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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
| MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
| E001 | chr12 | 49188735 | 49189225 | TRUE | OK | 757.5 | 0.00925 | 3.381e-18 | 3.497e-14 | 1.465 | 0.733 | 529.5 | 488.0 | 524.8 | 983.9 | 947.9 | 1071.3 |
| E002 | chr12 | 49208545 | 49208831 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E003 | chr12 | 49208831 | 49208901 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E004 | chr12 | 49208901 | 49208949 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.857 | 0.4853 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| E005 | chr12 | 49227925 | 49227926 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.857 | 0.4853 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| E006 | chr12 | 49227926 | 49227929 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.857 | 0.4853 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| E007 | chr12 | 49227929 | 49228042 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.857 | 0.4853 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| E008 | chr12 | 49228042 | 49228090 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E009 | chr12 | 49228090 | 49228166 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.754 | 0.3046 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 |
| E010 | chr12 | 49256396 | 49256489 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.377 | 0.3614 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E011 | chr12 | 49256489 | 49256511 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.372 | 0.7635 | NA | NA | NA | 3.0 | 2.1 | 0.0 | 3.0 | 0.0 | 0.0 |
| E012 | chr12 | 49257883 | 49258001 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.251 | 0.4473 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 | 1.0 |
| E013 | chr12 | 49264906 | 49265080 | TRUE | OK | 20.7 | 0.00986 | 0.004426 | 0.2795 | 0.886 | 0.443 | 18.7 | 16.7 | 18.1 | 27.8 | 25.5 | 17.4 |
| E014 | chr12 | 49265080 | 49265081 | TRUE | OK | 19.4 | 0.00838 | 0.06761 | 0.6589 | 0.567 | 0.283 | 16.8 | 21.9 | 18.1 | 23.8 | 19.6 | 16.4 |
| E015 | chr12 | 49265081 | 49265184 | TRUE | OK | 11516.6 | 0.0167 | 0.08908 | 0.6884 | 0.376 | 0.188 | 13563.5 | 10807.8 | 12219.6 | 11268.2 | 10292.2 | 10948.5 |
| E016 | chr12 | 49269464 | 49269527 | TRUE | OK | 14615.1 | 0.0136 | 0.1281 | 0.7223 | 0.309 | 0.154 | 17135.8 | 14640.8 | 15702.6 | 14043.0 | 12791.4 | 13377.2 |
| E017 | chr12 | 49269527 | 49269687 | TRUE | OK | 24490.8 | 0.015 | 0.3982 | 0.8234 | 0.195 | 0.097 | 29404.8 | 26039.8 | 27067.1 | 23084.3 | 20263.3 | 21085.7 |
| E018 | chr12 | 49269785 | 49269827 | TRUE | OK | 289.5 | 0.0359 | 0.3806 | 0.8172 | -0.222 | -0.111 | 401.3 | 319.1 | 357.6 | 256.1 | 272.2 | 130.5 |
| E019 | chr12 | 49269827 | 49269937 | TRUE | OK | 18978.7 | 0.0108 | 0.8166 | 0.9543 | 0.059 | 0.030 | 23263.9 | 21454.0 | 20931.1 | 17830.5 | 14699.0 | 15693.7 |
| E020 | chr12 | 49269937 | 49269971 | TRUE | OK | 13446.1 | 0.00589 | 0.7617 | 0.9389 | -0.024 | -0.012 | 16253.4 | 16261.2 | 14873.7 | 12399.9 | 10252.1 | 10636.2 |
| E021 | chr12 | 49269971 | 49269976 | TRUE | OK | 10042.6 | 0.00473 | 0.7316 | 0.9299 | -0.027 | -0.014 | 12128.9 | 12294.7 | 11011.0 | 9125.7 | 7640.3 | 8054.7 |
| E022 | chr12 | 49269976 | 49270196 | TRUE | OK | 203.0 | 0.0123 | 0.7318 | 0.93 | 0.087 | 0.044 | 244.5 | 217.9 | 230.7 | 184.7 | 198.8 | 141.2 |
| E023 | chr12 | 49272252 | 49272637 | TRUE | OK | 25451.6 | 0.00288 | 0.8692 | 0.9683 | 0.025 | 0.012 | 29492.5 | 32464.0 | 26809.2 | 23141.9 | 20572.7 | 20229.1 |
| E024 | chr12 | 49272637 | 49273068 | TRUE | OK | 32482.6 | 0.00772 | 0.1449 | 0.7324 | -0.238 | -0.119 | 34573.4 | 50542.7 | 33237.3 | 27664.1 | 24158.8 | 24719.1 |
| E025 | chr12 | 49273068 | 49273156 | TRUE | OK | 18131.9 | 0.0117 | 0.3015 | 0.7919 | -0.229 | -0.115 | 18035.1 | 30455.8 | 18241.8 | 14725.1 | 13330.0 | 14003.7 |
| E026 | chr12 | 49273156 | 49273166 | TRUE | OK | 11281.0 | 0.0105 | 0.355 | 0.809 | -0.201 | -0.100 | 11097.5 | 19072.4 | 11302.0 | 9233.9 | 8194.6 | 8785.6 |
| E027 | chr12 | 49273166 | 49273328 | TRUE | OK | 11744.6 | 0.0114 | 0.3177 | 0.7967 | -0.224 | -0.112 | 11448.5 | 20105.7 | 11838.9 | 9523.8 | 8552.1 | 8998.3 |
| E028 | chr12 | 49273328 | 49273330 | TRUE | OK | 1096.7 | 0.0125 | 0.9359 | 0.9849 | -0.067 | -0.033 | 1003.8 | 1868.6 | 1044.5 | 854.8 | 891.1 | 917.5 |
| E029 | chr12 | 49273330 | 49273334 | TRUE | OK | 974.1 | 0.0129 | 0.865 | 0.9671 | -0.086 | -0.043 | 905.2 | 1676.7 | 915.6 | 750.5 | 792.2 | 804.4 |
| E030 | chr12 | 49273334 | 49274603 | TRUE | OK | 617.8 | 0.00153 | 0.5347 | 0.867 | 0.054 | 0.027 | 710.9 | 797.7 | 623.5 | 571.8 | 494.5 | 508.6 |
| J031 | chr12 | 49189225 | 49208831 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J032 | chr12 | 49208949 | 49228090 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.56 | 0.4439 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| J033 | chr12 | 49228166 | 49256396 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J034 | chr12 | 49228166 | 49257883 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J035 | chr12 | 49228166 | 49269464 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.63 | 0.2737 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 |
| J036 | chr12 | 49256511 | 49257883 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J037 | chr12 | 49256511 | 49269464 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.368 | 0.8895 | NA | NA | NA | 2.0 | 1.0 | 0.0 | 3.0 | 0.0 | 0.0 |
| J038 | chr12 | 49258001 | 49269464 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J039 | chr12 | 49265184 | 49269464 | TRUE | OK | 11483.4 | 0.017 | 0.09277 | 0.6914 | 0.375 | 0.187 | 13518.2 | 10788.0 | 12183.4 | 11231.4 | 10258.9 | 10920.4 |
| J040 | chr12 | 49269687 | 49269827 | TRUE | OK | 14279.6 | 0.0114 | 0.8608 | 0.966 | 0.048 | 0.024 | 17732.4 | 15900.4 | 15840.6 | 13364.9 | 10850.4 | 11988.8 |
| J041 | chr12 | 49269971 | 49272637 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.2 | 0.0287 | 0.6483 | NA | NA | NA | 3.9 | 5.2 | 3.0 | 3.0 | 2.9 | 1.0 |
| J042 | chr12 | 49269976 | 49272252 | TRUE | OK | 9416.1 | 0.00391 | 0.6917 | 0.9173 | -0.030 | -0.015 | 11293.7 | 11636.8 | 10317.0 | 8550.9 | 7162.5 | 7535.5 |
| J043 | chr12 | 49273068 | 49273156 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.2 | 0.0965 | 0.02479 | NA | NA | NA | 8.9 | 7.3 | 5.0 | 0.0 | 0.0 | 3.9 |
| N044 | chr12 | 49186833 | 49188976 | TRUE | OK | 727.6 | 0.00876 | 7.568e-19 | 8.776e-15 | 1.458 | 0.729 | 509.8 | 470.3 | 505.6 | 950.1 | 910.7 | 1019.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000167553.15 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |