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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr12 | 6534511 | 6534516 | TRUE | OK | 224.3 | 0.00581 | 0.7227 | 0.9246 | -0.056 | -0.028 | 261.0 | 181.0 | 181.0 | 277.0 | 218.0 | 239.0 |
| E002 | chr12 | 6534516 | 6534531 | TRUE | OK | 1231.5 | 0.00561 | 0.7709 | 0.9393 | 0.037 | 0.019 | 1264.0 | 1132.0 | 897.0 | 1531.0 | 1243.0 | 1369.0 |
| E003 | chr12 | 6534531 | 6534532 | TRUE | OK | 1255.7 | 0.00521 | 0.7476 | 0.9321 | 0.040 | 0.020 | 1284.0 | 1143.0 | 925.0 | 1562.0 | 1269.0 | 1397.0 |
| E004 | chr12 | 6534532 | 6534533 | TRUE | OK | 4224.1 | 0.00489 | 0.3108 | 0.7756 | -0.119 | -0.059 | 4687.0 | 3746.0 | 3535.0 | 4887.0 | 3996.0 | 4664.0 |
| E005 | chr12 | 6534533 | 6534540 | TRUE | OK | 7256.3 | 0.00599 | 0.4083 | 0.8135 | -0.105 | -0.053 | 8035.0 | 6475.0 | 5952.0 | 8507.0 | 6776.0 | 8101.0 |
| E006 | chr12 | 6534540 | 6534569 | TRUE | OK | 27456.8 | 0.00753 | 0.5148 | 0.8533 | -0.092 | -0.046 | 30110.0 | 24523.0 | 22228.0 | 33030.0 | 25497.0 | 30527.0 |
| E007 | chr12 | 6534569 | 6534661 | TRUE | OK | 205.1 | 0.00353 | 0.01177 | 0.3098 | 0.326 | 0.163 | 203.0 | 149.0 | 136.0 | 278.0 | 240.0 | 231.0 |
| E008 | chr12 | 6534753 | 6534791 | TRUE | OK | 143.0 | 0.00474 | 0.5179 | 0.8543 | -0.098 | -0.049 | 159.0 | 131.0 | 113.0 | 173.0 | 133.0 | 156.0 |
| E009 | chr12 | 6534791 | 6534809 | TRUE | OK | 597.8 | 0.00612 | 0.00168 | 0.1087 | 0.441 | 0.220 | 482.0 | 462.0 | 400.0 | 772.0 | 656.0 | 818.0 |
| E010 | chr12 | 6534809 | 6534861 | TRUE | OK | 48313.4 | 0.00807 | 0.5039 | 0.8492 | -0.099 | -0.050 | 53111.0 | 43146.0 | 38997.0 | 57956.0 | 45234.0 | 53516.0 |
| E011 | chr12 | 6534861 | 6534991 | TRUE | OK | 211.4 | 0.0148 | 0.004702 | 0.196 | 0.613 | 0.307 | 200.0 | 144.0 | 103.0 | 275.0 | 238.0 | 317.0 |
| E012 | chr12 | 6534991 | 6535141 | TRUE | OK | 205.5 | 0.0222 | 0.004141 | 0.1827 | 0.733 | 0.367 | 203.0 | 121.0 | 90.0 | 278.0 | 233.0 | 319.0 |
| E013 | chr12 | 6535301 | 6535469 | TRUE | OK | 276.9 | 0.0145 | 0.006067 | 0.2241 | 0.598 | 0.299 | 240.0 | 186.0 | 159.0 | 393.0 | 276.0 | 415.0 |
| E014 | chr12 | 6536493 | 6536593 | TRUE | OK | 68638.2 | 0.00924 | 0.2259 | 0.7383 | -0.194 | -0.097 | 75680.0 | 62795.0 | 58098.0 | 80796.0 | 62426.0 | 74824.0 |
| E015 | chr12 | 6536604 | 6536607 | TRUE | OK | 54.6 | 0.0111 | 0.02641 | 0.4318 | 0.527 | 0.263 | 56.0 | 38.0 | 26.0 | 82.0 | 63.0 | 66.0 |
| E016 | chr12 | 6536683 | 6536790 | TRUE | OK | 81292.2 | 0.00906 | 0.1842 | 0.7136 | -0.212 | -0.106 | 90877.0 | 73825.0 | 68703.0 | 95639.0 | 74974.0 | 87191.0 |
| E017 | chr12 | 6536790 | 6536817 | TRUE | OK | 671.9 | 0.0106 | 0.2106 | 0.7297 | 0.227 | 0.113 | 568.0 | 579.0 | 503.0 | 871.0 | 647.0 | 870.0 |
| E018 | chr12 | 6536817 | 6536919 | TRUE | OK | 365.1 | 0.0148 | 3.3e-15 | 7.217e-12 | 1.728 | 0.864 | 167.0 | 155.0 | 110.0 | 691.0 | 459.0 | 604.0 |
| E019 | chr12 | 6536919 | 6537010 | TRUE | OK | 65194.6 | 0.00568 | 0.2859 | 0.765 | -0.136 | -0.068 | 73330.0 | 57886.0 | 53038.0 | 76516.0 | 64143.0 | 69116.0 |
| E020 | chr12 | 6537010 | 6537100 | TRUE | OK | 1335.9 | 0.00376 | 2.478e-23 | 1.267e-19 | 1.079 | 0.539 | 787.0 | 721.0 | 710.0 | 2068.0 | 1765.0 | 1934.0 |
| E021 | chr12 | 6537100 | 6537216 | TRUE | OK | 76200.5 | 0.00434 | 0.4288 | 0.8216 | -0.089 | -0.045 | 84616.0 | 65654.0 | 61820.0 | 89558.0 | 78685.0 | 79885.0 |
| E022 | chr12 | 6537216 | 6537308 | TRUE | OK | 1254.0 | 0.00327 | 4.216e-17 | 1.181e-13 | 0.857 | 0.428 | 833.0 | 743.0 | 747.0 | 1896.0 | 1619.0 | 1666.0 |
| E023 | chr12 | 6537308 | 6537390 | TRUE | OK | 79619.1 | 0.00226 | 0.5326 | 0.8596 | -0.051 | -0.026 | 86579.0 | 67805.0 | 64592.0 | 91626.0 | 86308.0 | 83460.0 |
| E024 | chr12 | 6537390 | 6537583 | TRUE | OK | 1204.6 | 0.00443 | 8.682e-12 | 1.091e-08 | 0.794 | 0.397 | 761.0 | 814.0 | 718.0 | 1754.0 | 1596.0 | 1558.0 |
| E025 | chr12 | 6537583 | 6537798 | TRUE | OK | 130038.3 | 0.00189 | 0.62 | 0.8904 | -0.035 | -0.018 | 138848.0 | 110331.0 | 105701.0 | 147119.0 | 147552.0 | 134288.0 |
| E026 | chr12 | 6537798 | 6537996 | TRUE | OK | 133629.6 | 0.00325 | 0.6704 | 0.9078 | 0.046 | 0.023 | 137277.0 | 112467.0 | 108018.0 | 146514.0 | 162698.0 | 137200.0 |
| E027 | chr12 | 6538100 | 6538314 | TRUE | OK | 73132.4 | 0.00585 | 0.3927 | 0.807 | 0.123 | 0.061 | 73769.0 | 60638.0 | 56467.0 | 78813.0 | 96316.0 | 73830.0 |
| E028 | chr12 | 6538314 | 6538315 | TRUE | OK | 10198.1 | 0.0147 | 0.06212 | 0.5651 | 0.425 | 0.212 | 9012.0 | 7484.0 | 6813.0 | 10357.0 | 16818.0 | 10596.0 |
| E029 | chr12 | 6538315 | 6538317 | TRUE | OK | 10039.3 | 0.0147 | 0.0602 | 0.5605 | 0.427 | 0.214 | 8867.0 | 7349.0 | 6706.0 | 10201.0 | 16563.0 | 10442.0 |
| E030 | chr12 | 6538317 | 6538337 | TRUE | OK | 9638.2 | 0.0148 | 0.06038 | 0.5607 | 0.428 | 0.214 | 8556.0 | 7043.0 | 6403.0 | 9767.0 | 15912.0 | 10054.0 |
| E031 | chr12 | 6538337 | 6538339 | TRUE | OK | 6022.6 | 0.0109 | 0.0611 | 0.5626 | 0.359 | 0.179 | 5612.0 | 4582.0 | 3967.0 | 6353.0 | 9378.0 | 6259.0 |
| E032 | chr12 | 6538339 | 6538340 | TRUE | OK | 4764.7 | 0.00922 | 0.09978 | 0.6349 | 0.289 | 0.144 | 4630.0 | 3773.0 | 3145.0 | 5149.0 | 7086.0 | 4864.0 |
| E033 | chr12 | 6538340 | 6538359 | TRUE | OK | 4704.1 | 0.00936 | 0.1103 | 0.649 | 0.283 | 0.141 | 4596.0 | 3731.0 | 3105.0 | 5077.0 | 6990.0 | 4788.0 |
| E034 | chr12 | 6538359 | 6538371 | TRUE | OK | 1480.3 | 0.0115 | 0.1769 | 0.7083 | 0.269 | 0.134 | 1513.0 | 1164.0 | 948.0 | 1587.0 | 2224.0 | 1477.0 |
| E035 | chr12 | 6538371 | 6538374 | TRUE | OK | 6.2 | 0.0236 | 0.6787 | 0.9105 | -0.219 | -0.110 | 5.0 | 8.0 | 5.0 | 4.0 | 8.0 | 7.0 |
| J036 | chr12 | 6534569 | 6534809 | TRUE | OK | 27362.0 | 0.00756 | 0.5108 | 0.8519 | -0.093 | -0.046 | 30009.0 | 24450.0 | 22163.0 | 32917.0 | 25376.0 | 30428.0 |
| J037 | chr12 | 6534661 | 6534809 | TRUE | OK | 198.0 | 0.00291 | 0.009503 | 0.2811 | 0.320 | 0.160 | 197.0 | 142.0 | 133.0 | 267.0 | 236.0 | 219.0 |
| J038 | chr12 | 6534861 | 6536493 | TRUE | OK | 48151.5 | 0.00808 | 0.4963 | 0.8462 | -0.101 | -0.050 | 52958.0 | 43024.0 | 38898.0 | 57765.0 | 45049.0 | 53290.0 |
| J039 | chr12 | 6534991 | 6536493 | TRUE | OK | 3.8 | 0.235 | 0.7984 | 0.9474 | -0.355 | -0.177 | 0.0 | 5.0 | 6.0 | 6.0 | 4.0 | 1.0 |
| J040 | chr12 | 6535469 | 6536493 | TRUE | OK | 44.2 | 0.0152 | 0.4992 | 0.8473 | 0.185 | 0.093 | 46.0 | 28.0 | 37.0 | 49.0 | 41.0 | 65.0 |
| J041 | chr12 | 6536593 | 6536683 | TRUE | OK | 57785.8 | 0.00911 | 0.08501 | 0.612 | -0.273 | -0.136 | 65678.0 | 53516.0 | 50637.0 | 66947.0 | 51067.0 | 61399.0 |
| J042 | chr12 | 6536607 | 6536683 | TRUE | OK | 6.4 | 0.0637 | 0.1202 | 0.6606 | 1.060 | 0.530 | 6.0 | 3.0 | 2.0 | 15.0 | 9.0 | 4.0 |
| J043 | chr12 | 6536790 | 6536919 | TRUE | OK | 45893.0 | 0.0084 | 0.1719 | 0.7048 | -0.208 | -0.104 | 53108.0 | 42327.0 | 37748.0 | 54463.0 | 41932.0 | 48149.0 |
| J044 | chr12 | 6536817 | 6536919 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.9 | 0.325 | 0.9543 | NA | NA | NA | 3.0 | 0.0 | 0.0 | 2.0 | 1.0 | 0.0 |
| J045 | chr12 | 6537010 | 6537100 | TRUE | OK | 40777.2 | 0.00211 | 0.3637 | 0.7963 | -0.072 | -0.036 | 45143.0 | 35073.0 | 33084.0 | 46583.0 | 43118.0 | 43187.0 |
| J046 | chr12 | 6537216 | 6537308 | TRUE | OK | 53855.1 | 0.00445 | 0.3538 | 0.7928 | -0.105 | -0.053 | 61052.0 | 46493.0 | 43635.0 | 63551.0 | 54986.0 | 55774.0 |
| J047 | chr12 | 6537390 | 6537583 | TRUE | OK | 59837.5 | 0.00129 | 0.1523 | 0.6904 | -0.087 | -0.044 | 65250.0 | 51568.0 | 49637.0 | 67764.0 | 64863.0 | 61848.0 |
| J048 | chr12 | 6537996 | 6538100 | TRUE | OK | 55693.8 | 0.00291 | 0.8767 | 0.9696 | -0.006 | -0.003 | 58631.0 | 48019.0 | 44450.0 | 60307.0 | 68733.0 | 55267.0 |
| N049 | chr12 | 6537985 | 6538140 | TRUE | OK | 1097.6 | 0.00603 | 0.1818 | 0.7121 | 0.182 | 0.091 | 1182.0 | 872.0 | 732.0 | 1234.0 | 1459.0 | 1145.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000111640.15 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |