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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr19 | 18572219 | 18573007 | TRUE | OK | 741.5 | 0.00269 | 3.828e-44 | 6.233e-40 | 1.415 | 0.707 | 754.0 | 670.0 | 589.0 | 748.0 | 898.0 | 803.0 |
| E002 | chr19 | 18583569 | 18583612 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E003 | chr19 | 18593236 | 18593579 | TRUE | OK | 391.3 | 0.0126 | 0.06537 | 0.5731 | -0.319 | -0.160 | 599.0 | 506.0 | 459.0 | 222.0 | 379.0 | 209.0 |
| E004 | chr19 | 18594064 | 18594107 | TRUE | OK | 284.7 | 0.00865 | 0.0508 | 0.5354 | -0.315 | -0.157 | 466.0 | 362.0 | 318.0 | 156.0 | 260.0 | 172.0 |
| E005 | chr19 | 18594107 | 18594134 | TRUE | OK | 73.2 | 0.0217 | 0.3559 | 0.7937 | -0.271 | -0.135 | 133.0 | 100.0 | 64.0 | 37.0 | 58.0 | 58.0 |
| E006 | chr19 | 18594246 | 18594361 | TRUE | OK | 363.3 | 0.00478 | 0.003983 | 0.1789 | -0.374 | -0.187 | 585.0 | 451.0 | 436.0 | 209.0 | 314.0 | 214.0 |
| E007 | chr19 | 18594361 | 18594434 | TRUE | OK | 307.8 | 0.00664 | 0.003274 | 0.1602 | -0.449 | -0.225 | 534.0 | 372.0 | 368.0 | 181.0 | 252.0 | 171.0 |
| E008 | chr19 | 18594434 | 18594435 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.1 | 0.128 | 0.2857 | NA | NA | NA | 2.0 | 1.0 | 5.0 | 6.0 | 3.0 | 1.0 |
| E009 | chr19 | 18596621 | 18596663 | TRUE | OK | 261.1 | 0.00571 | 0.005265 | 0.2081 | -0.411 | -0.205 | 443.0 | 330.0 | 301.0 | 163.0 | 214.0 | 142.0 |
| E010 | chr19 | 18596663 | 18596790 | TRUE | OK | 434.6 | 0.00262 | 7.308e-08 | 3.752e-05 | -0.579 | -0.290 | 690.0 | 584.0 | 548.0 | 279.0 | 314.0 | 227.0 |
| E011 | chr19 | 18596891 | 18597049 | TRUE | OK | 535.9 | 0.00277 | 1.969e-11 | 2.371e-08 | -0.725 | -0.362 | 841.0 | 745.0 | 702.0 | 336.0 | 339.0 | 293.0 |
| E012 | chr19 | 18598431 | 18598593 | TRUE | OK | 553.9 | 0.00318 | 1.221e-11 | 1.507e-08 | -0.768 | -0.384 | 839.0 | 788.0 | 746.0 | 331.0 | 341.0 | 314.0 |
| E013 | chr19 | 18598593 | 18598601 | TRUE | OK | 299.6 | 0.00562 | 5.922e-08 | 3.161e-05 | -0.813 | -0.406 | 461.0 | 448.0 | 406.0 | 182.0 | 164.0 | 158.0 |
| E014 | chr19 | 18598771 | 18598901 | TRUE | OK | 472.0 | 0.00306 | 1.786e-12 | 2.509e-09 | -0.805 | -0.403 | 764.0 | 637.0 | 649.0 | 273.0 | 275.0 | 270.0 |
| E015 | chr19 | 18599564 | 18599699 | TRUE | OK | 372.8 | 0.0043 | 9.64e-07 | 0.0003477 | -0.650 | -0.325 | 618.0 | 456.0 | 513.0 | 219.0 | 236.0 | 224.0 |
| E016 | chr19 | 18599699 | 18599846 | TRUE | OK | 239.2 | 0.00522 | 0.0005932 | 0.05571 | -0.514 | -0.257 | 407.0 | 289.0 | 307.0 | 161.0 | 161.0 | 133.0 |
| E017 | chr19 | 18606541 | 18606799 | TRUE | OK | 75.7 | 0.00864 | 0.009543 | 0.2816 | -0.567 | -0.283 | 142.0 | 97.0 | 87.0 | 49.0 | 44.0 | 46.0 |
| E018 | chr19 | 18607374 | 18607741 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.8 | 0.183 | 0.8984 | NA | NA | NA | 6.0 | 1.0 | 3.0 | 0.0 | 2.0 | 5.0 |
| J019 | chr19 | 18573007 | 18583569 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J020 | chr19 | 18583612 | 18594246 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J021 | chr19 | 18593579 | 18594064 | TRUE | OK | 217.8 | 0.0147 | 0.1871 | 0.7153 | -0.253 | -0.127 | 351.0 | 293.0 | 224.0 | 120.0 | 214.0 | 125.0 |
| J022 | chr19 | 18594107 | 18594246 | TRUE | OK | 142.6 | 0.00315 | 0.01528 | 0.3478 | -0.334 | -0.167 | 224.0 | 181.0 | 171.0 | 78.0 | 128.0 | 84.0 |
| J023 | chr19 | 18594434 | 18596621 | TRUE | OK | 200.2 | 0.00601 | 0.005385 | 0.2108 | -0.434 | -0.217 | 347.0 | 242.0 | 240.0 | 120.0 | 165.0 | 107.0 |
| J024 | chr19 | 18594434 | 18596663 | TRUE | OK | 32.7 | 0.00506 | 0.006583 | 0.2336 | -0.688 | -0.344 | 59.0 | 37.0 | 47.0 | 16.0 | 23.0 | 17.0 |
| J025 | chr19 | 18596790 | 18596891 | TRUE | OK | 270.5 | 0.00357 | 1.68e-07 | 7.743e-05 | -0.676 | -0.338 | 427.0 | 393.0 | 344.0 | 174.0 | 172.0 | 135.0 |
| J026 | chr19 | 18597049 | 18598431 | TRUE | OK | 322.4 | 0.00104 | 1.98e-10 | 1.897e-07 | -0.587 | -0.293 | 492.0 | 437.0 | 428.0 | 196.0 | 215.0 | 187.0 |
| J027 | chr19 | 18598601 | 18598771 | TRUE | OK | 291.1 | 0.00635 | 1.514e-07 | 7.074e-05 | -0.827 | -0.413 | 446.0 | 437.0 | 398.0 | 178.0 | 156.0 | 152.0 |
| J028 | chr19 | 18598901 | 18599564 | TRUE | OK | 255.9 | 0.00676 | 2.095e-05 | 0.00443 | -0.698 | -0.349 | 448.0 | 307.0 | 354.0 | 138.0 | 153.0 | 159.0 |
| J029 | chr19 | 18599846 | 18606541 | TRUE | OK | 69.0 | 0.00903 | 0.01317 | 0.3262 | -0.560 | -0.280 | 131.0 | 88.0 | 78.0 | 46.0 | 41.0 | 40.0 |
| J030 | chr19 | 18599846 | 18607374 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.1 | 0.589 | 0.7973 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| N031 | chr19 | 18571887 | 18572350 | TRUE | OK | 11.4 | 0.0199 | 0.4705 | 0.8369 | -0.330 | -0.165 | 20.0 | 8.0 | 18.0 | 7.0 | 8.0 | 8.0 |
| N032 | chr19 | 18571887 | 18573292 | TRUE | OK | 2828.8 | 3.36 | 0.0618 | 0.5642 | 31.701 | 5.171 | 3488.0 | 2635.0 | 2473.0 | 2948.0 | 2960.0 | 2611.0 |
| N033 | chr19 | 18571909 | 18572350 | TRUE | OK | 32.1 | 0.00433 | 1.719e-06 | 0.0005663 | 1.143 | 0.571 | 29.0 | 27.0 | 25.0 | 29.0 | 48.0 | 34.0 |
| N034 | chr19 | 18571909 | 18573292 | TRUE | OK | 2874.2 | 3.36 | 0.07028 | 0.5833 | 31.921 | 5.272 | 3606.0 | 2759.0 | 2284.0 | 3068.0 | 2926.0 | 2785.0 |
| N035 | chr19 | 18572179 | 18573292 | TRUE | OK | 16.0 | 0.00688 | 0.07017 | 0.5832 | 0.588 | 0.294 | 20.0 | 17.0 | 13.0 | 15.0 | 15.0 | 17.0 |
| N036 | chr19 | 18572607 | 18573292 | TRUE | OK | 169.3 | 0.00156 | 4.876e-12 | 6.38e-09 | 0.792 | 0.396 | 184.0 | 166.0 | 149.0 | 159.0 | 187.0 | 175.0 |
| N037 | chr19 | 18572960 | 18573292 | TRUE | OK | 88.6 | 0.0093 | 6.96e-05 | 0.01154 | 0.838 | 0.419 | 103.0 | 89.0 | 64.0 | 77.0 | 125.0 | 77.0 |
| N038 | chr19 | 18573403 | 18573661 | FALSE | ALL_ZERO | 14434.7 | NA | NA | NA | NA | NA | 17134.0 | 13816.0 | 12338.0 | 14726.0 | 15821.0 | 13398.0 |
| N039 | chr19 | 18573748 | 18574869 | FALSE | ALL_ZERO | 13536.4 | NA | NA | NA | NA | NA | 15362.0 | 12544.0 | 11495.0 | 13274.0 | 16582.0 | 12360.0 |
| N040 | chr19 | 18574972 | 18575056 | FALSE | ALL_ZERO | 11100.4 | NA | NA | NA | NA | NA | 12384.0 | 10188.0 | 9727.0 | 10019.0 | 14724.0 | 9762.0 |
| N041 | chr19 | 18588900 | 18588994 | TRUE | OK | 419.6 | 0.00166 | 1.305e-22 | 6.237e-19 | 0.917 | 0.458 | 485.0 | 384.0 | 363.0 | 388.0 | 515.0 | 395.0 |
| N042 | chr19 | 18589077 | 18589412 | TRUE | OK | 239.2 | 0.00175 | 3.473e-16 | 8.725e-13 | 0.872 | 0.436 | 280.0 | 213.0 | 202.0 | 223.0 | 295.0 | 230.0 |
| N043 | chr19 | 18589077 | 18589478 | TRUE | OK | 109.8 | 0.00236 | 8.208e-14 | 1.497e-10 | 1.052 | 0.526 | 120.0 | 79.0 | 94.0 | 115.0 | 141.0 | 112.0 |
| N044 | chr19 | 18589077 | 18590853 | TRUE | OK | 32.7 | 0.0103 | 2.991e-05 | 0.005891 | 1.134 | 0.567 | 27.0 | 35.0 | 21.0 | 34.0 | 50.0 | 29.0 |
| N045 | chr19 | 18589683 | 18590853 | TRUE | OK | 515.6 | 0.0263 | 9.807e-05 | 0.01513 | 1.151 | 0.575 | 573.0 | 486.0 | 384.0 | 470.0 | 785.0 | 408.0 |
| N046 | chr19 | 18590933 | 18592107 | TRUE | OK | 484.0 | 0.025 | 1.201e-05 | 0.002839 | 1.247 | 0.623 | 538.0 | 445.0 | 329.0 | 449.0 | 746.0 | 411.0 |
| N047 | chr19 | 18593872 | 18594064 | TRUE | OK | 13.9 | 0.0267 | 0.04388 | 0.5137 | -0.927 | -0.464 | 23.0 | 13.0 | 27.0 | 9.0 | 6.0 | 6.0 |
| N048 | chr19 | 18594112 | 18594246 | TRUE | OK | 65.9 | 0.0268 | 0.4408 | 0.8263 | -0.248 | -0.124 | 118.0 | 92.0 | 56.0 | 33.0 | 50.0 | 56.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000006016.11 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |