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Normalized Counts Table (ENSG00000129255.16)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr17	7583528	7583665	TRUE	OK	53.3	0.00609	0.0164	0.3584	-0.503	-0.251	63.1	56.4	56.5	57.3	45.0	41.4
E002	chr17	7583665	7583820	TRUE	OK	61.8	0.0178	0.1085	0.6463	-0.423	-0.211	58.0	65.3	76.5	75.1	51.3	44.4
E003	chr17	7583820	7583827	TRUE	OK	45.0	0.0199	0.2118	0.7304	-0.358	-0.179	40.1	51.5	51.0	57.3	36.7	33.3
E004	chr17	7583827	7583847	TRUE	OK	97.9	0.0108	0.2938	0.7687	-0.216	-0.108	95.5	101.9	97.6	120.6	92.2	79.7
E005	chr17	7583847	7583848	TRUE	OK	96.7	0.0111	0.3103	0.7754	-0.212	-0.106	94.7	101.0	95.3	119.6	90.1	79.7
E006	chr17	7583848	7583851	TRUE	OK	105.2	0.0103	0.2527	0.7506	-0.232	-0.116	107.5	109.9	100.9	127.5	98.5	86.7
E007	chr17	7583851	7583852	TRUE	OK	104.8	0.0105	0.2566	0.7519	-0.232	-0.116	108.3	107.9	100.9	127.5	97.4	86.7
E008	chr17	7583852	7583859	TRUE	OK	118.1	0.00944	0.4179	0.8175	-0.158	-0.079	117.7	117.8	113.1	144.3	111.0	104.9
E009	chr17	7583859	7583861	TRUE	OK	119.0	0.00878	0.3925	0.807	-0.164	-0.082	121.1	119.8	110.9	143.3	113.1	105.9
E010	chr17	7583861	7583864	TRUE	OK	131.4	0.0114	0.4134	0.8157	-0.167	-0.083	133.9	131.6	123.0	162.1	120.5	117.0
E011	chr17	7583864	7583869	TRUE	OK	235.0	0.0109	0.5118	0.8522	-0.124	-0.062	242.2	224.7	217.3	288.6	225.2	211.8
E012	chr17	7583869	7583873	TRUE	OK	294.2	0.0112	0.4282	0.8213	-0.151	-0.076	312.2	277.1	274.9	353.8	276.5	270.3
E013	chr17	7583873	7583874	TRUE	OK	328.5	0.0124	0.5233	0.8563	-0.127	-0.064	350.6	303.9	302.6	398.3	306.9	308.7
E014	chr17	7583874	7583884	TRUE	OK	454.9	0.0123	0.5512	0.8661	-0.122	-0.061	492.2	422.6	406.8	534.7	427.4	445.8
E015	chr17	7583884	7583892	TRUE	OK	555.7	0.011	0.6837	0.9122	-0.082	-0.041	578.3	525.6	488.9	632.5	529.0	580.0
E016	chr17	7583892	7583894	TRUE	OK	568.0	0.011	0.7207	0.924	-0.073	-0.037	588.6	534.5	500.0	649.3	541.6	594.1
E017	chr17	7583894	7583965	TRUE	OK	864.8	0.0107	0.5104	0.8517	-0.125	-0.062	889.6	818.6	800.4	958.6	816.0	905.8
E018	chr17	7583965	7584256	TRUE	OK	64.7	0.00518	0.6879	0.9135	-0.080	-0.040	58.0	54.4	74.3	73.1	68.1	60.5
E019	chr17	7585694	7585731	TRUE	OK	13.9	0.0138	0.2609	0.7538	0.415	0.208	11.1	11.9	10.0	17.8	12.6	20.2
E020	chr17	7585731	7585797	TRUE	OK	1094.3	0.0072	0.597	0.8824	-0.087	-0.043	1101.2	1023.5	1008.8	1154.3	1106.2	1172.1
E021	chr17	7585945	7585950	TRUE	OK	862.6	0.00661	0.7097	0.9203	-0.062	-0.031	882.0	800.8	770.4	886.5	895.6	940.1
E022	chr17	7585950	7586078	TRUE	OK	1420.5	0.00776	0.454	0.8306	-0.124	-0.062	1456.0	1320.4	1325.8	1521.0	1434.1	1465.6
E023	chr17	7586078	7586180	TRUE	OK	12.8	0.0134	0.1289	0.6687	-0.588	-0.294	14.5	18.8	10.0	10.9	10.5	12.1
E024	chr17	7586180	7586214	TRUE	OK	7.1	0.0241	0.8987	0.9755	-0.068	-0.034	8.5	6.9	4.4	4.0	8.4	10.1
E025	chr17	7586214	7586374	TRUE	OK	9.8	0.0288	0.9515	0.9892	-0.032	-0.016	13.6	6.9	6.7	6.9	15.7	9.1
E026	chr17	7586374	7586438	TRUE	OK	7.4	0.0869	0.8859	0.9722	-0.049	-0.024	11.1	4.0	5.5	5.9	14.7	3.0
E027	chr17	7586438	7586468	TRUE	OK	8.5	0.0812	0.6147	0.8887	-0.225	-0.113	11.9	7.9	5.5	5.9	16.8	3.0
E028	chr17	7586468	7586488	TRUE	OK	9.7	0.0557	0.3398	0.7869	-0.467	-0.234	12.8	11.9	6.7	4.9	16.8	5.0
E029	chr17	7586488	7586655	TRUE	OK	19.6	0.0299	0.6149	0.8887	-0.201	-0.101	21.3	25.7	11.1	12.8	27.2	19.2
E030	chr17	7586655	7586691	TRUE	OK	83.2	0.00318	0.07532	0.5943	0.285	0.142	63.1	67.3	78.7	97.8	101.6	90.8
E031	chr17	7586691	7586746	TRUE	OK	1232.0	0.00615	0.2919	0.7677	-0.153	-0.077	1279.5	1122.4	1190.6	1306.5	1259.1	1233.6
E032	chr17	7586746	7586777	TRUE	OK	1023.4	0.00615	0.4816	0.8411	-0.106	-0.053	1073.9	918.5	955.6	1093.0	1065.3	1033.9
E033	chr17	7586777	7586838	TRUE	OK	214.9	0.00692	0.006983	0.241	-0.448	-0.224	277.2	211.8	205.1	189.8	216.8	188.6
E034	chr17	7586838	7586898	TRUE	OK	40.7	0.00773	0.01205	0.3129	0.596	0.298	29.0	33.7	26.6	46.4	49.2	59.5
E035	chr17	7586898	7586961	TRUE	OK	971.4	0.00646	0.6929	0.915	-0.063	-0.032	963.0	857.2	943.4	1090.1	1004.6	970.4
E036	chr17	7586961	7587017	TRUE	OK	939.7	0.0014	0.1627	0.6981	0.103	0.051	879.4	789.9	866.9	1007.1	1148.1	947.2
E037	chr17	7587017	7587043	TRUE	OK	8.7	0.0324	0.6009	0.8837	0.247	0.123	10.2	4.9	6.7	12.8	6.3	11.1
E038	chr17	7587043	7587160	TRUE	OK	134.3	0.00329	0.004848	0.1995	0.392	0.196	119.4	104.9	96.4	167.0	170.7	147.3
E039	chr17	7587160	7587169	TRUE	OK	1042.7	0.00237	0.6307	0.8944	-0.046	-0.023	1049.2	904.7	994.4	1076.2	1235.0	996.6
E040	chr17	7587169	7587201	TRUE	OK	1268.0	0.00226	0.4664	0.8355	-0.067	-0.033	1271.8	1105.6	1228.3	1295.6	1482.2	1224.6
E041	chr17	7587201	7587243	TRUE	OK	1398.4	0.00243	0.6151	0.8888	-0.047	-0.024	1375.8	1209.5	1367.9	1449.8	1651.9	1335.5
E042	chr17	7587243	7587258	TRUE	OK	1321.7	0.00272	0.5604	0.8697	-0.056	-0.028	1308.5	1145.2	1292.6	1373.7	1572.3	1237.7
E043	chr17	7587258	7587271	TRUE	OK	1258.6	0.00328	0.7778	0.9414	-0.030	-0.015	1247.9	1060.1	1233.8	1296.6	1520.0	1193.3
E044	chr17	7587425	7587474	TRUE	OK	1412.1	0.00354	0.6274	0.8932	-0.055	-0.027	1420.2	1200.6	1379.0	1466.6	1661.4	1344.6
E045	chr17	7587474	7587542	TRUE	OK	1466.7	0.0033	0.2522	0.7504	-0.122	-0.061	1470.5	1302.6	1458.8	1543.7	1638.3	1386.0
E046	chr17	7587542	7587595	TRUE	OK	1299.8	0.00275	0.3986	0.8095	-0.085	-0.042	1320.4	1167.0	1227.2	1359.9	1471.8	1252.8
E047	chr17	7587595	7587643	TRUE	OK	1294.4	0.000863	0.7896	0.9447	-0.017	-0.009	1243.6	1179.8	1203.9	1330.2	1540.9	1267.9
E048	chr17	7587643	7587681	TRUE	OK	1236.2	0.00136	0.281	0.7631	0.080	0.040	1083.3	1156.1	1127.4	1273.9	1566.0	1210.4
E049	chr17	7587681	7587685	TRUE	OK	985.1	0.00277	0.2875	0.7657	0.110	0.055	837.6	924.5	892.4	968.5	1303.1	984.5
E050	chr17	7587685	7587696	TRUE	OK	1038.0	0.00359	0.2268	0.7388	0.138	0.069	867.5	979.9	925.6	1022.9	1392.2	1040.0
E051	chr17	7587696	7587790	TRUE	OK	1383.3	0.00367	0.2845	0.7645	0.122	0.061	1166.9	1326.3	1231.6	1386.6	1821.6	1366.8
E052	chr17	7587790	7587817	TRUE	OK	1100.0	0.00398	0.2182	0.7344	0.146	0.073	911.0	1051.2	971.1	1128.6	1469.7	1068.2
E053	chr17	7587817	7587938	TRUE	OK	1283.0	0.00953	0.06287	0.5669	0.339	0.169	1061.9	1129.4	1034.3	1302.6	1947.3	1222.5
E054	chr17	7587938	7587955	TRUE	OK	543.2	0.019	0.01111	0.302	0.654	0.327	447.8	382.1	358.1	553.4	992.0	525.5
E055	chr17	7587955	7588094	TRUE	OK	571.1	0.0197	0.01139	0.3051	0.663	0.331	475.1	391.0	380.2	584.1	1046.5	549.7
E056	chr17	7588094	7588176	TRUE	OK	161.1	0.0228	0.1227	0.663	0.475	0.237	146.7	110.9	115.3	159.1	296.4	138.2
E057	chr17	7588176	7588177	TRUE	OK	19.2	0.00878	0.4034	0.8117	0.262	0.131	17.9	16.8	13.3	22.7	28.3	16.1
E058	chr17	7588177	7588187	TRUE	OK	60.8	0.00439	0.0005352	0.05197	-0.655	-0.327	65.7	81.2	63.2	46.4	57.6	50.4
E059	chr17	7588187	7588212	TRUE	OK	97.8	0.00752	0.003113	0.1558	-0.566	-0.283	104.1	130.7	94.2	89.9	86.9	80.7
E060	chr17	7592443	7592494	TRUE	OK	21.6	0.0167	0.3542	0.7929	-0.310	-0.155	17.1	20.8	29.9	25.7	21.0	15.1
E061	chr17	7592494	7592789	TRUE	OK	637.9	0.00152	0.01618	0.3568	-0.200	-0.100	646.6	611.7	639.6	630.5	678.8	620.4
J062	chr17	7583965	7585694	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.249	0.942	NA	NA	NA	0.0	0.0	1.1	1.0	0.0	0.0
J063	chr17	7583965	7585731	TRUE	OK	787.4	0.0114	0.5954	0.8819	-0.106	-0.053	818.0	744.3	709.5	863.8	744.8	844.3
J064	chr17	7583965	7586691	TRUE	OK	3.7	0.0252	0.4424	0.8269	-0.517	-0.258	6.0	3.0	3.3	4.0	3.1	3.0
J065	chr17	7585797	7585945	TRUE	OK	841.6	0.00611	0.679	0.9106	-0.066	-0.033	859.8	781.9	754.9	871.7	873.6	907.8
J066	chr17	7585797	7585950	TRUE	OK	22.0	0.0154	0.6015	0.8839	-0.173	-0.087	17.9	16.8	31.0	24.7	25.1	16.1
J067	chr17	7585797	7586691	TRUE	OK	12.9	0.0525	0.5005	0.8479	0.375	0.187	10.2	9.9	11.1	22.7	7.3	16.1
J068	chr17	7586078	7586655	TRUE	OK	41.9	0.00912	0.6778	0.9103	-0.105	-0.053	32.4	35.6	54.3	44.5	47.1	37.3
J069	chr17	7586078	7586691	TRUE	OK	913.7	0.00511	0.1543	0.6919	-0.188	-0.094	961.3	863.1	875.7	962.6	925.0	894.7
J070	chr17	7586078	7586898	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.0574	0.1259	NA	NA	NA	3.4	1.0	3.3	2.0	0.0	1.0
J071	chr17	7586078	7587160	TRUE	OK	5.1	0.0858	0.7072	0.9196	0.343	0.171	5.1	4.9	2.2	6.9	10.5	1.0
J072	chr17	7586214	7586374	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J073	chr17	7586746	7588094	TRUE	OK	4.7	0.0257	0.2541	0.7512	0.703	0.351	1.7	4.9	3.3	5.9	4.2	8.1
J074	chr17	7586777	7586898	TRUE	OK	724.4	0.00579	0.9636	0.9921	-0.015	-0.007	725.9	631.5	672.9	806.4	758.4	751.5
J075	chr17	7586777	7587160	TRUE	OK	31.6	0.00515	0.01379	0.3332	-0.600	-0.300	35.0	39.6	33.3	32.6	24.1	25.2
J076	chr17	7586838	7587160	TRUE	OK	142.2	0.00666	0.0005284	0.05147	-0.600	-0.300	193.6	142.5	145.2	119.6	135.1	117.0
J077	chr17	7587017	7587160	TRUE	OK	687.8	0.00113	0.8825	0.9713	0.010	0.005	655.9	589.9	666.2	718.5	832.8	663.7
J078	chr17	7587017	7587169	TRUE	OK	5.6	0.0176	0.3929	0.8071	0.476	0.238	2.6	4.0	6.7	5.9	8.4	6.1
J079	chr17	7587271	7587425	TRUE	OK	1180.3	0.00331	0.7632	0.9369	-0.034	-0.017	1174.5	985.8	1165.1	1219.5	1412.1	1124.7
J080	chr17	7587271	7592443	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
N081	chr17	7582531	7583917	TRUE	OK	10.0	0.0119	0.4145	0.8161	0.344	0.172	8.5	5.9	10.0	13.8	14.7	7.1
N082	chr17	7588546	7589143	TRUE	OK	783.4	0.000655	2.445e-27	1.558e-23	-0.676	-0.338	909.3	851.2	901.2	657.2	751.1	630.4
N083	chr17	7589738	7589986	TRUE	OK	43.5	0.00322	0.1287	0.6685	-0.308	-0.154	46.9	40.6	47.7	43.5	48.2	34.3
N084	chr17	7591925	7592070	TRUE	OK	19.1	0.0117	0.5619	0.8703	-0.186	-0.093	23.9	15.8	16.6	19.8	26.2	12.1
N085	chr17	7591925	7592253	TRUE	OK	288.2	0.00433	0.6555	0.9027	-0.045	-0.023	280.6	270.2	264.9	276.7	389.7	247.1
N086	chr17	7592157	7592253	TRUE	OK	31.6	0.00778	0.4738	0.838	0.178	0.089	29.0	25.7	27.7	34.6	30.4	42.4
N087	chr17	7592354	7592503	TRUE	OK	394.4	0.00183	0.2111	0.7299	-0.122	-0.061	387.2	394.9	363.6	384.4	428.4	407.5
N088	chr17	7592599	7592693	TRUE	OK	301.6	0.00563	0.08475	0.6114	-0.256	-0.128	334.4	301.9	280.5	302.4	290.2	300.6

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000129255.16
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE