 | 277.0 |
| E009 | chr12 | 130872583 | 130872617 | TRUE | OK | 7840.7 | 0.00438 | 0.4484 | 0.8288 | -0.094 | -0.047 | 8912.0 | 7463.0 | 6540.0 | 8198.0 | 8051.0 | 8199.0 |
| E010 | chr12 | 130872617 | 130872629 | TRUE | OK | 9487.7 | 0.00457 | 0.4468 | 0.8283 | -0.096 | -0.048 | 10651.0 | 9047.0 | 7995.0 | 10063.0 | 9730.0 | 9801.0 |
| E011 | chr12 | 130872629 | 130872835 | TRUE | OK | 152.1 | 0.022 | 0.2356 | 0.7431 | 0.283 | 0.141 | 179.0 | 135.0 | 79.0 | 181.0 | 155.0 | 196.0 |
| E012 | chr12 | 130872835 | 130872912 | TRUE | OK | 14495.2 | 0.00393 | 0.5036 | 0.8491 | -0.081 | -0.040 | 15902.0 | 13950.0 | 12115.0 | 15253.0 | 15278.0 | 14961.0 |
| E013 | chr12 | 130872912 | 130872920 | TRUE | OK | 14012.5 | 0.00395 | 0.4058 | 0.8126 | -0.098 | -0.049 | 15531.0 | 13512.0 | 11740.0 | 14734.0 | 14700.0 | 14354.0 |
| E014 | chr12 | 130872920 | 130872964 | TRUE | OK | 51.8 | 0.00458 | 0.7045 | 0.9186 | -0.083 | -0.041 | 62.0 | 52.0 | 38.0 | 58.0 | 53.0 | 51.0 |
| E015 | chr12 | 130872964 | 130873002 | TRUE | OK | 350.2 | 0.00308 | 2.021e-22 | 9.352e-19 | 1.116 | 0.558 | 215.0 | 207.0 | 186.0 | 503.0 | 496.0 | 486.0 |
| E016 | chr12 | 130873002 | 130873102 | TRUE | OK | 19664.6 | 0.00425 | 0.5429 | 0.8632 | -0.078 | -0.039 | 21975.0 | 18680.0 | 16165.0 | 20739.0 | 21133.0 | 20027.0 |
| E017 | chr12 | 130873102 | 130873128 | TRUE | OK | 16460.6 | 0.00403 | 0.6318 | 0.8948 | -0.061 | -0.030 | 18535.0 | 15673.0 | 13280.0 | 17527.0 | 17819.0 | 16587.0 |
| E018 | chr12 | 130873128 | 130873839 | TRUE | OK | 88.4 | 0.00443 | 0.1337 | 0.6737 | -0.258 | -0.129 | 107.0 | 87.0 | 81.0 | 91.0 | 79.0 | 90.0 |
| E019 | chr12 | 130873839 | 130874033 | TRUE | OK | 34.1 | 0.0267 | 0.9086 | 0.9781 | 0.005 | 0.003 | 51.0 | 20.0 | 27.0 | 42.0 | 38.0 | 30.0 |
| E020 | chr12 | 130874033 | 130874084 | TRUE | OK | 24.6 | 0.00736 | 0.4992 | 0.8473 | -0.194 | -0.097 | 33.0 | 21.0 | 21.0 | 23.0 | 24.0 | 27.0 |
| E021 | chr12 | 130874084 | 130874545 | TRUE | OK | 347.1 | 0.00547 | 1.23e-08 | 7.738e-06 | 0.791 | 0.395 | 221.0 | 258.0 | 221.0 | 431.0 | 476.0 | 465.0 |
| E022 | chr12 | 130874545 | 130874550 | TRUE | OK | 13018.4 | 0.00421 | 0.8783 | 0.9701 | -0.025 | -0.013 | 14851.0 | 12176.0 | 10271.0 | 14039.0 | 14288.0 | 13050.0 |
| E023 | chr12 | 130874550 | 130874733 | TRUE | OK | 21912.8 | 0.00503 | 0.4808 | 0.8408 | -0.092 | -0.046 | 25303.0 | 20408.0 | 17848.0 | 23180.0 | 24274.0 | 21387.0 |
| E024 | chr12 | 130875611 | 130875639 | TRUE | OK | 12524.8 | 0.00441 | 0.1509 | 0.689 | -0.165 | -0.083 | 15143.0 | 11610.0 | 10577.0 | 12996.0 | 13667.0 | 11753.0 |
| E025 | chr12 | 130875639 | 130875654 | TRUE | OK | 11863.7 | 0.00325 | 0.08504 | 0.6121 | -0.169 | -0.084 | 14168.0 | 11099.0 | 10112.0 | 12158.0 | 13083.0 | 11085.0 |
| E026 | chr12 | 130875654 | 130875665 | TRUE | OK | 11765.0 | 0.00284 | 0.09276 | 0.625 | -0.153 | -0.077 | 13954.0 | 10974.0 | 10002.0 | 11982.0 | 13160.0 | 11015.0 |
| E027 | chr12 | 130875665 | 130875709 | TRUE | OK | 12771.0 | 0.00206 | 0.1744 | 0.7065 | -0.104 | -0.052 | 14754.0 | 11850.0 | 10737.0 | 12955.0 | 14693.0 | 12110.0 |
| E028 | chr12 | 130875709 | 130875782 | TRUE | OK | 14995.3 | 0.00159 | 0.2524 | 0.7504 | -0.073 | -0.036 | 16768.0 | 13856.0 | 12708.0 | 14930.0 | 17882.0 | 14256.0 |
| E029 | chr12 | 130875782 | 130875784 | TRUE | OK | 133.9 | 0.00978 | 0.02878 | 0.4455 | 0.421 | 0.211 | 99.0 | 110.0 | 108.0 | 142.0 | 159.0 | 182.0 |
| E030 | chr12 | 130875881 | 130875924 | TRUE | OK | 14220.9 | 0.00209 | 0.6166 | 0.8892 | 0.048 | 0.024 | 15202.0 | 12913.0 | 11628.0 | 14197.0 | 17944.0 | 13740.0 |
| E031 | chr12 | 130875924 | 130875963 | TRUE | OK | 13899.4 | 0.00225 | 0.3235 | 0.7809 | 0.090 | 0.045 | 14500.0 | 12592.0 | 11264.0 | 13886.0 | 17839.0 | 13550.0 |
| E032 | chr12 | 130875963 | 130876234 | TRUE | OK | 16648.2 | 0.00365 | 0.3141 | 0.7769 | 0.118 | 0.059 | 17171.0 | 15145.0 | 13362.0 | 16439.0 | 21839.0 | 16176.0 |
| E033 | chr12 | 130876234 | 130876281 | TRUE | OK | 1749.4 | 0.00199 | 0.281 | 0.7631 | -0.087 | -0.043 | 2046.0 | 1690.0 | 1396.0 | 1772.0 | 2034.0 | 1635.0 |
| E034 | chr12 | 130876281 | 130876733 | TRUE | OK | 1998.4 | 0.00181 | 0.1411 | 0.6803 | -0.117 | -0.059 | 2220.0 | 1917.0 | 1755.0 | 2005.0 | 2112.0 | 2042.0 |
| E035 | chr12 | 130876733 | 130877676 | TRUE | OK | 2518.9 | 0.0018 | 0.7182 | 0.9232 | 0.036 | 0.018 | 2617.0 | 2343.0 | 2069.0 | 2437.0 | 3233.0 | 2452.0 |
| E036 | chr12 | 130877676 | 130877678 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.11 | 0.7214 | NA | NA | NA | 2.0 | 0.0 | 2.0 | 0.0 | 3.0 | 3.0 |
| J037 | chr12 | 130872126 | 130872583 | TRUE | OK | 5740.5 | 0.00382 | 0.3261 | 0.782 | -0.111 | -0.055 | 6561.0 | 5519.0 | 4814.0 | 5939.0 | 5863.0 | 5984.0 |
| J038 | chr12 | 130872126 | 130872835 | TRUE | OK | 143.1 | 0.00617 | 0.5604 | 0.8697 | 0.087 | 0.044 | 143.0 | 139.0 | 110.0 | 162.0 | 142.0 | 167.0 |
| J039 | chr12 | 130872617 | 130872835 | TRUE | OK | 3.9 | 0.11 | 0.9237 | 0.982 | 0.073 | 0.037 | 5.0 | 5.0 | 1.0 | 5.0 | 1.0 | 7.0 |
| J040 | chr12 | 130872629 | 130872835 | TRUE | OK | 9417.2 | 0.00428 | 0.4202 | 0.8184 | -0.098 | -0.049 | 10564.0 | 8978.0 | 7960.0 | 9984.0 | 9669.0 | 9702.0 |
| J041 | chr12 | 130872629 | 130875654 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.169 | 0.9299 | NA | NA | NA | 0.0 | 2.0 | 0.0 | 1.0 | 1.0 | 0.0 |
| J042 | chr12 | 130872912 | 130873002 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.0579 | 0.9653 | NA | NA | NA | 4.0 | 0.0 | 3.0 | 2.0 | 2.0 | 4.0 |
| J043 | chr12 | 130872920 | 130873002 | TRUE | OK | 13200.4 | 0.00388 | 0.4112 | 0.8148 | -0.096 | -0.048 | 14749.0 | 12723.0 | 10974.0 | 13936.0 | 13833.0 | 13483.0 |
| J044 | chr12 | 130872964 | 130874545 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.642 | 0.4065 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 |
| J045 | chr12 | 130873128 | 130874033 | TRUE | OK | 3.2 | 0.0994 | 0.9685 | 0.9932 | -0.037 | -0.019 | 3.0 | 1.0 | 5.0 | 2.0 | 2.0 | 6.0 |
| J046 | chr12 | 130873128 | 130874545 | TRUE | OK | 12860.5 | 0.00391 | 0.7921 | 0.9454 | -0.036 | -0.018 | 14722.0 | 12067.0 | 10172.0 | 13805.0 | 14108.0 | 12852.0 |
| J047 | chr12 | 130873128 | 130874550 | TRUE | OK | 30.9 | 0.018 | 0.9458 | 0.9877 | 0.012 | 0.006 | 38.0 | 28.0 | 22.0 | 42.0 | 25.0 | 33.0 |
| J048 | chr12 | 130874084 | 130874545 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.0637 | 0.1627 | NA | NA | NA | 0.0 | 2.0 | 2.0 | 2.0 | 3.0 | 6.0 |
| J049 | chr12 | 130874733 | 130875611 | TRUE | OK | 11385.4 | 0.00404 | 0.1227 | 0.663 | -0.170 | -0.085 | 13829.0 | 10565.0 | 9630.0 | 11750.0 | 12430.0 | 10658.0 |
| J050 | chr12 | 130875782 | 130875881 | TRUE | OK | 10565.4 | 0.00137 | 0.5309 | 0.859 | -0.033 | -0.016 | 11647.0 | 9714.0 | 8868.0 | 10413.0 | 12925.0 | 10094.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000132341.12 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |