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Normalized Counts Table (ENSG00000179299.17)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr4	40749924	40749954	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.211	0.01121	NA	NA	NA	4.3	4.9	0.0	0.0	0.0	0.0
E002	chr4	40749954	40749963	FALSE	LOW_COUNTS_INDEP_FILTER	1.7	0.241	0.01039	NA	NA	NA	4.3	5.9	0.0	0.0	0.0	0.0
E003	chr4	40749963	40750300	TRUE	OK	6.3	0.0316	9.201e-08	4.607e-05	-4.965	-2.482	11.1	17.8	7.8	0.0	1.0	0.0
E004	chr4	40750602	40750991	TRUE	OK	11.3	0.0135	7.62e-17	2.081e-13	-28.166	-14.083	21.3	26.7	20.0	0.0	0.0	0.0
E005	chr4	40760433	40760492	TRUE	OK	3.9	0.0395	2.263e-06	0.0007166	-26.506	-13.253	8.5	5.9	8.9	0.0	0.0	0.0
E006	chr4	40761170	40761301	TRUE	OK	3.8	0.0763	1.115e-05	0.002673	-26.498	-13.249	10.2	4.0	8.9	0.0	0.0	0.0
E007	chr4	40762605	40762708	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E008	chr4	40773055	40773238	FALSE	LOW_COUNTS_INDEP_FILTER	0.1	0.848	0.7076	NA	NA	NA	0.9	0.0	0.0	0.0	0.0	0.0
E009	chr4	40774264	40774417	FALSE	LOW_COUNTS_INDEP_FILTER	2.6	0.232	0.002056	NA	NA	NA	6.0	1.0	8.9	0.0	0.0	0.0
E010	chr4	40774766	40774950	FALSE	LOW_COUNTS_INDEP_FILTER	2.4	0.056	0.0002224	NA	NA	NA	6.0	4.0	4.4	0.0	0.0	0.0
E011	chr4	40774950	40775456	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.356	0.3434	NA	NA	NA	0.9	1.0	0.0	0.0	0.0	0.0
E012	chr4	40776048	40776074	FALSE	LOW_COUNTS_INDEP_FILTER	1.7	0.124	0.003641	NA	NA	NA	6.0	2.0	2.2	0.0	0.0	0.0
E013	chr4	40776074	40776188	FALSE	LOW_COUNTS_INDEP_FILTER	2.1	0.0644	0.008618	NA	NA	NA	5.1	3.0	3.3	1.0	0.0	0.0
E014	chr4	40776188	40776259	FALSE	LOW_COUNTS_INDEP_FILTER	1.9	0.0643	0.01277	NA	NA	NA	4.3	3.0	3.3	1.0	0.0	0.0
E015	chr4	40776259	40776476	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.359	0.8679	NA	NA	NA	0.0	1.0	0.0	1.0	0.0	0.0
E016	chr4	40790601	40790745	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.307	0.1256	NA	NA	NA	0.0	3.0	1.1	0.0	0.0	0.0
E017	chr4	40794374	40794476	FALSE	LOW_COUNTS_INDEP_FILTER	0.4	0.286	0.1924	NA	NA	NA	1.7	1.0	0.0	0.0	0.0	0.0
E018	chr4	40798786	40798873	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.142	0.02831	NA	NA	NA	0.9	2.0	3.3	0.0	0.0	0.0
E019	chr4	40798873	40798904	FALSE	LOW_COUNTS_INDEP_FILTER	0.9	0.186	0.05323	NA	NA	NA	0.9	1.0	3.3	0.0	0.0	0.0
E020	chr4	40807060	40807184	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.283	0.8367	NA	NA	NA	0.9	0.0	2.2	2.0	0.0	0.0
E021	chr4	40808285	40808306	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.758	0.4849	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
E022	chr4	40808306	40808503	FALSE	LOW_COUNTS_INDEP_FILTER	1.6	0.328	0.92	NA	NA	NA	0.0	1.0	4.4	2.0	0.0	2.0
E023	chr4	40808503	40808543	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.153	0.2092	NA	NA	NA	0.0	1.0	1.1	2.0	0.0	3.0
E024	chr4	40808543	40809985	TRUE	OK	8.1	0.0175	0.0403	0.4995	-1.035	-0.518	11.9	13.9	8.9	4.9	3.1	6.1
E025	chr4	40809985	40811184	TRUE	OK	152.1	0.00486	2.906e-22	1.329e-18	3.219	1.578	145.9	160.3	139.7	164.1	168.7	134.2
J026	chr4	40750300	40750602	FALSE	LOW_COUNTS_INDEP_FILTER	2.6	0.0338	8.278e-05	NA	NA	NA	5.1	5.9	4.4	0.0	0.0	0.0
J027	chr4	40750991	40760433	FALSE	LOW_COUNTS_INDEP_FILTER	3.0	0.0343	1.965e-05	NA	NA	NA	7.7	4.9	5.5	0.0	0.0	0.0
J028	chr4	40760492	40761170	FALSE	LOW_COUNTS_INDEP_FILTER	2.6	0.0398	9.101e-05	NA	NA	NA	5.1	4.0	6.7	0.0	0.0	0.0
J029	chr4	40761301	40774264	FALSE	LOW_COUNTS_INDEP_FILTER	2.1	0.469	0.0194	NA	NA	NA	6.0	0.0	6.7	0.0	0.0	0.0
J030	chr4	40762708	40773055	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J031	chr4	40773238	40774264	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J032	chr4	40774417	40774766	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.236	0.1683	NA	NA	NA	0.0	1.0	2.2	0.0	0.0	0.0
J033	chr4	40774950	40776048	FALSE	LOW_COUNTS_INDEP_FILTER	1.6	0.0797	0.003371	NA	NA	NA	5.1	2.0	2.2	0.0	0.0	0.0
J034	chr4	40776259	40790601	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.253	0.3148	NA	NA	NA	0.0	1.0	1.1	0.0	0.0	0.0
J035	chr4	40776259	40794374	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.57	0.4451	NA	NA	NA	1.7	0.0	0.0	0.0	0.0	0.0
J036	chr4	40790745	40794374	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.539	0.6752	NA	NA	NA	0.0	1.0	0.0	0.0	0.0	0.0
J037	chr4	40794476	40798786	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.539	0.6752	NA	NA	NA	0.0	1.0	0.0	0.0	0.0	0.0
J038	chr4	40798904	40807060	FALSE	LOW_COUNTS_INDEP_FILTER	0.4	0.785	0.4826	NA	NA	NA	0.0	0.0	2.2	0.0	0.0	0.0
J039	chr4	40798904	40808306	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.503	0.6607	NA	NA	NA	0.0	0.0	1.1	0.0	0.0	0.0
J040	chr4	40807184	40808285	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J041	chr4	40807184	40808306	FALSE	LOW_COUNTS_INDEP_FILTER	0.4	0.785	0.4826	NA	NA	NA	0.0	0.0	2.2	0.0	0.0	0.0

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000179299.17
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE