| << | < Prev Gene | TOP | Next Gene > | >> | |
| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr3 | 53224711 | 53224713 | TRUE | OK | 13.3 | 0.0115 | 0.3732 | 0.7999 | 0.331 | 0.166 | 15.0 | 11.0 | 10.0 | 15.0 | 18.0 | 11.0 |
| E002 | chr3 | 53224713 | 53225609 | TRUE | OK | 440.3 | 0.00126 | 0.05551 | 0.5485 | 0.157 | 0.079 | 495.0 | 413.0 | 368.0 | 477.0 | 472.0 | 433.0 |
| E003 | chr3 | 53225609 | 53225651 | TRUE | OK | 6.5 | 0.0435 | 0.7212 | 0.9242 | 0.192 | 0.096 | 11.0 | 3.0 | 5.0 | 10.0 | 4.0 | 7.0 |
| E004 | chr3 | 53225651 | 53225656 | TRUE | OK | 4.6 | 0.0334 | 0.5372 | 0.8612 | -0.380 | -0.190 | 6.0 | 4.0 | 6.0 | 6.0 | 1.0 | 5.0 |
| E005 | chr3 | 53225656 | 53225658 | TRUE | OK | 5.8 | 0.0211 | 0.4879 | 0.8431 | -0.378 | -0.189 | 7.0 | 6.0 | 7.0 | 6.0 | 4.0 | 5.0 |
| E006 | chr3 | 53225658 | 53225701 | TRUE | OK | 154.7 | 0.0161 | 0.3164 | 0.7778 | 0.252 | 0.126 | 160.0 | 161.0 | 112.0 | 187.0 | 194.0 | 119.0 |
| E007 | chr3 | 53225701 | 53225750 | TRUE | OK | 491.3 | 0.02 | 0.2501 | 0.7496 | 0.298 | 0.149 | 547.0 | 498.0 | 318.0 | 506.0 | 680.0 | 420.0 |
| E008 | chr3 | 53225750 | 53225931 | TRUE | OK | 9099.3 | 0.0145 | 0.2142 | 0.7321 | 0.276 | 0.138 | 9924.0 | 8605.0 | 7127.0 | 8728.0 | 12038.0 | 8404.0 |
| E009 | chr3 | 53225931 | 53226755 | TRUE | OK | 345.2 | 0.00617 | 6.046e-07 | 0.0002358 | 0.739 | 0.369 | 300.0 | 276.0 | 217.0 | 418.0 | 490.0 | 372.0 |
| E010 | chr3 | 53226755 | 53226878 | TRUE | OK | 13471.2 | 0.0151 | 0.2983 | 0.7708 | 0.237 | 0.118 | 14820.0 | 12633.0 | 11174.0 | 12674.0 | 17382.0 | 12453.0 |
| E011 | chr3 | 53226878 | 53228055 | TRUE | OK | 356.1 | 0.00195 | 1.136e-07 | 5.573e-05 | 0.514 | 0.257 | 358.0 | 299.0 | 244.0 | 402.0 | 417.0 | 427.0 |
| E012 | chr3 | 53228055 | 53228149 | TRUE | OK | 11709.4 | 0.00856 | 0.5697 | 0.8732 | 0.102 | 0.051 | 13479.0 | 11174.0 | 10205.0 | 11258.0 | 13885.0 | 10623.0 |
| E013 | chr3 | 53228275 | 53228359 | TRUE | OK | 10503.8 | 0.0049 | 0.895 | 0.9746 | -0.008 | -0.004 | 12385.0 | 10275.0 | 9577.0 | 10102.0 | 11594.0 | 9461.0 |
| E014 | chr3 | 53228680 | 53229006 | TRUE | OK | 96.0 | 0.00604 | 0.4574 | 0.8319 | -0.128 | -0.064 | 114.0 | 109.0 | 84.0 | 75.0 | 102.0 | 96.0 |
| E015 | chr3 | 53229006 | 53229137 | TRUE | OK | 10531.6 | 0.0019 | 0.1526 | 0.6906 | -0.104 | -0.052 | 13094.0 | 10532.0 | 9663.0 | 10619.0 | 10363.0 | 9452.0 |
| E016 | chr3 | 53229279 | 53229436 | TRUE | OK | 10511.2 | 0.00245 | 0.3596 | 0.795 | -0.078 | -0.039 | 13335.0 | 10163.0 | 9537.0 | 10941.0 | 9763.0 | 9935.0 |
| E017 | chr3 | 53229436 | 53229437 | TRUE | OK | 112.8 | 0.0033 | 6.609e-18 | 2.004e-14 | 1.315 | 0.658 | 64.0 | 75.0 | 58.0 | 173.0 | 149.0 | 155.0 |
| E018 | chr3 | 53230456 | 53230621 | TRUE | OK | 12779.9 | 0.00216 | 0.9268 | 0.9828 | -0.008 | -0.004 | 15575.0 | 12187.0 | 11541.0 | 13596.0 | 11920.0 | 12506.0 |
| E019 | chr3 | 53231349 | 53231356 | TRUE | OK | 50.9 | 0.0102 | 0.8064 | 0.9493 | -0.057 | -0.029 | 65.0 | 57.0 | 38.0 | 40.0 | 49.0 | 60.0 |
| E020 | chr3 | 53231356 | 53231453 | TRUE | OK | 10599.4 | 0.00246 | 0.6314 | 0.8947 | 0.040 | 0.020 | 12826.0 | 10069.0 | 9288.0 | 11467.0 | 9907.0 | 10591.0 |
| E021 | chr3 | 53231453 | 53231459 | TRUE | OK | 7715.7 | 0.00218 | 0.4681 | 0.8362 | 0.057 | 0.028 | 9292.0 | 7277.0 | 6720.0 | 8345.0 | 7259.0 | 7797.0 |
| E022 | chr3 | 53231459 | 53231550 | TRUE | OK | 10297.5 | 0.00291 | 0.8589 | 0.9646 | 0.017 | 0.008 | 12476.0 | 9889.0 | 9101.0 | 11194.0 | 9405.0 | 10262.0 |
| E023 | chr3 | 53231550 | 53232299 | TRUE | OK | 475.8 | 0.00286 | 0.5218 | 0.8559 | 0.066 | 0.033 | 563.0 | 478.0 | 388.0 | 498.0 | 440.0 | 514.0 |
| E024 | chr3 | 53232299 | 53232759 | TRUE | OK | 327.8 | 0.00644 | 0.6232 | 0.8916 | -0.081 | -0.040 | 445.0 | 342.0 | 256.0 | 323.0 | 293.0 | 336.0 |
| E025 | chr3 | 53232759 | 53233155 | TRUE | OK | 419.2 | 0.00242 | 0.176 | 0.7076 | -0.135 | -0.068 | 528.0 | 412.0 | 405.0 | 399.0 | 361.0 | 432.0 |
| E026 | chr3 | 53233155 | 53233274 | TRUE | OK | 10088.5 | 0.00586 | 0.4318 | 0.8227 | -0.096 | -0.048 | 12421.0 | 10227.0 | 9175.0 | 10977.0 | 8349.0 | 9962.0 |
| E027 | chr3 | 53233274 | 53234851 | TRUE | OK | 387.8 | 0.012 | 0.1917 | 0.7183 | 0.255 | 0.127 | 441.0 | 383.0 | 268.0 | 422.0 | 342.0 | 495.0 |
| E028 | chr3 | 53234851 | 53234982 | TRUE | OK | 50.8 | 0.0321 | 0.7922 | 0.9454 | 0.119 | 0.060 | 57.0 | 59.0 | 34.0 | 46.0 | 36.0 | 76.0 |
| E029 | chr3 | 53234982 | 53235019 | TRUE | OK | 7656.8 | 0.00956 | 0.2133 | 0.7315 | -0.192 | -0.096 | 9534.0 | 8166.0 | 7152.0 | 8408.0 | 5756.0 | 7394.0 |
| E030 | chr3 | 53235019 | 53235064 | TRUE | OK | 7875.0 | 0.0142 | 0.1358 | 0.6753 | -0.278 | -0.139 | 10108.0 | 8387.0 | 7681.0 | 8708.0 | 5412.0 | 7472.0 |
| E031 | chr3 | 53235064 | 53235116 | TRUE | OK | 7039.9 | 0.0138 | 0.1725 | 0.7053 | -0.250 | -0.125 | 9245.0 | 7360.0 | 6688.0 | 7864.0 | 4922.0 | 6669.0 |
| E032 | chr3 | 53235116 | 53235148 | TRUE | OK | 6879.3 | 0.0088 | 0.4935 | 0.8451 | -0.098 | -0.049 | 8627.0 | 6929.0 | 6219.0 | 7747.0 | 5401.0 | 6792.0 |
| E033 | chr3 | 53235148 | 53235160 | TRUE | OK | 6354.4 | 0.00604 | 0.7172 | 0.9228 | -0.042 | -0.021 | 7783.0 | 6222.0 | 5750.0 | 7091.0 | 5275.0 | 6366.0 |
| E034 | chr3 | 53235160 | 53235174 | TRUE | OK | 6501.5 | 0.00602 | 0.8713 | 0.9681 | -0.016 | -0.008 | 7932.0 | 6326.0 | 5801.0 | 7295.0 | 5451.0 | 6574.0 |
| E035 | chr3 | 53235174 | 53235607 | TRUE | OK | 292.4 | 0.00972 | 0.672 | 0.9084 | 0.075 | 0.037 | 373.0 | 289.0 | 219.0 | 304.0 | 249.0 | 343.0 |
| E036 | chr3 | 53237796 | 53237820 | TRUE | OK | 310.9 | 0.00878 | 0.4741 | 0.8381 | -0.113 | -0.056 | 389.0 | 299.0 | 302.0 | 333.0 | 229.0 | 331.0 |
| E037 | chr3 | 53237820 | 53237921 | TRUE | OK | 343.1 | 0.00555 | 0.3406 | 0.7873 | -0.127 | -0.064 | 429.0 | 348.0 | 322.0 | 368.0 | 265.0 | 347.0 |
| E038 | chr3 | 53240250 | 53240289 | TRUE | OK | 9193.2 | 0.00395 | 0.8871 | 0.9726 | -0.013 | -0.007 | 10923.0 | 8794.0 | 8540.0 | 9880.0 | 8007.0 | 9437.0 |
| E039 | chr3 | 53240289 | 53240348 | TRUE | OK | 9283.3 | 0.00309 | 0.8991 | 0.9756 | 0.012 | 0.006 | 10977.0 | 8761.0 | 8582.0 | 9892.0 | 8316.0 | 9581.0 |
| E040 | chr3 | 53241131 | 53241149 | TRUE | OK | 8343.9 | 0.00227 | 0.7165 | 0.9226 | 0.029 | 0.014 | 9768.0 | 7812.0 | 7732.0 | 8804.0 | 7665.0 | 8623.0 |
| E041 | chr3 | 53241149 | 53241245 | TRUE | OK | 9757.4 | 0.00457 | 0.9744 | 0.9945 | -0.002 | -0.001 | 11950.0 | 9219.0 | 8806.0 | 10608.0 | 8530.0 | 9959.0 |
| E042 | chr3 | 53241894 | 53242124 | TRUE | OK | 69.2 | 0.019 | 0.5076 | 0.8506 | -0.151 | -0.076 | 76.0 | 77.0 | 69.0 | 92.0 | 46.0 | 58.0 |
| E043 | chr3 | 53242124 | 53242199 | TRUE | OK | 8749.7 | 0.00965 | 0.3852 | 0.8043 | -0.135 | -0.068 | 11208.0 | 8487.0 | 8256.0 | 9619.0 | 6765.0 | 8717.0 |
| E044 | chr3 | 53242199 | 53242242 | TRUE | OK | 6958.4 | 0.017 | 0.1844 | 0.7137 | -0.268 | -0.134 | 9377.0 | 7073.0 | 6714.0 | 7749.0 | 4649.0 | 6722.0 |
| E045 | chr3 | 53243582 | 53243622 | TRUE | OK | 12.9 | 0.0171 | 0.2223 | 0.7364 | 0.488 | 0.244 | 14.0 | 9.0 | 10.0 | 14.0 | 10.0 | 21.0 |
| E046 | chr3 | 53255835 | 53255974 | TRUE | OK | 7172.5 | 0.0168 | 0.1988 | 0.7227 | -0.258 | -0.129 | 9560.0 | 7214.0 | 7006.0 | 7938.0 | 4806.0 | 7033.0 |
| E047 | chr3 | 53255974 | 53255987 | TRUE | OK | 3384.2 | 0.0153 | 0.2023 | 0.7246 | -0.246 | -0.123 | 4586.0 | 3333.0 | 3324.0 | 3707.0 | 2272.0 | 3337.0 |
| E048 | chr3 | 53255987 | 53256000 | TRUE | OK | 3144.5 | 0.0151 | 0.1979 | 0.7221 | -0.247 | -0.123 | 4239.0 | 3086.0 | 3121.0 | 3432.0 | 2112.0 | 3106.0 |
| E049 | chr3 | 53256000 | 53256013 | TRUE | OK | 2577.3 | 0.0152 | 0.1791 | 0.7097 | -0.261 | -0.130 | 3498.0 | 2511.0 | 2593.0 | 2789.0 | 1717.0 | 2543.0 |
| E050 | chr3 | 53256013 | 53256022 | TRUE | OK | 716.2 | 0.0135 | 0.2449 | 0.7473 | -0.214 | -0.107 | 945.0 | 699.0 | 715.0 | 792.0 | 485.0 | 710.0 |
| E051 | chr3 | 53256022 | 53256052 | TRUE | OK | 56.3 | 0.00637 | 0.006632 | 0.2347 | -0.557 | -0.279 | 72.0 | 68.0 | 65.0 | 56.0 | 33.0 | 47.0 |
| J052 | chr3 | 53225609 | 53225750 | TRUE | OK | 109.9 | 0.00435 | 0.3862 | 0.8046 | 0.137 | 0.069 | 129.0 | 109.0 | 84.0 | 135.0 | 99.0 | 110.0 |
| J053 | chr3 | 53225931 | 53226755 | TRUE | OK | 7754.8 | 0.0133 | 0.2735 | 0.7597 | 0.235 | 0.117 | 8585.0 | 7343.0 | 6180.0 | 7345.0 | 10097.0 | 7189.0 |
| J054 | chr3 | 53226878 | 53228055 | TRUE | OK | 8958.2 | 0.0101 | 0.4292 | 0.8217 | 0.151 | 0.075 | 10245.0 | 8417.0 | 7587.0 | 8542.0 | 11044.0 | 8187.0 |
| J055 | chr3 | 53226878 | 53228275 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.531 | 0.547 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| J056 | chr3 | 53228149 | 53228275 | TRUE | OK | 7687.0 | 0.00744 | 0.8775 | 0.9698 | 0.036 | 0.018 | 8894.0 | 7413.0 | 6961.0 | 7245.0 | 8979.0 | 6856.0 |
| J057 | chr3 | 53228359 | 53229006 | TRUE | OK | 6786.4 | 0.00132 | 0.01529 | 0.3479 | -0.149 | -0.075 | 8338.0 | 6964.0 | 6442.0 | 6682.0 | 6645.0 | 5956.0 |
| J058 | chr3 | 53229137 | 53229279 | TRUE | OK | 5536.0 | 0.00223 | 0.1174 | 0.6572 | -0.126 | -0.063 | 7184.0 | 5505.0 | 5025.0 | 5680.0 | 5157.0 | 5010.0 |
| J059 | chr3 | 53229436 | 53230456 | TRUE | OK | 6049.3 | 0.00211 | 0.6296 | 0.8941 | -0.040 | -0.020 | 7642.0 | 5722.0 | 5464.0 | 6315.0 | 5638.0 | 5859.0 |
| J060 | chr3 | 53230621 | 53231349 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.6 | 0.455 | 0.972 | NA | NA | NA | 2.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 |
| J061 | chr3 | 53230621 | 53231356 | TRUE | OK | 7454.7 | 0.00199 | 0.6803 | 0.9111 | -0.031 | -0.015 | 9147.0 | 7203.0 | 6748.0 | 7981.0 | 6839.0 | 7202.0 |
| J062 | chr3 | 53231550 | 53233155 | TRUE | OK | 6509.1 | 0.00295 | 0.7787 | 0.9416 | 0.027 | 0.013 | 7928.0 | 6299.0 | 5617.0 | 7141.0 | 5933.0 | 6502.0 |
| J063 | chr3 | 53233274 | 53234982 | TRUE | OK | 6096.3 | 0.00746 | 0.1559 | 0.6932 | -0.197 | -0.098 | 7521.0 | 6467.0 | 5829.0 | 6568.0 | 4664.0 | 5872.0 |
| J064 | chr3 | 53235064 | 53240250 | TRUE | OK | 46.3 | 0.00355 | 0.02484 | 0.4221 | -0.448 | -0.224 | 63.0 | 54.0 | 47.0 | 42.0 | 30.0 | 45.0 |
| J065 | chr3 | 53235116 | 53235148 | TRUE | OK | 3.3 | 0.0677 | 0.6306 | 0.8944 | 0.341 | 0.170 | 6.0 | 0.0 | 3.0 | 3.0 | 5.0 | 3.0 |
| J066 | chr3 | 53235174 | 53237796 | TRUE | OK | 208.8 | 0.00898 | 0.7106 | 0.9206 | -0.057 | -0.028 | 249.0 | 197.0 | 205.0 | 219.0 | 156.0 | 236.0 |
| J067 | chr3 | 53235174 | 53240250 | TRUE | OK | 5722.3 | 0.00494 | 0.8184 | 0.953 | -0.023 | -0.012 | 7006.0 | 5568.0 | 5123.0 | 6371.0 | 4866.0 | 5724.0 |
| J068 | chr3 | 53237820 | 53240250 | TRUE | OK | 21.8 | 0.00712 | 0.1764 | 0.7079 | 0.392 | 0.196 | 22.0 | 23.0 | 13.0 | 31.0 | 21.0 | 22.0 |
| J069 | chr3 | 53237921 | 53240250 | TRUE | OK | 62.4 | 0.013 | 0.8795 | 0.9704 | 0.052 | 0.026 | 70.0 | 66.0 | 52.0 | 86.0 | 50.0 | 54.0 |
| J070 | chr3 | 53240289 | 53241149 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J071 | chr3 | 53240348 | 53241131 | TRUE | OK | 7871.0 | 0.00201 | 0.8314 | 0.9567 | 0.016 | 0.008 | 9216.0 | 7415.0 | 7334.0 | 8246.0 | 7203.0 | 8130.0 |
| J072 | chr3 | 53241245 | 53242124 | TRUE | OK | 5763.7 | 0.00556 | 0.9819 | 0.9963 | 0.005 | 0.002 | 7222.0 | 5357.0 | 5122.0 | 6409.0 | 4963.0 | 5858.0 |
| J073 | chr3 | 53242242 | 53243582 | TRUE | OK | 8.0 | 0.111 | 0.5558 | 0.8679 | 0.512 | 0.256 | 8.0 | 4.0 | 8.0 | 11.0 | 2.0 | 15.0 |
| J074 | chr3 | 53242242 | 53255835 | TRUE | OK | 5989.0 | 0.0172 | 0.1584 | 0.6952 | -0.289 | -0.144 | 8171.0 | 6105.0 | 5813.0 | 6573.0 | 3968.0 | 5775.0 |
| J075 | chr3 | 53243622 | 53255835 | TRUE | OK | 10.2 | 0.0636 | 0.4327 | 0.8229 | 0.509 | 0.254 | 11.0 | 8.0 | 7.0 | 13.0 | 4.0 | 19.0 |
| N076 | chr3 | 53231550 | 53232738 | TRUE | OK | 54.0 | 0.00658 | 0.954 | 0.9898 | -0.013 | -0.006 | 52.0 | 49.0 | 63.0 | 57.0 | 53.0 | 49.0 |
| N077 | chr3 | 53235064 | 53237796 | TRUE | OK | 17.1 | 0.00797 | 0.4561 | 0.8314 | -0.238 | -0.119 | 23.0 | 20.0 | 14.0 | 19.0 | 10.0 | 18.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000163931.16 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |