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Normalized Counts Table (ENSG00000163931.16)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr3	53224711	53224713	TRUE	OK	13.3	0.0115	0.3732	0.7999	0.331	0.166	12.8	10.9	11.1	14.8	18.9	11.1
E002	chr3	53224713	53225609	TRUE	OK	440.3	0.00126	0.05551	0.5485	0.157	0.079	422.2	408.8	407.9	471.4	494.4	436.8
E003	chr3	53225609	53225651	TRUE	OK	6.5	0.0435	0.7212	0.9242	0.192	0.096	9.4	3.0	5.5	9.9	4.2	7.1
E004	chr3	53225651	53225656	TRUE	OK	4.6	0.0334	0.5372	0.8612	-0.380	-0.190	5.1	4.0	6.7	5.9	1.0	5.0
E005	chr3	53225656	53225658	TRUE	OK	5.8	0.0211	0.4879	0.8431	-0.378	-0.189	6.0	5.9	7.8	5.9	4.2	5.0
E006	chr3	53225658	53225701	TRUE	OK	154.7	0.0161	0.3164	0.7778	0.252	0.126	136.5	159.4	124.2	184.8	203.2	120.0
E007	chr3	53225701	53225750	TRUE	OK	491.3	0.02	0.2501	0.7496	0.298	0.149	466.6	492.9	352.5	500.1	712.3	423.7
E008	chr3	53225750	53225931	TRUE	OK	9099.3	0.0145	0.2142	0.7321	0.276	0.138	8464.9	8517.3	7900.6	8625.7	12610.1	8477.1
E009	chr3	53225931	53226755	TRUE	OK	345.2	0.00617	6.046e-07	0.0002358	0.739	0.369	255.9	273.2	240.6	413.1	513.3	375.2
E010	chr3	53226755	53226878	TRUE	OK	13471.2	0.0151	0.2983	0.7708	0.237	0.118	12641.0	12504.2	12386.9	12525.5	18208.1	12561.4
E011	chr3	53226878	53228055	TRUE	OK	356.1	0.00195	1.136e-07	5.573e-05	0.514	0.257	305.4	296.0	270.5	397.3	436.8	430.7
E012	chr3	53228055	53228149	TRUE	OK	11709.4	0.00856	0.5697	0.8732	0.102	0.051	11497.2	11060.1	11312.7	11126.1	14544.9	10715.4
E013	chr3	53228275	53228359	TRUE	OK	10503.8	0.0049	0.895	0.9746	-0.008	-0.004	10564.0	10170.2	10616.5	9983.6	12145.0	9543.3
E014	chr3	53228680	53229006	TRUE	OK	96.0	0.00604	0.4574	0.8319	-0.128	-0.064	97.2	107.9	93.1	74.1	106.8	96.8
E015	chr3	53229006	53229137	TRUE	OK	10531.6	0.0019	0.1526	0.6906	-0.104	-0.052	11168.8	10424.6	10711.9	10494.6	10855.5	9534.3
E016	chr3	53229279	53229436	TRUE	OK	10511.2	0.00245	0.3596	0.795	-0.078	-0.039	11374.4	10059.4	10572.2	10812.8	10227.0	10021.5
E017	chr3	53229436	53229437	TRUE	OK	112.8	0.0033	6.609e-18	2.004e-14	1.315	0.658	54.6	74.2	64.3	171.0	156.1	156.3
E018	chr3	53230456	53230621	TRUE	OK	12779.9	0.00216	0.9268	0.9828	-0.008	-0.004	13285.0	12062.7	12793.7	13436.7	12486.5	12614.8
E019	chr3	53231349	53231356	TRUE	OK	50.9	0.0102	0.8064	0.9493	-0.057	-0.029	55.4	56.4	42.1	39.5	51.3	60.5
E020	chr3	53231356	53231453	TRUE	OK	10599.4	0.00246	0.6314	0.8947	0.040	0.020	10940.2	9966.3	10296.1	11332.7	10377.8	10683.2
E021	chr3	53231453	53231459	TRUE	OK	7715.7	0.00218	0.4681	0.8362	0.057	0.028	7925.8	7202.8	7449.4	8247.2	7604.0	7864.9
E022	chr3	53231459	53231550	TRUE	OK	10297.5	0.00291	0.8589	0.9646	0.017	0.008	10641.7	9788.2	10088.9	11062.9	9852.0	10351.3
E023	chr3	53231550	53232299	TRUE	OK	475.8	0.00286	0.5218	0.8559	0.066	0.033	480.2	473.1	430.1	492.2	460.9	518.5
E024	chr3	53232299	53232759	TRUE	OK	327.8	0.00644	0.6232	0.8916	-0.081	-0.040	379.6	338.5	283.8	319.2	306.9	338.9
E025	chr3	53232759	53233155	TRUE	OK	419.2	0.00242	0.176	0.7076	-0.135	-0.068	450.4	407.8	449.0	394.3	378.2	435.8
E026	chr3	53233155	53233274	TRUE	OK	10088.5	0.00586	0.4318	0.8227	-0.096	-0.048	10594.8	10122.7	10170.9	10848.4	8745.8	10048.7
E027	chr3	53233274	53234851	TRUE	OK	387.8	0.012	0.1917	0.7183	0.255	0.127	376.2	379.1	297.1	417.1	358.3	499.3
E028	chr3	53234851	53234982	TRUE	OK	50.8	0.0321	0.7922	0.9454	0.119	0.060	48.6	58.4	37.7	45.5	37.7	76.7
E029	chr3	53234982	53235019	TRUE	OK	7656.8	0.00956	0.2133	0.7315	-0.192	-0.096	8132.2	8082.7	7928.3	8309.5	6029.6	7458.3
E030	chr3	53235019	53235064	TRUE	OK	7875.0	0.0142	0.1358	0.6753	-0.278	-0.139	8621.8	8301.5	8514.7	8606.0	5669.2	7537.0
E031	chr3	53235064	53235116	TRUE	OK	7039.9	0.0138	0.1725	0.7053	-0.250	-0.125	7885.7	7285.0	7413.9	7771.9	5155.9	6727.0
E032	chr3	53235116	53235148	TRUE	OK	6879.3	0.0088	0.4935	0.8451	-0.098	-0.049	7358.6	6858.3	6894.0	7656.2	5657.7	6851.1
E033	chr3	53235148	53235160	TRUE	OK	6354.4	0.00604	0.7172	0.9228	-0.042	-0.021	6638.7	6158.6	6374.1	7007.9	5525.7	6421.4
E034	chr3	53235160	53235174	TRUE	OK	6501.5	0.00602	0.8713	0.9681	-0.016	-0.008	6765.8	6261.5	6430.7	7209.5	5710.1	6631.2
E035	chr3	53235174	53235607	TRUE	OK	292.4	0.00972	0.672	0.9084	0.075	0.037	318.2	286.1	242.8	300.4	260.8	346.0
E036	chr3	53237796	53237820	TRUE	OK	310.9	0.00878	0.4741	0.8381	-0.113	-0.056	331.8	296.0	334.8	329.1	239.9	333.9
E037	chr3	53237820	53237921	TRUE	OK	343.1	0.00555	0.3406	0.7873	-0.127	-0.064	365.9	344.5	357.0	363.7	277.6	350.0
E038	chr3	53240250	53240289	TRUE	OK	9193.2	0.00395	0.8871	0.9726	-0.013	-0.007	9317.0	8704.3	9467.0	9764.2	8387.5	9519.1
E039	chr3	53240289	53240348	TRUE	OK	9283.3	0.00309	0.8991	0.9756	0.012	0.006	9363.1	8671.7	9513.5	9776.1	8711.2	9664.4
E040	chr3	53241131	53241149	TRUE	OK	8343.9	0.00227	0.7165	0.9226	0.029	0.014	8331.8	7732.3	8571.3	8700.9	8029.3	8698.0
E041	chr3	53241149	53241245	TRUE	OK	9757.4	0.00457	0.9744	0.9945	-0.002	-0.001	10193.0	9125.0	9761.8	10483.7	8935.4	10045.7
E042	chr3	53241894	53242124	TRUE	OK	69.2	0.019	0.5076	0.8506	-0.151	-0.076	64.8	76.2	76.5	90.9	48.2	58.5
E043	chr3	53242124	53242199	TRUE	OK	8749.7	0.00965	0.3852	0.8043	-0.135	-0.068	9560.1	8400.5	9152.1	9506.3	7086.5	8792.9
E044	chr3	53242199	53242242	TRUE	OK	6958.4	0.017	0.1844	0.7137	-0.268	-0.134	7998.3	7000.9	7442.8	7658.2	4869.9	6780.5
E045	chr3	53243582	53243622	TRUE	OK	12.9	0.0171	0.2223	0.7364	0.488	0.244	11.9	8.9	11.1	13.8	10.5	21.2
E046	chr3	53255835	53255974	TRUE	OK	7172.5	0.0168	0.1988	0.7227	-0.258	-0.129	8154.4	7140.4	7766.5	7845.0	5034.4	7094.2
E047	chr3	53255974	53255987	TRUE	OK	3384.2	0.0153	0.2023	0.7246	-0.246	-0.123	3911.7	3299.0	3684.8	3663.6	2380.0	3366.0
E048	chr3	53255987	53256000	TRUE	OK	3144.5	0.0151	0.1979	0.7221	-0.247	-0.123	3615.7	3054.5	3459.8	3391.8	2212.4	3133.0
E049	chr3	53256000	53256013	TRUE	OK	2577.3	0.0152	0.1791	0.7097	-0.261	-0.130	2983.7	2485.4	2874.5	2756.3	1798.6	2565.1
E050	chr3	53256013	53256022	TRUE	OK	716.2	0.0135	0.2449	0.7473	-0.214	-0.107	806.1	691.9	792.6	782.7	508.0	716.2
E051	chr3	53256022	53256052	TRUE	OK	56.3	0.00637	0.006632	0.2347	-0.557	-0.279	61.4	67.3	72.1	55.3	34.6	47.4
J052	chr3	53225609	53225750	TRUE	OK	109.9	0.00435	0.3862	0.8046	0.137	0.069	110.0	107.9	93.1	133.4	103.7	111.0
J053	chr3	53225931	53226755	TRUE	OK	7754.8	0.0133	0.2735	0.7597	0.235	0.117	7322.8	7268.1	6850.8	7258.9	10576.9	7251.6
J054	chr3	53226878	53228055	TRUE	OK	8958.2	0.0101	0.4292	0.8217	0.151	0.075	8738.7	8331.2	8410.5	8441.9	11568.9	8258.2
J055	chr3	53226878	53228275	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.531	0.547	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
J056	chr3	53228149	53228275	TRUE	OK	7687.0	0.00744	0.8775	0.9698	0.036	0.018	7586.3	7337.4	7716.6	7160.1	9405.7	6915.7
J057	chr3	53228359	53229006	TRUE	OK	6786.4	0.00132	0.01529	0.3479	-0.149	-0.075	7112.1	6893.0	7141.2	6603.7	6960.8	6007.8
J058	chr3	53229137	53229279	TRUE	OK	5536.0	0.00223	0.1174	0.6572	-0.126	-0.063	6127.7	5448.9	5570.4	5613.5	5402.1	5053.6
J059	chr3	53229436	53230456	TRUE	OK	6049.3	0.00211	0.6296	0.8941	-0.040	-0.020	6518.4	5663.7	6057.1	6241.0	5905.9	5910.0
J060	chr3	53230621	53231349	FALSE	LOW_COUNTS_INDEP_FILTER	0.6	0.455	0.972	NA	NA	NA	1.7	0.0	0.0	2.0	0.0	0.0
J061	chr3	53230621	53231356	TRUE	OK	7454.7	0.00199	0.6803	0.9111	-0.031	-0.015	7802.1	7129.6	7480.4	7887.5	7164.0	7264.7
J062	chr3	53231550	53233155	TRUE	OK	6509.1	0.00295	0.7787	0.9416	0.027	0.013	6762.4	6234.8	6226.7	7057.3	6215.0	6558.6
J063	chr3	53233274	53234982	TRUE	OK	6096.3	0.00746	0.1559	0.6932	-0.197	-0.098	6415.2	6401.1	6461.7	6491.0	4885.7	5923.1
J064	chr3	53235064	53240250	TRUE	OK	46.3	0.00355	0.02484	0.4221	-0.448	-0.224	53.7	53.4	52.1	41.5	31.4	45.4
J065	chr3	53235116	53235148	TRUE	OK	3.3	0.0677	0.6306	0.8944	0.341	0.170	5.1	0.0	3.3	3.0	5.2	3.0
J066	chr3	53235174	53237796	TRUE	OK	208.8	0.00898	0.7106	0.9206	-0.057	-0.028	212.4	195.0	227.3	216.4	163.4	238.1
J067	chr3	53235174	53240250	TRUE	OK	5722.3	0.00494	0.8184	0.953	-0.023	-0.012	5975.9	5511.2	5679.1	6296.4	5097.3	5773.8
J068	chr3	53237820	53240250	TRUE	OK	21.8	0.00712	0.1764	0.7079	0.392	0.196	18.8	22.8	14.4	30.6	22.0	22.2
J069	chr3	53237921	53240250	TRUE	OK	62.4	0.013	0.8795	0.9704	0.052	0.026	59.7	65.3	57.6	85.0	52.4	54.5
J070	chr3	53240289	53241149	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J071	chr3	53240348	53241131	TRUE	OK	7871.0	0.00201	0.8314	0.9567	0.016	0.008	7861.0	7339.4	8130.1	8149.4	7545.3	8200.8
J072	chr3	53241245	53242124	TRUE	OK	5763.7	0.00556	0.9819	0.9963	0.005	0.002	6160.2	5302.4	5678.0	6333.9	5198.9	5909.0
J073	chr3	53242242	53243582	TRUE	OK	8.0	0.111	0.5558	0.8679	0.512	0.256	6.8	4.0	8.9	10.9	2.1	15.1
J074	chr3	53242242	53255835	TRUE	OK	5989.0	0.0172	0.1584	0.6952	-0.289	-0.144	6969.6	6042.8	6444.0	6496.0	4156.6	5825.3
J075	chr3	53243622	53255835	TRUE	OK	10.2	0.0636	0.4327	0.8229	0.509	0.254	9.4	7.9	7.8	12.8	4.2	19.2
N076	chr3	53231550	53232738	TRUE	OK	54.0	0.00658	0.954	0.9898	-0.013	-0.006	44.4	48.5	69.8	56.3	55.5	49.4
N077	chr3	53235064	53237796	TRUE	OK	17.1	0.00797	0.4561	0.8314	-0.238	-0.119	19.6	19.8	15.5	18.8	10.5	18.2

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000163931.16
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE