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Normalized Counts Table (ENSG00000143947.13)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr2	55231902	55232108	TRUE	OK	51.8	0.0181	0.1815	0.7118	-0.412	-0.206	62.3	54.4	43.2	57.3	51.3	42.4
E002	chr2	55232401	55232404	TRUE	OK	18.8	0.0417	0.1763	0.7078	-0.621	-0.311	24.7	22.8	14.4	10.9	15.7	24.2
E003	chr2	55232404	55232431	TRUE	OK	29.4	0.0363	0.2259	0.7383	-0.488	-0.244	34.1	35.6	23.3	17.8	27.2	38.3
E004	chr2	55232431	55232518	TRUE	OK	62.3	0.0128	0.2388	0.7444	-0.304	-0.152	65.7	66.3	53.2	44.5	72.3	71.6
E005	chr2	55232518	55232677	TRUE	OK	594.8	0.00223	0.8966	0.975	-0.002	-0.001	527.1	531.5	529.9	603.8	827.5	548.7
E006	chr2	55232677	55232680	TRUE	OK	573.9	0.00319	0.9479	0.9884	-0.006	-0.003	520.3	505.8	508.8	596.9	800.3	511.4
E007	chr2	55232680	55232687	TRUE	OK	627.2	0.00339	0.9988	1	-0.014	-0.007	574.0	554.3	554.3	652.3	866.3	561.8
E008	chr2	55232687	55232688	TRUE	OK	706.4	0.00339	0.6729	0.9088	0.028	0.014	631.2	626.5	607.5	745.2	974.2	653.6
E009	chr2	55232688	55232693	TRUE	OK	794.4	0.00304	0.8653	0.9664	0.001	0.001	708.0	719.6	691.7	828.2	1094.7	724.2
E010	chr2	55232693	55232708	TRUE	OK	8860.5	0.00821	0.1532	0.691	-0.250	-0.125	8714.0	8883.5	7977.1	9008.2	10754.9	7825.5
E011	chr2	55232708	55232794	TRUE	OK	1583.3	0.00549	0.2641	0.7556	-0.170	-0.085	1487.6	1483.7	1526.5	1504.2	1946.3	1551.4
E012	chr2	55232794	55232807	TRUE	OK	1945.8	0.00406	0.2669	0.7569	-0.147	-0.074	1740.9	1882.6	1857.9	1848.1	2464.8	1880.2
E013	chr2	55232807	55232872	TRUE	OK	21614.1	0.00884	0.08944	0.6195	-0.310	-0.155	21159.7	21248.1	19441.6	20999.1	27216.8	19619.3
E014	chr2	55232872	55233356	TRUE	OK	178.7	0.00623	0.3232	0.7808	0.132	0.066	152.7	148.5	151.9	177.9	236.7	204.8
E015	chr2	55233356	55233362	TRUE	OK	163.5	0.00862	1.328e-10	1.351e-07	1.163	0.581	88.7	89.1	80.9	241.1	268.2	212.8
E016	chr2	55233362	55233369	TRUE	OK	22066.2	0.00855	0.09255	0.6247	-0.302	-0.151	21522.2	21611.4	19850.7	21398.3	27942.7	20072.2
E017	chr2	55233369	55233417	TRUE	OK	30337.2	0.00943	0.1841	0.7136	-0.262	-0.131	28698.2	29167.5	26724.8	29423.2	40253.2	27756.5
E018	chr2	55233417	55233718	TRUE	OK	302.1	0.00656	0.7252	0.9253	-0.085	-0.043	265.3	302.9	264.9	302.4	367.7	309.7
E019	chr2	55233718	55233833	TRUE	OK	44.8	0.028	0.585	0.8785	0.152	0.076	36.7	40.6	35.5	44.5	46.1	65.6
E020	chr2	55234118	55234204	TRUE	OK	37515.4	0.00577	0.4259	0.8205	-0.124	-0.062	34287.7	34942.0	32418.2	35589.1	53569.4	34285.8
E021	chr2	55234204	55234240	TRUE	OK	245.5	0.00446	0.0006537	0.05932	0.443	0.221	167.2	218.7	160.7	281.7	388.6	256.2
E022	chr2	55234240	55234241	TRUE	OK	21.8	0.0291	0.08916	0.6191	0.605	0.302	17.1	17.8	10.0	30.6	25.1	30.3
E023	chr2	55234241	55234301	TRUE	OK	29.0	0.0288	0.2171	0.7336	0.400	0.200	23.0	24.7	17.7	40.5	30.4	37.3
E024	chr2	55234301	55234561	TRUE	OK	58.2	0.0206	0.3878	0.8053	0.195	0.097	56.3	53.4	33.3	61.3	71.2	73.6
E025	chr2	55234561	55234830	TRUE	OK	548.6	0.00511	1.507e-19	5.712e-16	1.177	0.588	304.5	273.2	288.2	768.9	988.9	667.8
E026	chr2	55234830	55234923	TRUE	OK	37967.6	0.00522	0.4063	0.8127	0.116	0.058	34062.6	34216.5	31781.9	35534.7	57576.2	34633.8
E027	chr2	55234923	55234959	TRUE	OK	30475.8	0.00479	0.3389	0.7868	0.146	0.073	26452.3	26970.2	25989.8	27633.4	48361.1	27447.8
E028	chr2	55234959	55234962	TRUE	OK	26356.8	0.00385	0.2853	0.7648	0.143	0.072	22577.3	23383.1	22449.1	23757.4	42117.8	23855.8
E029	chr2	55234962	55235184	TRUE	OK	549.4	0.00646	0.05932	0.5582	0.274	0.137	358.2	462.2	497.7	528.7	916.6	532.6
E030	chr2	55235427	55235588	TRUE	OK	28034.3	0.00461	0.3179	0.7785	0.149	0.074	24017.1	24787.6	24009.9	25267.5	44848.7	25275.1
E031	chr2	55235588	55235609	TRUE	OK	6250.4	0.00151	0.0009805	0.07734	-0.212	-0.106	5726.8	6002.2	6170.2	5336.7	8959.5	5306.8
E032	chr2	55235609	55235755	TRUE	OK	82.9	0.0062	0.4133	0.8157	-0.176	-0.088	79.3	77.2	79.8	86.0	96.4	78.7
E033	chr2	55235755	55235853	TRUE	OK	49.3	0.00676	0.0879	0.6172	-0.394	-0.197	48.6	53.4	49.9	50.4	51.3	42.4
J034	chr2	55232108	55232807	TRUE	OK	31.5	0.0284	0.9002	0.9759	-0.047	-0.024	26.4	31.7	27.7	45.5	36.7	21.2
J035	chr2	55232518	55232807	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.167	0.5145	NA	NA	NA	0.9	1.0	0.0	0.0	0.0	1.0
J036	chr2	55232708	55232807	TRUE	OK	8769.6	0.00821	0.1546	0.6922	-0.249	-0.125	8620.1	8792.4	7898.4	8915.3	10637.6	7753.9
J037	chr2	55232872	55233362	TRUE	OK	21389.3	0.00881	0.08755	0.6164	-0.310	-0.155	20949.8	21049.2	19247.6	20766.8	26912.0	19410.5
J038	chr2	55233417	55234118	TRUE	OK	29107.0	0.00944	0.1993	0.7229	-0.252	-0.126	27721.6	28037.2	25442.2	28274.8	38619.1	26547.0
J039	chr2	55234204	55234830	TRUE	OK	27014.1	0.00276	0.8773	0.9697	-0.012	-0.006	24833.4	24541.2	22942.4	25352.4	39972.5	24442.9
J040	chr2	55234240	55234241	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.249	0.9094	NA	NA	NA	0.0	0.0	1.1	1.0	0.0	0.0
J041	chr2	55234561	55234830	TRUE	OK	5.4	0.0202	0.5976	0.8826	0.289	0.145	2.6	6.9	3.3	4.0	8.4	7.1
J042	chr2	55234962	55235427	TRUE	OK	25844.7	0.00373	0.2968	0.7701	0.139	0.070	22165.3	22933.7	22000.1	23243.4	41353.1	23372.6
N043	chr2	55232632	55232807	TRUE	OK	14.4	0.0109	0.9485	0.9885	0.008	0.004	10.2	10.9	17.7	12.8	17.8	17.1
N044	chr2	55234962	55235412	TRUE	OK	16.3	0.00676	0.6884	0.9137	-0.140	-0.070	14.5	14.8	16.6	17.8	21.0	13.1

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000143947.13
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE