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Normalized Counts Table (ENSG00000111640.15)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr12	6534511	6534516	TRUE	OK	224.3	0.00581	0.7227	0.9246	-0.056	-0.028	222.6	179.2	200.6	273.8	228.4	241.1
E002	chr12	6534516	6534531	TRUE	OK	1231.5	0.00561	0.7709	0.9393	0.037	0.019	1078.2	1120.5	994.4	1513.1	1302.1	1380.9
E003	chr12	6534531	6534532	TRUE	OK	1255.7	0.00521	0.7476	0.9321	0.040	0.020	1095.2	1131.3	1025.4	1543.7	1329.3	1409.2
E004	chr12	6534532	6534533	TRUE	OK	4224.1	0.00489	0.3108	0.7756	-0.119	-0.059	3997.9	3707.8	3918.7	4829.7	4185.9	4704.6
E005	chr12	6534533	6534540	TRUE	OK	7256.3	0.00599	0.4083	0.8135	-0.105	-0.053	6853.6	6409.0	6598.0	8407.3	7098.0	8171.5
E006	chr12	6534540	6534569	TRUE	OK	27456.8	0.00753	0.5148	0.8533	-0.092	-0.046	25683.0	24273.0	24640.7	32643.0	26708.7	30792.7
E007	chr12	6534569	6534661	TRUE	OK	205.1	0.00353	0.01177	0.3098	0.326	0.163	173.2	147.5	150.8	274.7	251.4	233.0
E008	chr12	6534753	6534791	TRUE	OK	143.0	0.00474	0.5179	0.8543	-0.098	-0.049	135.6	129.7	125.3	171.0	139.3	157.4
E009	chr12	6534791	6534809	TRUE	OK	597.8	0.00612	0.00168	0.1087	0.441	0.220	411.1	457.3	443.4	763.0	687.2	825.1
E010	chr12	6534809	6534861	TRUE	OK	48313.4	0.00807	0.5039	0.8492	-0.099	-0.050	45302.2	42706.1	43229.9	57277.0	47383.7	53981.7
E011	chr12	6534861	6534991	TRUE	OK	211.4	0.0148	0.004702	0.196	0.613	0.307	170.6	142.5	114.2	271.8	249.3	319.8
E012	chr12	6534991	6535141	TRUE	OK	205.5	0.0222	0.004141	0.1827	0.733	0.367	173.2	119.8	99.8	274.7	244.1	321.8
E013	chr12	6535301	6535469	TRUE	OK	276.9	0.0145	0.006067	0.2241	0.598	0.299	204.7	184.1	176.3	388.4	289.1	418.6
E014	chr12	6536493	6536593	TRUE	OK	68638.2	0.00924	0.2259	0.7383	-0.194	-0.097	64552.9	62154.7	64404.1	79849.4	65392.8	75475.1
E015	chr12	6536604	6536607	TRUE	OK	54.6	0.0111	0.02641	0.4318	0.527	0.263	47.8	37.6	28.8	81.0	66.0	66.6
E016	chr12	6536683	6536790	TRUE	OK	81292.2	0.00906	0.1842	0.7136	-0.212	-0.106	77515.5	73072.2	76160.2	94518.5	78537.1	87949.8
E017	chr12	6536790	6536817	TRUE	OK	671.9	0.0106	0.2106	0.7297	0.227	0.113	484.5	573.1	557.6	860.8	677.7	877.6
E018	chr12	6536817	6536919	TRUE	OK	365.1	0.0148	3.3e-15	7.217e-12	1.728	0.864	142.4	153.4	121.9	682.9	480.8	609.3
E019	chr12	6536919	6537010	TRUE	OK	65194.6	0.00568	0.2859	0.765	-0.136	-0.068	62548.4	57295.8	58794.9	75619.5	67191.4	69717.5
E020	chr12	6537010	6537100	TRUE	OK	1335.9	0.00376	2.478e-23	1.267e-19	1.079	0.539	671.3	713.6	787.1	2043.8	1848.9	1950.8
E021	chr12	6537100	6537216	TRUE	OK	76200.5	0.00434	0.4288	0.8216	-0.089	-0.045	72175.0	64984.6	68530.1	88508.7	82424.5	80580.2
E022	chr12	6537216	6537308	TRUE	OK	1254.0	0.00327	4.216e-17	1.181e-13	0.857	0.428	710.5	735.4	828.1	1873.8	1695.9	1680.5
E023	chr12	6537308	6537390	TRUE	OK	79619.1	0.00226	0.5326	0.8596	-0.051	-0.026	73849.4	67113.6	71603.0	90552.5	90409.8	84186.3
E024	chr12	6537390	6537583	TRUE	OK	1204.6	0.00443	8.682e-12	1.091e-08	0.794	0.397	649.1	805.7	795.9	1733.5	1671.8	1571.6
E025	chr12	6537583	6537798	TRUE	OK	130038.3	0.00189	0.62	0.8904	-0.035	-0.018	118433.4	109206.0	117174.1	145395.3	154564.4	135456.6
E026	chr12	6537798	6537996	TRUE	OK	133629.6	0.00325	0.6704	0.9078	0.046	0.023	117093.3	111320.2	119742.6	144797.4	170430.2	138394.0
E027	chr12	6538100	6538314	TRUE	OK	73132.4	0.00585	0.3927	0.807	0.123	0.061	62922.8	60019.7	62596.1	77889.6	100893.4	74472.5
E028	chr12	6538314	6538315	TRUE	OK	10198.1	0.0147	0.06212	0.5651	0.425	0.212	7687.0	7407.7	7552.5	10235.7	17617.3	10688.2
E029	chr12	6538315	6538317	TRUE	OK	10039.3	0.0147	0.0602	0.5605	0.427	0.214	7563.3	7274.1	7433.9	10081.5	17350.2	10532.9
E030	chr12	6538317	6538337	TRUE	OK	9638.2	0.0148	0.06038	0.5607	0.428	0.214	7298.0	6971.2	7098.0	9652.6	16668.2	10141.5
E031	chr12	6538337	6538339	TRUE	OK	6022.6	0.0109	0.0611	0.5626	0.359	0.179	4786.9	4535.3	4397.6	6278.6	9823.7	6313.5
E032	chr12	6538339	6538340	TRUE	OK	4764.7	0.00922	0.09978	0.6349	0.289	0.144	3949.3	3734.5	3486.4	5088.7	7422.8	4906.3
E033	chr12	6538340	6538359	TRUE	OK	4704.1	0.00936	0.1103	0.649	0.283	0.141	3920.3	3693.0	3442.0	5017.5	7322.2	4829.7
E034	chr12	6538359	6538371	TRUE	OK	1480.3	0.0115	0.1769	0.7083	0.269	0.134	1290.5	1152.1	1050.9	1568.4	2329.7	1489.9
E035	chr12	6538371	6538374	TRUE	OK	6.2	0.0236	0.6787	0.9105	-0.219	-0.110	4.3	7.9	5.5	4.0	8.4	7.1
J036	chr12	6534569	6534809	TRUE	OK	27362.0	0.00756	0.5108	0.8519	-0.093	-0.046	25596.8	24200.7	24568.6	32531.3	26582.0	30692.8
J037	chr12	6534661	6534809	TRUE	OK	198.0	0.00291	0.009503	0.2811	0.320	0.160	168.0	140.6	147.4	263.9	247.2	220.9
J038	chr12	6534861	6536493	TRUE	OK	48151.5	0.00808	0.4963	0.8462	-0.101	-0.050	45171.7	42585.3	43120.1	57088.2	47189.9	53753.8
J039	chr12	6534991	6536493	TRUE	OK	3.8	0.235	0.7984	0.9474	-0.355	-0.177	0.0	4.9	6.7	5.9	4.2	1.0
J040	chr12	6535469	6536493	TRUE	OK	44.2	0.0152	0.4992	0.8473	0.185	0.093	39.2	27.7	41.0	48.4	42.9	65.6
J041	chr12	6536593	6536683	TRUE	OK	57785.8	0.00911	0.08501	0.612	-0.273	-0.136	56021.4	52970.3	56133.3	66162.6	53494.0	61933.3
J042	chr12	6536607	6536683	TRUE	OK	6.4	0.0637	0.1202	0.6606	1.060	0.530	5.1	3.0	2.2	14.8	9.4	4.0
J043	chr12	6536790	6536919	TRUE	OK	45893.0	0.0084	0.1719	0.7048	-0.208	-0.104	45299.6	41895.4	41845.3	53824.9	43924.8	48568.0
J044	chr12	6536817	6536919	FALSE	LOW_COUNTS_INDEP_FILTER	0.9	0.325	0.9543	NA	NA	NA	2.6	0.0	0.0	2.0	1.0	0.0
J045	chr12	6537010	6537100	TRUE	OK	40777.2	0.00211	0.3637	0.7963	-0.072	-0.036	38505.7	34715.4	36675.0	46037.2	45167.2	43562.8
J046	chr12	6537216	6537308	TRUE	OK	53855.1	0.00445	0.3538	0.7928	-0.105	-0.053	52075.6	46018.9	48371.3	62806.4	57599.2	56259.4
J047	chr12	6537390	6537583	TRUE	OK	59837.5	0.00129	0.1523	0.6904	-0.087	-0.044	55656.4	51042.2	55024.8	66970.1	67945.6	62386.2
J048	chr12	6537996	6538100	TRUE	OK	55693.8	0.00291	0.8767	0.9696	-0.006	-0.003	50010.6	47529.4	49274.7	59600.4	71999.5	55748.0
N049	chr12	6537985	6538140	TRUE	OK	1097.6	0.00603	0.1818	0.7121	0.182	0.091	1008.2	863.1	811.5	1219.5	1528.3	1155.0

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000111640.15
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE