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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Normalized Coverage Counts | |||||
MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
E001 | chr19 | 39433136 | 39433206 | TRUE | OK | 72.7 | 0.00334 | 0.6072 | 0.8861 | 0.084 | 0.042 | 65.7 | 67.3 | 70.9 | 58.3 | 97.4 | 76.7 |
E002 | chr19 | 39433206 | 39433216 | TRUE | OK | 533.8 | 0.004 | 0.1166 | 0.6565 | -0.169 | -0.085 | 583.4 | 538.5 | 512.1 | 426.0 | 725.9 | 416.6 |
E003 | chr19 | 39433216 | 39433222 | TRUE | OK | 562.5 | 0.00401 | 0.1127 | 0.6513 | -0.168 | -0.084 | 608.2 | 570.1 | 543.2 | 449.7 | 769.9 | 433.7 |
E004 | chr19 | 39433222 | 39433252 | TRUE | OK | 2160.8 | 0.00569 | 0.2393 | 0.7448 | 0.170 | 0.085 | 2098.3 | 2013.3 | 1772.6 | 1991.4 | 3254.7 | 1834.8 |
E005 | chr19 | 39433252 | 39433259 | TRUE | OK | 2435.4 | 0.00592 | 0.1457 | 0.6846 | 0.207 | 0.103 | 2361.9 | 2229.0 | 1954.4 | 2255.3 | 3695.7 | 2116.3 |
E006 | chr19 | 39433259 | 39433418 | TRUE | OK | 23321.4 | 0.00274 | 0.8176 | 0.9527 | 0.031 | 0.015 | 22585.0 | 22000.4 | 22466.8 | 21023.8 | 31772.5 | 20080.2 |
E007 | chr19 | 39433418 | 39433493 | TRUE | OK | 71.3 | 0.00788 | 0.0003571 | 0.03927 | 0.728 | 0.364 | 55.4 | 37.6 | 61.0 | 87.0 | 113.1 | 73.6 |
E008 | chr19 | 39433493 | 39433517 | TRUE | OK | 73.8 | 0.00422 | 0.1211 | 0.6612 | 0.261 | 0.130 | 74.2 | 56.4 | 62.1 | 76.1 | 100.6 | 73.6 |
E009 | chr19 | 39433517 | 39433521 | TRUE | OK | 436.2 | 0.00688 | 0.2598 | 0.7533 | 0.160 | 0.080 | 319.9 | 462.2 | 409.1 | 380.5 | 612.8 | 432.7 |
E010 | chr19 | 39433521 | 39433569 | TRUE | OK | 30132.0 | 0.00378 | 0.719 | 0.9235 | -0.033 | -0.017 | 29604.9 | 28608.3 | 29407.4 | 27229.2 | 39912.8 | 26029.6 |
E011 | chr19 | 39433569 | 39433664 | TRUE | OK | 285.1 | 0.00255 | 2.218e-11 | 2.636e-08 | 0.746 | 0.373 | 190.2 | 189.1 | 233.9 | 317.2 | 481.9 | 298.6 |
E012 | chr19 | 39433664 | 39433761 | TRUE | OK | 39547.0 | 0.00868 | 0.3745 | 0.8003 | -0.149 | -0.074 | 39182.1 | 37997.6 | 38793.5 | 35776.9 | 50847.9 | 34684.2 |
E013 | chr19 | 39433761 | 39434390 | TRUE | OK | 1017.1 | 0.00226 | 4.124e-19 | 1.498e-15 | 0.775 | 0.388 | 708.0 | 713.6 | 742.7 | 1154.3 | 1549.3 | 1234.7 |
E014 | chr19 | 39434390 | 39435606 | TRUE | OK | 868.7 | 0.0134 | 0.2847 | 0.7646 | 0.180 | 0.090 | 893.9 | 785.9 | 672.9 | 851.9 | 1013.0 | 994.6 |
E015 | chr19 | 39435606 | 39435657 | TRUE | OK | 37188.8 | 0.00518 | 0.2554 | 0.7516 | -0.163 | -0.081 | 36393.7 | 36422.8 | 36659.5 | 33521.6 | 46758.4 | 33377.0 |
E016 | chr19 | 39435657 | 39435705 | TRUE | OK | 32353.6 | 0.00426 | 0.1429 | 0.6823 | -0.182 | -0.091 | 32080.3 | 31978.6 | 31926.0 | 29027.9 | 40165.2 | 28943.7 |
E017 | chr19 | 39435705 | 39435708 | TRUE | OK | 27650.4 | 0.0042 | 0.1096 | 0.648 | -0.193 | -0.096 | 27913.5 | 27396.8 | 27342.2 | 24752.6 | 33850.8 | 24646.6 |
E018 | chr19 | 39435847 | 39435915 | TRUE | OK | 27450.9 | 0.00416 | 0.1077 | 0.6453 | -0.193 | -0.096 | 27714.7 | 27271.1 | 27092.8 | 24564.8 | 33595.2 | 24467.1 |
E019 | chr19 | 39435915 | 39435936 | TRUE | OK | 14652.2 | 0.00282 | 0.09827 | 0.6329 | -0.160 | -0.080 | 15149.6 | 14639.2 | 14363.4 | 13039.4 | 17818.4 | 12903.3 |
E020 | chr19 | 39435936 | 39435941 | TRUE | OK | 473.2 | 0.00383 | 0.3234 | 0.7809 | 0.102 | 0.051 | 466.6 | 460.3 | 390.2 | 453.6 | 614.9 | 453.9 |
E021 | chr19 | 39435941 | 39435948 | TRUE | OK | 410.5 | 0.00555 | 0.3343 | 0.7851 | 0.114 | 0.057 | 401.7 | 409.8 | 325.9 | 399.3 | 523.8 | 402.5 |
E022 | chr19 | 39435948 | 39435949 | TRUE | OK | 315.1 | 0.00615 | 0.3266 | 0.7821 | 0.123 | 0.061 | 312.2 | 303.9 | 253.9 | 323.2 | 390.7 | 306.6 |
J023 | chr19 | 39433418 | 39433493 | TRUE | OK | 22.5 | 0.00541 | 0.7713 | 0.9394 | -0.082 | -0.041 | 24.7 | 21.8 | 20.0 | 15.8 | 30.4 | 22.2 |
J024 | chr19 | 39433418 | 39433517 | TRUE | OK | 3.8 | 0.0247 | 0.614 | 0.8884 | 0.341 | 0.170 | 4.3 | 3.0 | 2.2 | 3.0 | 7.3 | 3.0 |
J025 | chr19 | 39433418 | 39433521 | TRUE | OK | 21601.3 | 0.00224 | 0.7781 | 0.9415 | -0.014 | -0.007 | 21101.7 | 20518.6 | 21051.2 | 19341.7 | 29123.3 | 18471.4 |
J026 | chr19 | 39433569 | 39433664 | TRUE | OK | 25982.8 | 0.0035 | 0.4672 | 0.8358 | -0.076 | -0.038 | 25951.7 | 24823.3 | 25437.7 | 23644.7 | 33582.6 | 22456.7 |
J027 | chr19 | 39433761 | 39435606 | TRUE | OK | 26838.5 | 0.00343 | 0.11 | 0.6486 | -0.171 | -0.085 | 27028.1 | 26089.2 | 26881.1 | 24152.7 | 33378.3 | 23501.8 |
J028 | chr19 | 39433761 | 39435657 | TRUE | OK | 614.8 | 0.00183 | 0.0902 | 0.6208 | -0.155 | -0.077 | 656.8 | 630.5 | 585.3 | 531.7 | 745.8 | 538.6 |
J029 | chr19 | 39435708 | 39435847 | TRUE | OK | 27236.0 | 0.00387 | 0.1001 | 0.6352 | -0.191 | -0.095 | 27481.9 | 27039.5 | 26898.8 | 24372.1 | 33351.1 | 24272.4 |
N030 | chr19 | 39433418 | 39433664 | TRUE | OK | 13.8 | 0.0107 | 0.1724 | 0.7051 | -0.498 | -0.249 | 16.2 | 12.9 | 17.7 | 5.9 | 14.7 | 15.1 |
N031 | chr19 | 39433558 | 39433664 | TRUE | OK | 14.6 | 0.0331 | 0.07637 | 0.5963 | 0.855 | 0.427 | 7.7 | 7.9 | 14.4 | 12.8 | 33.5 | 11.1 |
N032 | chr19 | 39435705 | 39435847 | TRUE | OK | 159.2 | 0.00715 | 0.07339 | 0.5902 | -0.327 | -0.163 | 187.7 | 181.1 | 144.1 | 138.4 | 166.6 | 137.2 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000105193.9 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |