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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
E001 | chr8 | 98024850 | 98025738 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.1 | 0.0384 | 0.8582 | NA | NA | NA | 3.0 | 4.0 | 2.0 | 4.0 | 4.0 | 2.0 |
E002 | chr8 | 98041718 | 98041720 | TRUE | OK | 79.1 | 0.00268 | 0.001005 | 0.07862 | -0.521 | -0.261 | 104.0 | 92.0 | 84.0 | 58.0 | 81.0 | 59.0 |
E003 | chr8 | 98041720 | 98041799 | TRUE | OK | 5597.6 | 0.00408 | 0.1333 | 0.6733 | -0.153 | -0.076 | 6779.0 | 5521.0 | 5256.0 | 5180.0 | 6587.0 | 4454.0 |
E004 | chr8 | 98041799 | 98041806 | TRUE | OK | 5638.6 | 0.0041 | 0.1274 | 0.6675 | -0.156 | -0.078 | 6838.0 | 5568.0 | 5293.0 | 5215.0 | 6629.0 | 4483.0 |
E005 | chr8 | 98041806 | 98041850 | TRUE | OK | 8235.0 | 0.00496 | 0.9142 | 0.9796 | 0.001 | 0.000 | 9746.0 | 7999.0 | 7011.0 | 7741.0 | 10295.0 | 6913.0 |
E006 | chr8 | 98042644 | 98042718 | TRUE | OK | 19150.9 | 0.00339 | 0.6634 | 0.9055 | 0.055 | 0.028 | 21536.0 | 18609.0 | 16707.0 | 17807.0 | 23634.0 | 17092.0 |
E007 | chr8 | 98042718 | 98042775 | TRUE | OK | 24350.7 | 0.00399 | 0.574 | 0.8746 | 0.070 | 0.035 | 27250.0 | 23933.0 | 21166.0 | 22782.0 | 29548.0 | 22049.0 |
E008 | chr8 | 98042775 | 98042830 | TRUE | OK | 400.6 | 0.00498 | 2.932e-22 | 1.329e-18 | 1.306 | 0.653 | 231.0 | 254.0 | 200.0 | 584.0 | 662.0 | 459.0 |
E009 | chr8 | 98042830 | 98043085 | TRUE | OK | 197.0 | 0.00604 | 0.03561 | 0.4798 | 0.332 | 0.166 | 206.0 | 188.0 | 130.0 | 210.0 | 278.0 | 176.0 |
E010 | chr8 | 98043085 | 98043207 | TRUE | OK | 134.9 | 0.00404 | 0.0001855 | 0.02454 | 0.559 | 0.280 | 129.0 | 111.0 | 86.0 | 156.0 | 202.0 | 127.0 |
E011 | chr8 | 98043446 | 98043674 | TRUE | OK | 104.4 | 0.00406 | 0.01424 | 0.3375 | 0.378 | 0.189 | 102.0 | 86.0 | 83.0 | 112.0 | 122.0 | 123.0 |
E012 | chr8 | 98043938 | 98044076 | TRUE | OK | 87.5 | 0.00804 | 0.1154 | 0.655 | 0.296 | 0.148 | 107.0 | 70.0 | 60.0 | 93.0 | 108.0 | 92.0 |
E013 | chr8 | 98044076 | 98044132 | TRUE | OK | 105.8 | 0.00494 | 0.1209 | 0.6611 | 0.250 | 0.125 | 125.0 | 93.0 | 73.0 | 111.0 | 135.0 | 103.0 |
E014 | chr8 | 98044132 | 98044241 | TRUE | OK | 132.7 | 0.00425 | 0.09344 | 0.6256 | 0.246 | 0.123 | 150.0 | 123.0 | 92.0 | 144.0 | 167.0 | 126.0 |
E015 | chr8 | 98044432 | 98044826 | TRUE | OK | 253.6 | 0.00402 | 0.02402 | 0.4167 | 0.281 | 0.141 | 266.0 | 241.0 | 180.0 | 275.0 | 302.0 | 266.0 |
E016 | chr8 | 98044826 | 98044867 | TRUE | OK | 140.9 | 0.00269 | 0.4106 | 0.8145 | 0.104 | 0.052 | 152.0 | 145.0 | 110.0 | 148.0 | 164.0 | 131.0 |
E017 | chr8 | 98044867 | 98044942 | TRUE | OK | 788.9 | 0.00173 | 0.9432 | 0.9871 | -0.004 | -0.002 | 796.0 | 813.0 | 741.0 | 686.0 | 963.0 | 735.0 |
E018 | chr8 | 98044942 | 98045088 | TRUE | OK | 32924.1 | 0.00314 | 0.4187 | 0.8179 | -0.092 | -0.045 | 35933.0 | 33176.0 | 29628.0 | 30551.0 | 38775.0 | 30140.0 |
E019 | chr8 | 98045088 | 98045346 | TRUE | OK | 711.8 | 0.003 | 0.00043 | 0.04476 | 0.347 | 0.173 | 667.0 | 660.0 | 545.0 | 776.0 | 855.0 | 775.0 |
E020 | chr8 | 98045346 | 98045399 | TRUE | OK | 21080.5 | 0.00558 | 0.1794 | 0.7101 | -0.189 | -0.094 | 24080.0 | 21714.0 | 19124.0 | 20078.0 | 23092.0 | 19053.0 |
E021 | chr8 | 98045399 | 98045507 | TRUE | OK | 813.7 | 0.00293 | 0.07887 | 0.6006 | 0.168 | 0.084 | 738.0 | 839.0 | 700.0 | 779.0 | 1014.0 | 807.0 |
E022 | chr8 | 98045507 | 98045514 | TRUE | OK | 9209.5 | 0.00316 | 0.2653 | 0.7561 | -0.119 | -0.059 | 10561.0 | 9631.0 | 8265.0 | 8778.0 | 9900.0 | 8435.0 |
E023 | chr8 | 98045514 | 98045544 | TRUE | OK | 8855.2 | 0.00303 | 0.282 | 0.7635 | -0.113 | -0.056 | 10131.0 | 9255.0 | 7942.0 | 8446.0 | 9539.0 | 8115.0 |
E024 | chr8 | 98045544 | 98045545 | TRUE | OK | 570.2 | 0.00171 | 0.1187 | 0.659 | 0.125 | 0.063 | 589.0 | 559.0 | 482.0 | 584.0 | 658.0 | 560.0 |
E025 | chr8 | 98045545 | 98045546 | TRUE | OK | 563.7 | 0.00167 | 0.09965 | 0.6347 | 0.132 | 0.066 | 576.0 | 555.0 | 476.0 | 576.0 | 653.0 | 556.0 |
E026 | chr8 | 98045546 | 98045548 | TRUE | OK | 561.5 | 0.0018 | 0.0991 | 0.6339 | 0.135 | 0.068 | 574.0 | 554.0 | 471.0 | 576.0 | 649.0 | 555.0 |
E027 | chr8 | 98045548 | 98045550 | TRUE | OK | 490.8 | 0.0018 | 0.1972 | 0.7215 | 0.107 | 0.053 | 504.0 | 493.0 | 415.0 | 493.0 | 562.0 | 487.0 |
E028 | chr8 | 98045714 | 98046469 | TRUE | OK | 87.2 | 0.00298 | 0.434 | 0.8236 | 0.129 | 0.064 | 89.0 | 81.0 | 78.0 | 78.0 | 119.0 | 78.0 |
J029 | chr8 | 98025738 | 98044942 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.9 | 0.143 | 0.2364 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 1.0 | 3.0 | 0.0 |
J030 | chr8 | 98041850 | 98042644 | TRUE | OK | 8141.0 | 0.00483 | 0.7429 | 0.9305 | -0.023 | -0.012 | 9700.0 | 7958.0 | 6981.0 | 7553.0 | 10160.0 | 6790.0 |
J031 | chr8 | 98042718 | 98044942 | TRUE | OK | 592.2 | 0.00563 | 0.2418 | 0.7459 | -0.167 | -0.084 | 764.0 | 618.0 | 508.0 | 584.0 | 616.0 | 500.0 |
J032 | chr8 | 98042775 | 98044826 | TRUE | OK | 18.3 | 0.0184 | 0.3446 | 0.789 | -0.355 | -0.178 | 22.0 | 29.0 | 11.0 | 14.0 | 19.0 | 16.0 |
J033 | chr8 | 98042775 | 98044942 | TRUE | OK | 21922.6 | 0.00261 | 0.6604 | 0.9045 | 0.046 | 0.023 | 24563.0 | 21543.0 | 19137.0 | 20347.0 | 26590.0 | 19911.0 |
J034 | chr8 | 98042775 | 98045346 | TRUE | OK | 55.4 | 0.0118 | 0.1344 | 0.6744 | 0.364 | 0.182 | 66.0 | 43.0 | 37.0 | 46.0 | 76.0 | 67.0 |
J035 | chr8 | 98043207 | 98044076 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.269 | 0.2631 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 3.0 | 0.0 | 1.0 |
J036 | chr8 | 98043674 | 98043938 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.4 | 0.245 | 0.9866 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 |
J037 | chr8 | 98045088 | 98045346 | TRUE | OK | 20790.9 | 0.0053 | 0.1594 | 0.6959 | -0.192 | -0.096 | 23766.0 | 21427.0 | 18894.0 | 19795.0 | 22752.0 | 18761.0 |
J038 | chr8 | 98045399 | 98045507 | TRUE | OK | 9204.0 | 0.00297 | 0.249 | 0.7492 | -0.119 | -0.059 | 10554.0 | 9629.0 | 8260.0 | 8775.0 | 9892.0 | 8427.0 |
J039 | chr8 | 98045399 | 98045714 | TRUE | OK | 19.3 | 0.0326 | 0.8926 | 0.9739 | -0.033 | -0.016 | 28.0 | 13.0 | 18.0 | 10.0 | 27.0 | 21.0 |
N040 | chr8 | 98030614 | 98032245 | TRUE | OK | 12.2 | 0.0116 | 0.4431 | 0.827 | -0.303 | -0.152 | 11.0 | 15.0 | 14.0 | 14.0 | 9.0 | 10.0 |
N041 | chr8 | 98033176 | 98033560 | TRUE | OK | 15.8 | 0.0101 | 0.9602 | 0.9913 | -0.016 | -0.008 | 23.0 | 12.0 | 13.0 | 17.0 | 20.0 | 11.0 |
N042 | chr8 | 98033659 | 98035656 | TRUE | OK | 14.2 | 0.0333 | 0.2092 | 0.7287 | -0.581 | -0.290 | 27.0 | 10.0 | 15.0 | 14.0 | 12.0 | 9.0 |
N043 | chr8 | 98042775 | 98045114 | TRUE | OK | 17.5 | 0.00634 | 0.1423 | 0.6816 | -0.459 | -0.229 | 22.0 | 24.0 | 15.0 | 13.0 | 18.0 | 14.0 |
Color Codes | |||||
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NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000156482.11 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |