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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr11 | 18394559 | 18394560 | TRUE | OK | 58.3 | 0.00606 | 0.01768 | 0.3697 | -0.483 | -0.242 | 77.0 | 76.0 | 44.0 | 57.0 | 48.0 | 53.0 |
| E002 | chr11 | 18394560 | 18394561 | TRUE | OK | 60.6 | 0.00516 | 0.01212 | 0.3137 | -0.487 | -0.244 | 80.0 | 78.0 | 47.0 | 60.0 | 50.0 | 54.0 |
| E003 | chr11 | 18394561 | 18394562 | TRUE | OK | 61.0 | 0.00475 | 0.01082 | 0.2984 | -0.486 | -0.243 | 80.0 | 78.0 | 48.0 | 60.0 | 50.0 | 55.0 |
| E004 | chr11 | 18394562 | 18394585 | TRUE | OK | 4504.3 | 0.0108 | 0.01686 | 0.3627 | -0.398 | -0.199 | 5519.0 | 4711.0 | 4408.0 | 4936.0 | 3133.0 | 4569.0 |
| E005 | chr11 | 18394585 | 18394611 | TRUE | OK | 13001.0 | 0.0123 | 0.05423 | 0.5451 | -0.335 | -0.168 | 15652.0 | 13415.0 | 12169.0 | 14823.0 | 9207.0 | 13476.0 |
| E006 | chr11 | 18394611 | 18394636 | TRUE | OK | 15848.8 | 0.0122 | 0.08026 | 0.603 | -0.302 | -0.151 | 18876.0 | 16301.0 | 14504.0 | 18319.0 | 11439.0 | 16548.0 |
| E007 | chr11 | 18394636 | 18394641 | TRUE | OK | 15.8 | 0.0109 | 0.444 | 0.8274 | -0.261 | -0.131 | 16.0 | 19.0 | 14.0 | 13.0 | 13.0 | 20.0 |
| E008 | chr11 | 18394641 | 18394703 | TRUE | OK | 3.6 | 0.107 | 0.1322 | 0.6722 | 1.266 | 0.633 | 5.0 | 0.0 | 1.0 | 8.0 | 5.0 | 3.0 |
| E009 | chr11 | 18394703 | 18394886 | TRUE | OK | 6.8 | 0.0348 | 0.1048 | 0.6415 | 0.940 | 0.470 | 6.0 | 4.0 | 3.0 | 15.0 | 6.0 | 7.0 |
| E010 | chr11 | 18395123 | 18395273 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.8 | 0.0461 | 0.3923 | NA | NA | NA | 5.0 | 2.0 | 3.0 | 3.0 | 3.0 | 1.0 |
| E011 | chr11 | 18396265 | 18396277 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.9 | 0.149 | 0.6989 | NA | NA | NA | 4.0 | 1.0 | 2.0 | 8.0 | 2.0 | 1.0 |
| E012 | chr11 | 18396277 | 18396479 | TRUE | OK | 34.4 | 0.00943 | 0.01264 | 0.3201 | 0.663 | 0.331 | 25.0 | 24.0 | 25.0 | 45.0 | 33.0 | 54.0 |
| E013 | chr11 | 18396479 | 18396553 | TRUE | OK | 40.6 | 0.00773 | 0.02196 | 0.4025 | 0.554 | 0.277 | 33.0 | 30.0 | 29.0 | 51.0 | 39.0 | 62.0 |
| E014 | chr11 | 18396553 | 18396610 | TRUE | OK | 39.4 | 0.00504 | 0.04062 | 0.5006 | 0.461 | 0.231 | 33.0 | 32.0 | 28.0 | 50.0 | 40.0 | 54.0 |
| E015 | chr11 | 18396610 | 18396817 | TRUE | OK | 16.9 | 0.0505 | 0.1811 | 0.7114 | -0.587 | -0.293 | 17.0 | 21.0 | 20.0 | 20.0 | 5.0 | 19.0 |
| E016 | chr11 | 18396817 | 18396818 | TRUE | OK | 399.5 | 0.025 | 0.1922 | 0.7187 | -0.356 | -0.178 | 353.0 | 459.0 | 448.0 | 377.0 | 280.0 | 475.0 |
| E017 | chr11 | 18396818 | 18396842 | TRUE | OK | 19921.5 | 0.0118 | 0.09125 | 0.6228 | -0.287 | -0.144 | 23569.0 | 20287.0 | 18162.0 | 23014.0 | 14643.0 | 20946.0 |
| E018 | chr11 | 18396842 | 18396954 | TRUE | OK | 36617.8 | 0.00765 | 0.1303 | 0.6702 | -0.212 | -0.106 | 41384.0 | 35901.0 | 33159.0 | 41290.0 | 30051.0 | 39485.0 |
| E019 | chr11 | 18396954 | 18396968 | TRUE | OK | 32881.4 | 0.0065 | 0.119 | 0.6595 | -0.202 | -0.101 | 37395.0 | 32078.0 | 29622.0 | 36935.0 | 27371.0 | 35322.0 |
| E020 | chr11 | 18396968 | 18397398 | TRUE | OK | 585.0 | 0.0193 | 0.6887 | 0.9139 | 0.074 | 0.037 | 440.0 | 561.0 | 580.0 | 673.0 | 522.0 | 718.0 |
| E021 | chr11 | 18398629 | 18398797 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.1 | 0.12 | 0.8369 | NA | NA | NA | 2.0 | 1.0 | 0.0 | 2.0 | 0.0 | 2.0 |
| E022 | chr11 | 18398797 | 18398865 | TRUE | OK | 9.5 | 0.0725 | 0.5435 | 0.8634 | -0.395 | -0.197 | 19.0 | 5.0 | 8.0 | 11.0 | 4.0 | 12.0 |
| E023 | chr11 | 18398865 | 18398988 | TRUE | OK | 9.1 | 0.0866 | 0.7084 | 0.9199 | -0.155 | -0.078 | 14.0 | 8.0 | 6.0 | 8.0 | 3.0 | 17.0 |
| E024 | chr11 | 18398988 | 18399430 | TRUE | OK | 654.0 | 0.00957 | 7.083e-07 | 0.0002669 | 0.843 | 0.421 | 418.0 | 415.0 | 453.0 | 901.0 | 744.0 | 976.0 |
| E025 | chr11 | 18399430 | 18399521 | TRUE | OK | 40321.3 | 0.00694 | 0.0726 | 0.5887 | -0.242 | -0.121 | 46995.0 | 39387.0 | 36262.0 | 45256.0 | 33352.0 | 42625.0 |
| E026 | chr11 | 18399521 | 18399548 | TRUE | OK | 28660.2 | 0.00512 | 0.05589 | 0.5495 | -0.223 | -0.111 | 34228.0 | 27871.0 | 25232.0 | 32004.0 | 24251.0 | 29915.0 |
| E027 | chr11 | 18399548 | 18399725 | TRUE | OK | 49.0 | 0.0304 | 0.3783 | 0.8016 | 0.315 | 0.157 | 60.0 | 36.0 | 29.0 | 57.0 | 37.0 | 79.0 |
| E028 | chr11 | 18399725 | 18400360 | TRUE | OK | 101.4 | 0.0195 | 0.514 | 0.853 | -0.144 | -0.072 | 128.0 | 97.0 | 81.0 | 100.0 | 71.0 | 139.0 |
| E029 | chr11 | 18400360 | 18400629 | TRUE | OK | 49.2 | 0.0389 | 0.8035 | 0.9486 | -0.095 | -0.048 | 69.0 | 53.0 | 26.0 | 39.0 | 42.0 | 72.0 |
| E030 | chr11 | 18400629 | 18400745 | TRUE | OK | 39.2 | 0.0396 | 0.8454 | 0.9607 | 0.020 | 0.010 | 64.0 | 30.0 | 20.0 | 43.0 | 32.0 | 52.0 |
| E031 | chr11 | 18400745 | 18400836 | TRUE | OK | 501.5 | 0.00464 | 3.971e-13 | 6.258e-10 | 0.924 | 0.462 | 327.0 | 333.0 | 296.0 | 738.0 | 581.0 | 728.0 |
| E032 | chr11 | 18400836 | 18400872 | TRUE | OK | 27630.1 | 0.00492 | 0.03055 | 0.4553 | -0.248 | -0.124 | 33323.0 | 26956.0 | 24588.0 | 30685.0 | 23298.0 | 28441.0 |
| E033 | chr11 | 18400872 | 18400906 | TRUE | OK | 32521.2 | 0.00547 | 0.1771 | 0.7085 | -0.163 | -0.082 | 39255.0 | 31320.0 | 26944.0 | 37163.0 | 28455.0 | 33944.0 |
| E034 | chr11 | 18400906 | 18400934 | TRUE | OK | 33767.7 | 0.00493 | 0.2967 | 0.77 | -0.119 | -0.059 | 39863.0 | 32325.0 | 27672.0 | 38916.0 | 30108.0 | 35624.0 |
| E035 | chr11 | 18400934 | 18400935 | TRUE | OK | 29241.3 | 0.00503 | 0.4054 | 0.8125 | -0.095 | -0.048 | 34374.0 | 28093.0 | 23522.0 | 34010.0 | 26181.0 | 30940.0 |
| E036 | chr11 | 18400935 | 18400936 | TRUE | OK | 29160.0 | 0.00502 | 0.4025 | 0.8112 | -0.096 | -0.048 | 34261.0 | 28026.0 | 23472.0 | 33924.0 | 26098.0 | 30843.0 |
| E037 | chr11 | 18400936 | 18401010 | TRUE | OK | 34703.0 | 0.00452 | 0.3482 | 0.7905 | -0.103 | -0.051 | 40834.0 | 33111.0 | 28193.0 | 39982.0 | 31441.0 | 36594.0 |
| E038 | chr11 | 18401010 | 18401025 | TRUE | OK | 39.4 | 0.00543 | 0.4208 | 0.8186 | 0.184 | 0.092 | 34.0 | 38.0 | 32.0 | 50.0 | 36.0 | 47.0 |
| E039 | chr11 | 18402534 | 18402839 | TRUE | OK | 217.4 | 0.00435 | 5.177e-46 | 9.104e-42 | 2.123 | 1.062 | 78.0 | 82.0 | 60.0 | 416.0 | 324.0 | 337.0 |
| E040 | chr11 | 18402839 | 18402891 | TRUE | OK | 30976.6 | 0.00318 | 0.824 | 0.9545 | -0.021 | -0.011 | 35834.0 | 29066.0 | 24182.0 | 35510.0 | 29811.0 | 33108.0 |
| E041 | chr11 | 18402891 | 18403013 | TRUE | OK | 38666.2 | 0.00127 | 0.3708 | 0.799 | -0.054 | -0.027 | 44056.0 | 36304.0 | 31568.0 | 42806.0 | 38176.0 | 40840.0 |
| E042 | chr11 | 18403693 | 18403737 | TRUE | OK | 30175.0 | 0.000622 | 0.6611 | 0.9048 | -0.019 | -0.009 | 33733.0 | 28056.0 | 24629.0 | 33229.0 | 30926.0 | 31693.0 |
| E043 | chr11 | 18403737 | 18403759 | TRUE | OK | 27157.2 | 0.000587 | 0.844 | 0.9603 | 0.008 | 0.004 | 30062.0 | 25134.0 | 21933.0 | 30156.0 | 28039.0 | 28686.0 |
| E044 | chr11 | 18403759 | 18403784 | TRUE | OK | 29713.6 | 0.00035 | 0.8479 | 0.9614 | 0.006 | 0.003 | 32496.0 | 27773.0 | 24104.0 | 32891.0 | 30603.0 | 31516.0 |
| E045 | chr11 | 18403784 | 18403788 | TRUE | OK | 26247.1 | 0.000611 | 0.5048 | 0.8495 | 0.028 | 0.014 | 28789.0 | 24389.0 | 20901.0 | 29253.0 | 27260.0 | 27908.0 |
| E046 | chr11 | 18403788 | 18403811 | TRUE | OK | 29671.5 | 0.000689 | 0.2806 | 0.7629 | 0.047 | 0.024 | 32316.0 | 27528.0 | 23399.0 | 33098.0 | 31129.0 | 31684.0 |
| E047 | chr11 | 18405448 | 18405495 | TRUE | OK | 31827.2 | 0.000729 | 0.1021 | 0.6378 | 0.074 | 0.037 | 34410.0 | 29214.0 | 24938.0 | 35909.0 | 33726.0 | 33939.0 |
| E048 | chr11 | 18405495 | 18405572 | TRUE | OK | 35546.0 | 0.000965 | 0.1053 | 0.6423 | 0.084 | 0.042 | 38387.0 | 32527.0 | 27753.0 | 40151.0 | 38157.0 | 37594.0 |
| E049 | chr11 | 18405572 | 18405574 | TRUE | OK | 351.0 | 0.00301 | 5.11e-05 | 0.009043 | 0.454 | 0.227 | 310.0 | 293.0 | 229.0 | 459.0 | 440.0 | 380.0 |
| E050 | chr11 | 18407116 | 18407158 | TRUE | OK | 28147.9 | 0.00152 | 0.1385 | 0.6779 | 0.097 | 0.048 | 30417.0 | 25745.0 | 21608.0 | 32141.0 | 30646.0 | 29384.0 |
| E051 | chr11 | 18407158 | 18407238 | TRUE | OK | 33092.5 | 0.00191 | 0.2447 | 0.7472 | 0.085 | 0.043 | 36363.0 | 29935.0 | 25609.0 | 38149.0 | 35683.0 | 34142.0 |
| E052 | chr11 | 18407238 | 18407281 | TRUE | OK | 29903.9 | 0.00271 | 0.2408 | 0.7456 | 0.102 | 0.051 | 33223.0 | 26781.0 | 22674.0 | 35217.0 | 32059.0 | 30787.0 |
| E053 | chr11 | 18407281 | 18407584 | TRUE | OK | 64364.3 | 0.005 | 0.1596 | 0.6959 | 0.168 | 0.084 | 69125.0 | 56872.0 | 49934.0 | 71755.0 | 74632.0 | 65911.0 |
| E054 | chr11 | 18407584 | 18407642 | TRUE | OK | 27416.6 | 0.00305 | 0.6914 | 0.9146 | -0.034 | -0.017 | 31066.0 | 25569.0 | 22330.0 | 29959.0 | 30111.0 | 26558.0 |
| E055 | chr11 | 18407642 | 18407667 | TRUE | OK | 18857.1 | 0.00338 | 0.5581 | 0.8688 | -0.056 | -0.028 | 21905.0 | 18177.0 | 14796.0 | 20754.0 | 20254.0 | 18179.0 |
| E056 | chr11 | 18407667 | 18407740 | TRUE | OK | 18650.6 | 0.00328 | 0.4691 | 0.8365 | -0.068 | -0.034 | 21686.0 | 18019.0 | 14770.0 | 20599.0 | 19895.0 | 17844.0 |
| E057 | chr11 | 18407740 | 18407847 | TRUE | OK | 10454.1 | 0.00309 | 0.01372 | 0.3324 | -0.227 | -0.113 | 12743.0 | 10386.0 | 9063.0 | 11518.0 | 10228.0 | 9350.0 |
| E058 | chr11 | 18407847 | 18408218 | TRUE | OK | 231.4 | 0.0075 | 0.7654 | 0.9377 | -0.040 | -0.020 | 244.0 | 230.0 | 192.0 | 214.0 | 286.0 | 227.0 |
| E059 | chr11 | 18408218 | 18408425 | TRUE | OK | 85.5 | 0.00323 | 0.2341 | 0.7425 | -0.187 | -0.094 | 88.0 | 93.0 | 78.0 | 94.0 | 84.0 | 78.0 |
| J060 | chr11 | 18394636 | 18395123 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.5 | 0.4989 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J061 | chr11 | 18394636 | 18396818 | TRUE | OK | 15826.4 | 0.0125 | 0.08346 | 0.6091 | -0.302 | -0.151 | 18856.0 | 16276.0 | 14485.0 | 18299.0 | 11423.0 | 16513.0 |
| J062 | chr11 | 18394641 | 18396818 | TRUE | OK | 13.2 | 0.0223 | 0.4821 | 0.8412 | -0.284 | -0.142 | 11.0 | 18.0 | 12.0 | 11.0 | 9.0 | 18.0 |
| J063 | chr11 | 18394886 | 18396479 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.531 | 0.6093 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| J064 | chr11 | 18394886 | 18396818 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.0583 | 0.656 | NA | NA | NA | 2.0 | 2.0 | 2.0 | 6.0 | 1.0 | 2.0 |
| J065 | chr11 | 18395273 | 18396818 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.9 | 0.119 | 0.01134 | NA | NA | NA | 4.0 | 1.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J066 | chr11 | 18396610 | 18396818 | TRUE | OK | 21.5 | 0.00494 | 0.01707 | 0.3644 | 0.683 | 0.342 | 17.0 | 15.0 | 14.0 | 28.0 | 26.0 | 29.0 |
| J067 | chr11 | 18396954 | 18400906 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.23 | 0.6019 | NA | NA | NA | 4.0 | 0.0 | 0.0 | 1.0 | 2.0 | 3.0 |
| J068 | chr11 | 18396968 | 18398797 | TRUE | OK | 7.0 | 0.0187 | 0.06981 | 0.5824 | -0.919 | -0.460 | 14.0 | 5.0 | 8.0 | 6.0 | 4.0 | 6.0 |
| J069 | chr11 | 18396968 | 18399430 | TRUE | OK | 30413.2 | 0.00587 | 0.1052 | 0.6421 | -0.200 | -0.100 | 34872.0 | 29438.0 | 27420.0 | 34032.0 | 25489.0 | 32583.0 |
| J070 | chr11 | 18396968 | 18400836 | TRUE | OK | 151.0 | 0.0143 | 0.1216 | 0.6617 | -0.346 | -0.173 | 143.0 | 164.0 | 170.0 | 152.0 | 113.0 | 163.0 |
| J071 | chr11 | 18396968 | 18402839 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.11 | 0.7734 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 2.0 | 0.0 | 1.0 |
| J072 | chr11 | 18398988 | 18399430 | TRUE | OK | 5.1 | 0.0188 | 0.426 | 0.8206 | -0.449 | -0.225 | 6.0 | 6.0 | 5.0 | 4.0 | 3.0 | 7.0 |
| J073 | chr11 | 18399548 | 18400629 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.842 | 0.3798 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 3.0 |
| J074 | chr11 | 18399548 | 18400836 | TRUE | OK | 23331.9 | 0.00471 | 0.01045 | 0.294 | -0.288 | -0.144 | 28435.0 | 22903.0 | 21303.0 | 25460.0 | 19351.0 | 23813.0 |
| J075 | chr11 | 18399548 | 18402839 | TRUE | OK | 68.4 | 0.00613 | 0.07278 | 0.5891 | -0.343 | -0.172 | 89.0 | 63.0 | 68.0 | 77.0 | 49.0 | 69.0 |
| J076 | chr11 | 18399548 | 18403737 | TRUE | OK | 153.7 | 0.0037 | 0.5191 | 0.8548 | 0.093 | 0.047 | 166.0 | 128.0 | 128.0 | 201.0 | 153.0 | 152.0 |
| J077 | chr11 | 18400745 | 18400836 | TRUE | OK | 3.5 | 0.452 | 0.2498 | 0.7495 | 1.320 | 0.660 | 6.0 | 0.0 | 0.0 | 11.0 | 3.0 | 2.0 |
| J078 | chr11 | 18401010 | 18402839 | TRUE | OK | 25215.3 | 0.00389 | 0.7469 | 0.9318 | -0.034 | -0.017 | 29525.0 | 23852.0 | 19509.0 | 29073.0 | 23736.0 | 27041.0 |
| J079 | chr11 | 18403013 | 18403693 | TRUE | OK | 22762.0 | 0.00033 | 0.005836 | 0.2198 | -0.087 | -0.043 | 25856.0 | 21522.0 | 19222.0 | 24404.0 | 22968.0 | 23524.0 |
| J080 | chr11 | 18403788 | 18407238 | TRUE | OK | 44.2 | 0.0126 | 0.2192 | 0.7349 | -0.325 | -0.163 | 42.0 | 61.0 | 37.0 | 40.0 | 38.0 | 48.0 |
| J081 | chr11 | 18403811 | 18405448 | TRUE | OK | 26500.7 | 0.000494 | 0.2739 | 0.7599 | 0.041 | 0.020 | 28990.0 | 24480.0 | 21008.0 | 29593.0 | 27684.0 | 28266.0 |
| J082 | chr11 | 18403811 | 18407116 | TRUE | OK | 26.8 | 0.00492 | 0.8084 | 0.95 | 0.064 | 0.032 | 27.0 | 22.0 | 25.0 | 34.0 | 29.0 | 24.0 |
| J083 | chr11 | 18405572 | 18407116 | TRUE | OK | 22616.7 | 0.00146 | 0.09566 | 0.6289 | 0.107 | 0.053 | 24500.0 | 20629.0 | 17127.0 | 25818.0 | 24725.0 | 23775.0 |
| N084 | chr11 | 18400429 | 18400461 | TRUE | OK | 13.4 | 0.118 | 0.1891 | 0.7166 | -0.812 | -0.406 | 25.0 | 19.0 | 7.0 | 8.0 | 4.0 | 20.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000134333.14 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |