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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Normalized Coverage Counts | |||||
MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
E001 | chr6 | 33272074 | 33272087 | TRUE | OK | 1605.4 | 0.00186 | 0.04932 | 0.5308 | -0.161 | -0.080 | 1614.7 | 1722.3 | 1626.2 | 1490.3 | 1803.8 | 1374.9 |
E002 | chr6 | 33272087 | 33272095 | TRUE | OK | 9974.9 | 0.00455 | 0.1007 | 0.6361 | -0.201 | -0.101 | 9961.9 | 10700.8 | 10388.2 | 9494.4 | 10553.8 | 8750.5 |
E003 | chr6 | 33272095 | 33272098 | TRUE | OK | 13265.2 | 0.00426 | 0.07802 | 0.5991 | -0.209 | -0.104 | 13260.3 | 14154.2 | 13852.4 | 12468.2 | 14157.3 | 11698.9 |
E004 | chr6 | 33272098 | 33272122 | TRUE | OK | 24550.0 | 0.00448 | 0.03217 | 0.4631 | -0.258 | -0.129 | 24679.0 | 25929.9 | 25926.6 | 22459.7 | 26462.6 | 21842.4 |
E005 | chr6 | 33272131 | 33272586 | TRUE | OK | 303.3 | 0.0129 | 0.01396 | 0.3347 | 0.481 | 0.240 | 280.6 | 233.6 | 223.9 | 308.3 | 377.1 | 396.4 |
E006 | chr6 | 33272586 | 33272627 | TRUE | OK | 494.5 | 0.00495 | 0.001576 | 0.1046 | 0.395 | 0.197 | 371.9 | 444.4 | 433.4 | 503.0 | 626.4 | 588.1 |
E007 | chr6 | 33272627 | 33272726 | TRUE | OK | 44828.1 | 0.00181 | 0.2208 | 0.7356 | -0.097 | -0.048 | 43099.8 | 45718.0 | 44537.9 | 40837.9 | 54040.8 | 40734.4 |
E008 | chr6 | 33275320 | 33275499 | TRUE | OK | 70.3 | 0.0117 | 0.7681 | 0.9386 | 0.047 | 0.023 | 80.2 | 72.3 | 48.8 | 64.2 | 84.8 | 71.6 |
E009 | chr6 | 33275499 | 33275657 | TRUE | OK | 103.9 | 0.00689 | 0.7278 | 0.926 | -0.079 | -0.039 | 115.2 | 106.9 | 89.8 | 96.9 | 111.0 | 103.9 |
E010 | chr6 | 33275657 | 33275796 | TRUE | OK | 722.7 | 0.00413 | 1.016e-42 | 1.541e-38 | 1.617 | 0.808 | 306.2 | 361.3 | 370.3 | 1086.1 | 1227.7 | 984.5 |
E011 | chr6 | 33275796 | 33275865 | TRUE | OK | 60229.4 | 0.00352 | 0.355 | 0.7932 | -0.108 | -0.054 | 57369.1 | 61464.8 | 59409.0 | 55312.3 | 73114.1 | 54707.0 |
E012 | chr6 | 33275865 | 33275883 | TRUE | OK | 50625.0 | 0.00421 | 0.8867 | 0.9725 | 0.014 | 0.007 | 49022.8 | 51249.1 | 47710.6 | 47050.2 | 63046.3 | 45671.0 |
E013 | chr6 | 33275883 | 33275964 | TRUE | OK | 1601.1 | 0.00888 | 2.379e-07 | 0.0001049 | 0.807 | 0.403 | 849.6 | 1292.7 | 1272.6 | 1779.9 | 2520.3 | 1891.3 |
E014 | chr6 | 33275964 | 33276066 | TRUE | OK | 62190.9 | 0.0102 | 0.6132 | 0.8881 | 0.097 | 0.048 | 60200.2 | 62449.7 | 57921.4 | 57866.0 | 78816.8 | 55891.2 |
E015 | chr6 | 33276066 | 33276175 | TRUE | OK | 1425.3 | 0.00538 | 4.062e-10 | 3.697e-07 | 0.775 | 0.387 | 838.5 | 1185.8 | 1056.4 | 1747.3 | 2138.0 | 1585.7 |
E016 | chr6 | 33276175 | 33276267 | TRUE | OK | 39734.7 | 0.00491 | 0.624 | 0.892 | 0.064 | 0.032 | 38800.0 | 39821.8 | 36369.1 | 37303.8 | 51081.5 | 35032.2 |
E017 | chr6 | 33276267 | 33276390 | TRUE | OK | 253.0 | 0.00149 | 3.559e-36 | 3.912e-32 | 1.281 | 0.641 | 131.4 | 154.4 | 143.0 | 314.3 | 440.0 | 334.9 |
E018 | chr6 | 33276390 | 33276505 | TRUE | OK | 26011.0 | 0.00354 | 0.9596 | 0.9911 | 0.017 | 0.008 | 25694.9 | 25918.0 | 24249.4 | 23763.3 | 34007.9 | 22432.5 |
E019 | chr6 | 33276505 | 33276510 | TRUE | OK | 189.1 | 0.00609 | 0.6289 | 0.8938 | -0.076 | -0.038 | 211.5 | 165.3 | 190.7 | 167.0 | 238.8 | 161.4 |
E020 | chr6 | 33276510 | 33276511 | TRUE | OK | 6.2 | 0.0254 | 0.7759 | 0.9408 | -0.156 | -0.078 | 6.8 | 8.9 | 3.3 | 6.9 | 8.4 | 3.0 |
J021 | chr6 | 33272122 | 33272586 | TRUE | OK | 89.7 | 0.00208 | 0.5418 | 0.8629 | 0.087 | 0.044 | 75.9 | 84.1 | 95.3 | 88.0 | 112.1 | 82.7 |
J022 | chr6 | 33272122 | 33272627 | TRUE | OK | 24428.2 | 0.00429 | 0.02791 | 0.4404 | -0.259 | -0.130 | 24568.1 | 25816.1 | 25799.1 | 22342.1 | 26326.4 | 21717.4 |
J023 | chr6 | 33272726 | 33275499 | TRUE | OK | 16.8 | 0.00763 | 0.6494 | 0.9006 | -0.152 | -0.076 | 13.6 | 23.8 | 14.4 | 14.8 | 19.9 | 14.1 |
J024 | chr6 | 33272726 | 33275796 | TRUE | OK | 43926.8 | 0.00165 | 0.1981 | 0.7223 | -0.096 | -0.048 | 42410.6 | 44762.9 | 43530.3 | 40032.4 | 53014.2 | 39810.5 |
J025 | chr6 | 33275657 | 33275796 | TRUE | OK | 20.2 | 0.00663 | 0.3136 | 0.7767 | -0.291 | -0.145 | 21.3 | 24.7 | 18.8 | 11.9 | 28.3 | 16.1 |
J026 | chr6 | 33275883 | 33275964 | TRUE | OK | 45105.7 | 0.00513 | 0.8558 | 0.9636 | 0.020 | 0.010 | 44331.5 | 45517.1 | 41826.4 | 42237.3 | 56079.2 | 40642.6 |
J027 | chr6 | 33276066 | 33276175 | TRUE | OK | 34749.7 | 0.00478 | 0.9437 | 0.9872 | 0.009 | 0.005 | 34603.3 | 35131.1 | 31836.2 | 32636.1 | 43638.8 | 30652.4 |
J028 | chr6 | 33276267 | 33276390 | TRUE | OK | 25832.4 | 0.00337 | 0.8827 | 0.9714 | -0.002 | -0.001 | 25641.2 | 25859.6 | 24187.3 | 23421.3 | 33697.8 | 22187.4 |
N029 | chr6 | 33275883 | 33275940 | TRUE | OK | 11.5 | 0.0103 | 0.3256 | 0.7818 | -0.389 | -0.195 | 10.2 | 14.8 | 13.3 | 12.8 | 9.4 | 8.1 |
N030 | chr6 | 33275883 | 33275991 | TRUE | OK | 22.8 | 0.015 | 0.5015 | 0.8483 | -0.230 | -0.115 | 19.6 | 18.8 | 34.4 | 20.8 | 23.0 | 20.2 |
N031 | chr6 | 33276066 | 33276390 | TRUE | OK | 20.3 | 0.00759 | 0.5918 | 0.8806 | 0.155 | 0.078 | 12.8 | 22.8 | 21.1 | 23.7 | 24.1 | 17.1 |
Color Codes | |||||
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NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000231500.7 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |