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Raw Counts Table (ENSG00000143947.13)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Raw Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr2	55231902	55232108	TRUE	OK	51.8	0.0181	0.1815	0.7118	-0.412	-0.206	73.0	55.0	39.0	58.0	49.0	42.0
E002	chr2	55232401	55232404	TRUE	OK	18.8	0.0417	0.1763	0.7078	-0.621	-0.311	29.0	23.0	13.0	11.0	15.0	24.0
E003	chr2	55232404	55232431	TRUE	OK	29.4	0.0363	0.2259	0.7383	-0.488	-0.244	40.0	36.0	21.0	18.0	26.0	38.0
E004	chr2	55232431	55232518	TRUE	OK	62.3	0.0128	0.2388	0.7444	-0.304	-0.152	77.0	67.0	48.0	45.0	69.0	71.0
E005	chr2	55232518	55232677	TRUE	OK	594.8	0.00223	0.8966	0.975	-0.002	-0.001	618.0	537.0	478.0	611.0	790.0	544.0
E006	chr2	55232677	55232680	TRUE	OK	573.9	0.00319	0.9479	0.9884	-0.006	-0.003	610.0	511.0	459.0	604.0	764.0	507.0
E007	chr2	55232680	55232687	TRUE	OK	627.2	0.00339	0.9988	1	-0.014	-0.007	673.0	560.0	500.0	660.0	827.0	557.0
E008	chr2	55232687	55232688	TRUE	OK	706.4	0.00339	0.6729	0.9088	0.028	0.014	740.0	633.0	548.0	754.0	930.0	648.0
E009	chr2	55232688	55232693	TRUE	OK	794.4	0.00304	0.8653	0.9664	0.001	0.001	830.0	727.0	624.0	838.0	1045.0	718.0
E010	chr2	55232693	55232708	TRUE	OK	8860.5	0.00821	0.1532	0.691	-0.250	-0.125	10216.0	8975.0	7196.0	9115.0	10267.0	7758.0
E011	chr2	55232708	55232794	TRUE	OK	1583.3	0.00549	0.2641	0.7556	-0.170	-0.085	1744.0	1499.0	1377.0	1522.0	1858.0	1538.0
E012	chr2	55232794	55232807	TRUE	OK	1945.8	0.00406	0.2669	0.7569	-0.147	-0.074	2041.0	1902.0	1676.0	1870.0	2353.0	1864.0
E013	chr2	55232807	55232872	TRUE	OK	21614.1	0.00884	0.08944	0.6195	-0.310	-0.155	24807.0	21467.0	17538.0	21248.0	25982.0	19450.0
E014	chr2	55232872	55233356	TRUE	OK	178.7	0.00623	0.3232	0.7808	0.132	0.066	179.0	150.0	137.0	180.0	226.0	203.0
E015	chr2	55233356	55233362	TRUE	OK	163.5	0.00862	1.328e-10	1.351e-07	1.163	0.581	104.0	90.0	73.0	244.0	256.0	211.0
E016	chr2	55233362	55233369	TRUE	OK	22066.2	0.00855	0.09255	0.6247	-0.302	-0.151	25232.0	21834.0	17907.0	21652.0	26675.0	19899.0
E017	chr2	55233369	55233417	TRUE	OK	30337.2	0.00943	0.1841	0.7136	-0.262	-0.131	33645.0	29468.0	24108.0	29772.0	38427.0	27517.0
E018	chr2	55233417	55233718	TRUE	OK	302.1	0.00656	0.7252	0.9253	-0.085	-0.043	311.0	306.0	239.0	306.0	351.0	307.0
E019	chr2	55233718	55233833	TRUE	OK	44.8	0.028	0.585	0.8785	0.152	0.076	43.0	41.0	32.0	45.0	44.0	65.0
E020	chr2	55234118	55234204	TRUE	OK	37515.4	0.00577	0.4259	0.8205	-0.124	-0.062	40198.0	35302.0	29244.0	36011.0	51139.0	33990.0
E021	chr2	55234204	55234240	TRUE	OK	245.5	0.00446	0.0006537	0.05932	0.443	0.221	196.0	221.0	145.0	285.0	371.0	254.0
E022	chr2	55234240	55234241	TRUE	OK	21.8	0.0291	0.08916	0.6191	0.605	0.302	20.0	18.0	9.0	31.0	24.0	30.0
E023	chr2	55234241	55234301	TRUE	OK	29.0	0.0288	0.2171	0.7336	0.400	0.200	27.0	25.0	16.0	41.0	29.0	37.0
E024	chr2	55234301	55234561	TRUE	OK	58.2	0.0206	0.3878	0.8053	0.195	0.097	66.0	54.0	30.0	62.0	68.0	73.0
E025	chr2	55234561	55234830	TRUE	OK	548.6	0.00511	1.507e-19	5.712e-16	1.177	0.588	357.0	276.0	260.0	778.0	944.0	662.0
E026	chr2	55234830	55234923	TRUE	OK	37967.6	0.00522	0.4063	0.8127	0.116	0.058	39934.0	34569.0	28670.0	35956.0	54964.0	34335.0
E027	chr2	55234923	55234959	TRUE	OK	30475.8	0.00479	0.3389	0.7868	0.146	0.073	31012.0	27248.0	23445.0	27961.0	46167.0	27211.0
E028	chr2	55234959	55234962	TRUE	OK	26356.8	0.00385	0.2853	0.7648	0.143	0.072	26469.0	23624.0	20251.0	24039.0	40207.0	23650.0
E029	chr2	55234962	55235184	TRUE	OK	549.4	0.00646	0.05932	0.5582	0.274	0.137	420.0	467.0	449.0	535.0	875.0	528.0
E030	chr2	55235427	55235588	TRUE	OK	28034.3	0.00461	0.3179	0.7785	0.149	0.074	28157.0	25043.0	21659.0	25567.0	42814.0	25057.0
E031	chr2	55235588	55235609	TRUE	OK	6250.4	0.00151	0.0009805	0.07734	-0.212	-0.106	6714.0	6064.0	5566.0	5400.0	8553.0	5261.0
E032	chr2	55235609	55235755	TRUE	OK	82.9	0.0062	0.4133	0.8157	-0.176	-0.088	93.0	78.0	72.0	87.0	92.0	78.0
E033	chr2	55235755	55235853	TRUE	OK	49.3	0.00676	0.0879	0.6172	-0.394	-0.197	57.0	54.0	45.0	51.0	49.0	42.0
J034	chr2	55232108	55232807	TRUE	OK	31.5	0.0284	0.9002	0.9759	-0.047	-0.024	31.0	32.0	25.0	46.0	35.0	21.0
J035	chr2	55232518	55232807	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.167	0.5145	NA	NA	NA	1.0	1.0	0.0	0.0	0.0	1.0
J036	chr2	55232708	55232807	TRUE	OK	8769.6	0.00821	0.1546	0.6922	-0.249	-0.125	10106.0	8883.0	7125.0	9021.0	10155.0	7687.0
J037	chr2	55232872	55233362	TRUE	OK	21389.3	0.00881	0.08755	0.6164	-0.310	-0.155	24561.0	21266.0	17363.0	21013.0	25691.0	19243.0
J038	chr2	55233417	55234118	TRUE	OK	29107.0	0.00944	0.1993	0.7229	-0.252	-0.126	32500.0	28326.0	22951.0	28610.0	36867.0	26318.0
J039	chr2	55234204	55234830	TRUE	OK	27014.1	0.00276	0.8773	0.9697	-0.012	-0.006	29114.0	24794.0	20696.0	25653.0	38159.0	24232.0
J040	chr2	55234240	55234241	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.249	0.9094	NA	NA	NA	0.0	0.0	1.0	1.0	0.0	0.0
J041	chr2	55234561	55234830	TRUE	OK	5.4	0.0202	0.5976	0.8826	0.289	0.145	3.0	7.0	3.0	4.0	8.0	7.0
J042	chr2	55234962	55235427	TRUE	OK	25844.7	0.00373	0.2968	0.7701	0.139	0.070	25986.0	23170.0	19846.0	23519.0	39477.0	23171.0
N043	chr2	55232632	55232807	TRUE	OK	14.4	0.0109	0.9485	0.9885	0.008	0.004	12.0	11.0	16.0	13.0	17.0	17.0
N044	chr2	55234962	55235412	TRUE	OK	16.3	0.00676	0.6884	0.9137	-0.140	-0.070	17.0	15.0	15.0	18.0	20.0	13.0

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000143947.13
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE