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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
E001 | chr5 | 177438502 | 177438870 | TRUE | OK | 14.6 | 0.016 | 0.3649 | 0.7967 | 0.322 | 0.161 | 18.0 | 9.0 | 7.0 | 23.0 | 16.0 | 16.0 |
E002 | chr5 | 177439913 | 177440031 | TRUE | OK | 13.1 | 0.0664 | 0.3086 | 0.7748 | 0.605 | 0.303 | 7.0 | 7.0 | 12.0 | 22.0 | 10.0 | 20.0 |
E003 | chr5 | 177442802 | 177442960 | TRUE | OK | 28.1 | 0.00811 | 0.113 | 0.6516 | -0.448 | -0.224 | 36.0 | 28.0 | 21.0 | 28.0 | 20.0 | 38.0 |
E004 | chr5 | 177443066 | 177443302 | TRUE | OK | 28.9 | 0.00807 | 0.7902 | 0.9449 | -0.093 | -0.047 | 40.0 | 25.0 | 14.0 | 34.0 | 25.0 | 39.0 |
E005 | chr5 | 177443302 | 177443486 | TRUE | OK | 23.6 | 0.00804 | 0.7073 | 0.9196 | -0.126 | -0.063 | 31.0 | 23.0 | 11.0 | 24.0 | 22.0 | 33.0 |
E006 | chr5 | 177443486 | 177443502 | TRUE | OK | 14.7 | 0.0152 | 0.891 | 0.9735 | 0.064 | 0.032 | 13.0 | 13.0 | 11.0 | 11.0 | 17.0 | 23.0 |
E007 | chr5 | 177444395 | 177444477 | TRUE | OK | 21.9 | 0.0374 | 0.9017 | 0.9763 | 0.000 | 0.000 | 25.0 | 27.0 | 6.0 | 25.0 | 19.0 | 32.0 |
E008 | chr5 | 177444477 | 177444580 | TRUE | OK | 24.1 | 0.0102 | 0.8731 | 0.9685 | -0.064 | -0.032 | 30.0 | 25.0 | 10.0 | 21.0 | 27.0 | 34.0 |
E009 | chr5 | 177444580 | 177444594 | TRUE | OK | 15.5 | 0.0287 | 0.7585 | 0.9354 | -0.126 | -0.063 | 23.0 | 12.0 | 8.0 | 11.0 | 13.0 | 28.0 |
E010 | chr5 | 177445978 | 177446344 | TRUE | OK | 40.8 | 0.0521 | 0.6223 | 0.8912 | -0.168 | -0.084 | 54.0 | 33.0 | 26.0 | 23.0 | 60.0 | 51.0 |
E011 | chr5 | 177447643 | 177447698 | TRUE | OK | 43.3 | 0.0185 | 0.2236 | 0.7372 | -0.386 | -0.193 | 60.0 | 30.0 | 37.0 | 51.0 | 41.0 | 44.0 |
E012 | chr5 | 177447698 | 177447699 | TRUE | OK | 39.8 | 0.0249 | 0.4288 | 0.8216 | -0.288 | -0.144 | 56.0 | 25.0 | 33.0 | 50.0 | 37.0 | 41.0 |
J013 | chr5 | 177438870 | 177439913 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.098 | 0.5017 | NA | NA | NA | 2.0 | 0.0 | 2.0 | 2.0 | 0.0 | 1.0 |
J014 | chr5 | 177440031 | 177444395 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.0764 | 0.4673 | NA | NA | NA | 1.0 | 0.0 | 1.0 | 1.0 | 1.0 | 3.0 |
J015 | chr5 | 177442960 | 177443302 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J016 | chr5 | 177443486 | 177444395 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J017 | chr5 | 177443502 | 177444395 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J018 | chr5 | 177444594 | 177447643 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.8 | 0.0651 | 0.04721 | NA | NA | NA | 3.0 | 0.0 | 0.0 | 3.0 | 3.0 | 8.0 |
J019 | chr5 | 177446344 | 177447643 | TRUE | OK | 6.7 | 0.0195 | 0.01689 | 0.3629 | -1.287 | -0.644 | 16.0 | 7.0 | 4.0 | 5.0 | 6.0 | 4.0 |
N020 | chr5 | 177436530 | 177440699 | TRUE | OK | 332.7 | 3.32 | 0.4878 | 0.8431 | -28.179 | -4.586 | 525.0 | 367.0 | 386.0 | 262.0 | 264.0 | 220.0 |
N021 | chr5 | 177440837 | 177440918 | TRUE | OK | 280.6 | 2.37 | 0.04808 | 0.5267 | -28.618 | -5.447 | 438.0 | 325.0 | 312.0 | 179.0 | 266.0 | 185.0 |
N022 | chr5 | 177441053 | 177441734 | TRUE | OK | 77.2 | 0.0303 | 6.543e-08 | 3.416e-05 | -1.823 | -0.910 | 119.0 | 90.0 | 78.0 | 51.0 | 73.0 | 59.0 |
N023 | chr5 | 177441053 | 177441736 | TRUE | OK | 166.3 | 0.0475 | 3.682e-36 | 3.948e-32 | -30.860 | -6.680 | 261.0 | 192.0 | 191.0 | 133.0 | 122.0 | 113.0 |
N024 | chr5 | 177446960 | 177454828 | TRUE | OK | 115.5 | 0.126 | 0.3523 | 0.7921 | -0.443 | -0.221 | 108.0 | 120.0 | 90.0 | 115.0 | 142.0 | 119.0 |
Color Codes | |||||
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NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000246334.2 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |