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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr19 | 14514768 | 14515648 | TRUE | OK | 4147.8 | 0.00968 | 0.3007 | 0.7917 | -0.178 | -0.089 | 4869.9 | 5995.6 | 4664.4 | 3131.3 | 3027.9 | 3197.3 |
E002 | chr19 | 14515648 | 14516112 | TRUE | OK | 4015.3 | 0.000621 | 0.6745 | 0.9118 | 0.019 | 0.009 | 5047.4 | 4811.1 | 4620.1 | 3289.1 | 3134.7 | 3189.6 |
E003 | chr19 | 14516112 | 14516170 | TRUE | OK | 1961.3 | 0.000945 | 0.6263 | 0.8966 | -0.030 | -0.015 | 2502.5 | 2408.7 | 2237.0 | 1608.3 | 1492.4 | 1518.9 |
E004 | chr19 | 14516465 | 14516568 | TRUE | OK | 2705.8 | 0.000694 | 0.2109 | 0.7618 | -0.064 | -0.032 | 3476.7 | 3253.3 | 3202.0 | 2198.0 | 2041.8 | 2063.2 |
E005 | chr19 | 14516568 | 14516607 | TRUE | OK | 2167.3 | 0.00143 | 0.4382 | 0.8355 | -0.055 | -0.027 | 2805.2 | 2496.3 | 2641.9 | 1736.4 | 1674.6 | 1649.4 |
E006 | chr19 | 14516607 | 14516609 | TRUE | OK | 1860.3 | 0.00162 | 0.3027 | 0.7923 | -0.077 | -0.038 | 2417.7 | 2150.1 | 2287.4 | 1511.0 | 1416.0 | 1379.7 |
E007 | chr19 | 14516609 | 14516635 | TRUE | OK | 2077.3 | 0.0022 | 0.5067 | 0.8581 | -0.057 | -0.029 | 2726.3 | 2345.1 | 2547.3 | 1684.8 | 1594.3 | 1566.3 |
E008 | chr19 | 14516635 | 14516684 | TRUE | OK | 2071.1 | 0.00467 | 0.8184 | 0.9548 | -0.033 | -0.016 | 2800.3 | 2207.4 | 2545.3 | 1703.6 | 1590.4 | 1579.8 |
E009 | chr19 | 14516684 | 14516716 | TRUE | OK | 1869.0 | 0.00503 | 0.8051 | 0.9512 | -0.037 | -0.018 | 2533.1 | 1972.8 | 2317.6 | 1507.1 | 1452.3 | 1430.9 |
E010 | chr19 | 14516716 | 14516718 | TRUE | OK | 1420.8 | 0.00711 | 0.6897 | 0.9166 | 0.047 | 0.024 | 1929.6 | 1412.9 | 1739.5 | 1184.4 | 1152.6 | 1106.1 |
E011 | chr19 | 14516718 | 14517046 | TRUE | OK | 4330.0 | 0.00566 | 0.5789 | 0.881 | -0.074 | -0.037 | 5815.5 | 4695.4 | 5382.6 | 3544.3 | 3250.2 | 3292.1 |
E012 | chr19 | 14517478 | 14517569 | TRUE | OK | 34.6 | 0.0243 | 0.2101 | 0.7613 | 0.434 | 0.217 | 37.5 | 33.4 | 39.3 | 18.9 | 39.2 | 39.6 |
E013 | chr19 | 14517590 | 14517833 | TRUE | OK | 94.1 | 0.013 | 0.03103 | 0.5568 | 0.483 | 0.242 | 111.4 | 76.1 | 106.8 | 81.4 | 107.7 | 81.2 |
E014 | chr19 | 14518138 | 14518268 | TRUE | OK | 2897.9 | 0.00527 | 0.2641 | 0.7805 | -0.140 | -0.070 | 3884.9 | 3192.8 | 3728.7 | 2375.7 | 2023.2 | 2182.2 |
E015 | chr19 | 14518268 | 14518397 | TRUE | OK | 2131.2 | 0.00692 | 0.3961 | 0.8225 | -0.121 | -0.060 | 2871.3 | 2301.3 | 2756.8 | 1776.1 | 1426.8 | 1655.2 |
E016 | chr19 | 14527366 | 14527686 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0772 | 0.4246 | NA | NA | NA | 3.0 | 1.0 | 4.0 | 1.0 | 1.0 | 1.0 |
E017 | chr19 | 14527686 | 14527725 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.7 | 0.0242 | 0.734 | NA | NA | NA | 7.9 | 9.4 | 8.1 | 3.0 | 7.8 | 3.9 |
E018 | chr19 | 14527725 | 14527810 | TRUE | OK | 25.0 | 0.00866 | 0.2125 | 0.7624 | 0.349 | 0.174 | 33.5 | 24.0 | 24.2 | 18.9 | 26.4 | 23.2 |
E019 | chr19 | 14529124 | 14529193 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.396 | 0.7968 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
E020 | chr19 | 14529209 | 14529221 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.117 | 0.8449 | NA | NA | NA | 3.0 | 1.0 | 1.0 | 1.0 | 0.0 | 2.9 |
E021 | chr19 | 14529221 | 14529251 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.0762 | 0.2107 | NA | NA | NA | 3.0 | 3.1 | 2.0 | 1.0 | 0.0 | 1.0 |
E022 | chr19 | 14529251 | 14529253 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.106 | 0.1667 | NA | NA | NA | 2.0 | 2.1 | 2.0 | 0.0 | 0.0 | 1.0 |
E023 | chr19 | 14529253 | 14529300 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.106 | 0.1667 | NA | NA | NA | 2.0 | 2.1 | 2.0 | 0.0 | 0.0 | 1.0 |
E024 | chr19 | 14529300 | 14529308 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E025 | chr19 | 14529308 | 14529310 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E026 | chr19 | 14529310 | 14529322 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.927 | 0.4466 | NA | NA | NA | 3.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
E027 | chr19 | 14529322 | 14529770 | TRUE | OK | 1255.9 | 0.00262 | 5.665e-18 | 5.559e-14 | 0.793 | 0.397 | 1311.4 | 1090.7 | 1213.7 | 1313.5 | 1260.3 | 1345.8 |
J028 | chr19 | 14516170 | 14516465 | TRUE | OK | 1605.6 | 0.00105 | 0.6049 | 0.8896 | -0.034 | -0.017 | 2036.1 | 2017.7 | 1804.9 | 1313.5 | 1202.6 | 1258.8 |
J029 | chr19 | 14517046 | 14517478 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.0902 | 0.4323 | NA | NA | NA | 1.0 | 1.0 | 1.0 | 1.0 | 0.0 | 2.9 |
J030 | chr19 | 14517046 | 14517590 | TRUE | OK | 60.3 | 0.0132 | 0.02532 | 0.527 | 0.548 | 0.274 | 69.0 | 48.0 | 67.5 | 59.6 | 71.5 | 46.4 |
J031 | chr19 | 14517046 | 14518138 | TRUE | OK | 1982.0 | 0.00429 | 0.3347 | 0.8024 | -0.112 | -0.056 | 2682.9 | 2169.9 | 2509.0 | 1606.3 | 1392.5 | 1531.5 |
J032 | chr19 | 14517046 | 14527686 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.5 | 0.0536 | 0.3397 | NA | NA | NA | 4.9 | 8.3 | 2.0 | 3.0 | 2.0 | 1.0 |
J033 | chr19 | 14517046 | 14527725 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.149 | 0.5616 | NA | NA | NA | 2.0 | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 |
J034 | chr19 | 14518268 | 14527725 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.9 | 0.0181 | 0.09714 | NA | NA | NA | 6.9 | 4.2 | 5.0 | 4.0 | 7.8 | 7.7 |
J035 | chr19 | 14527810 | 14529124 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J036 | chr19 | 14527810 | 14529209 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.0801 | 0.631 | NA | NA | NA | 2.0 | 1.0 | 1.0 | 1.0 | 0.0 | 2.9 |
J037 | chr19 | 14527810 | 14529221 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.0714 | 0.1558 | NA | NA | NA | 2.0 | 2.1 | 2.0 | 1.0 | 0.0 | 0.0 |
J038 | chr19 | 14527810 | 14529310 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.925 | 0.4461 | NA | NA | NA | 3.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
N039 | chr19 | 14527852 | 14562524 | TRUE | OK | 19.9 | 0.0064 | 0.3594 | 0.8106 | 0.270 | 0.135 | 27.6 | 17.7 | 21.2 | 17.9 | 16.6 | 18.4 |
N040 | chr19 | 14529711 | 14562524 | TRUE | OK | 1233.8 | 0.00246 | 7.835e-19 | 8.819e-15 | 0.793 | 0.396 | 1290.7 | 1066.7 | 1193.6 | 1290.6 | 1236.8 | 1324.6 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000132002.8 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |