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Normalized Counts Table (ENSG00000198715.13)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr1	156290088	156290095	TRUE	OK	6.8	0.038	0.1533	0.6911	-0.827	-0.413	9.4	12.9	5.5	4.0	7.3	2.0
E002	chr1	156290095	156290360	TRUE	OK	26.0	0.0393	0.7149	0.922	-0.099	-0.050	32.4	30.7	24.4	11.9	36.7	20.2
E003	chr1	156290540	156290579	TRUE	OK	10.1	0.0567	0.8422	0.9598	-0.097	-0.048	9.4	16.8	7.8	6.9	14.7	5.0
E004	chr1	156290579	156290686	TRUE	OK	16.3	0.00899	0.9598	0.9912	0.009	0.005	19.6	18.8	14.4	12.8	15.7	16.1
E005	chr1	156290686	156290976	TRUE	OK	23.0	0.0285	0.4925	0.8447	0.194	0.097	37.5	15.8	16.6	20.8	23.0	24.2
E006	chr1	156290976	156291106	TRUE	OK	17.9	0.0288	0.4126	0.8154	0.276	0.138	27.3	16.8	8.9	20.8	16.8	17.1
E007	chr1	156291402	156291506	TRUE	OK	360.2	0.00365	2.954e-16	7.464e-13	-1.034	-0.516	539.1	443.4	465.6	241.1	264.0	207.8
E008	chr1	156291506	156291550	TRUE	OK	321.5	0.00325	2.358e-18	7.796e-15	-1.081	-0.540	476.8	408.8	426.8	205.6	233.6	177.5
E009	chr1	156292686	156292687	TRUE	OK	9.1	0.0288	0.5228	0.8562	-0.302	-0.151	11.9	10.9	10.0	10.9	2.1	9.1
E010	chr1	156292687	156292694	TRUE	OK	16.2	0.0118	0.3335	0.7848	0.332	0.166	15.4	18.8	13.3	21.7	14.7	13.1
E011	chr1	156292694	156292885	TRUE	OK	123.4	0.00292	0.02388	0.4154	0.322	0.161	123.7	124.7	118.6	129.5	134.1	109.9
E012	chr1	156292885	156293120	TRUE	OK	259.5	0.00561	0.002567	0.1398	0.453	0.227	271.2	244.5	236.1	263.9	311.1	230.0
E013	chr1	156293120	156293209	TRUE	OK	177.4	0.00235	0.002248	0.1296	0.376	0.188	195.3	167.3	157.4	177.9	198.0	168.5
E014	chr1	156293319	156293372	TRUE	OK	156.3	0.00439	0.00102	0.07928	0.480	0.240	174.0	149.5	118.6	167.0	167.6	161.4
E015	chr1	156293372	156293381	TRUE	OK	136.8	0.00562	0.003382	0.163	0.469	0.234	153.5	130.7	103.1	149.2	136.2	148.3
E016	chr1	156293381	156293383	TRUE	OK	134.5	0.00564	0.007525	0.2505	0.429	0.215	151.0	131.6	103.1	144.3	130.9	146.3
E017	chr1	156293383	156293422	TRUE	OK	159.1	0.00459	0.0007806	0.06666	0.497	0.249	170.6	155.4	121.9	177.9	162.4	166.4
E018	chr1	156293422	156293429	TRUE	OK	136.5	0.00632	0.006247	0.2273	0.453	0.227	150.1	137.6	100.9	151.2	138.3	141.2
E019	chr1	156293429	156293517	TRUE	OK	171.8	0.00419	0.0002019	0.02628	0.533	0.266	174.0	169.3	136.4	198.6	177.0	175.5
E020	chr1	156293517	156293576	TRUE	OK	151.8	0.00274	7.423e-07	0.0002777	0.659	0.329	148.4	133.6	123.0	182.8	161.3	161.4
E021	chr1	156293576	156293616	TRUE	OK	9.6	0.0219	0.7045	0.9186	0.173	0.086	8.5	6.9	14.4	7.9	12.6	7.1
E022	chr1	156293616	156293617	TRUE	OK	7.2	0.0449	0.8019	0.9482	0.127	0.063	8.5	3.0	11.1	4.0	9.4	7.1
E023	chr1	156293617	156293667	TRUE	OK	9.5	0.0244	0.8979	0.9754	0.036	0.018	14.5	4.9	11.1	6.9	11.5	8.1
E024	chr1	156293667	156293710	TRUE	OK	9.1	0.0166	0.3817	0.803	-0.407	-0.204	14.5	7.9	11.1	6.9	9.4	5.0
E025	chr1	156293710	156294017	TRUE	OK	20.7	0.00959	0.5962	0.8821	0.154	0.077	25.6	22.8	15.5	14.8	24.1	21.2
E026	chr1	156294017	156294076	TRUE	OK	189.6	0.00207	2.607e-05	0.005291	0.498	0.249	199.6	175.2	161.8	205.6	195.9	199.7
E027	chr1	156294076	156294236	TRUE	OK	263.0	0.00407	0.005737	0.2178	0.369	0.185	270.4	242.5	269.4	282.6	242.0	271.3
E028	chr1	156294364	156294513	TRUE	OK	218.0	0.0106	0.2462	0.7478	0.229	0.115	228.6	205.9	237.2	238.2	173.9	223.9
E029	chr1	156294513	156294525	TRUE	OK	115.2	0.00644	0.5169	0.854	0.116	0.058	122.8	112.8	129.7	124.5	92.2	108.9
E030	chr1	156294525	156294565	TRUE	OK	128.0	0.00578	0.5108	0.8519	0.110	0.055	139.9	121.7	145.2	134.4	103.7	123.1
E031	chr1	156294565	156294675	TRUE	OK	8.8	0.0191	0.6591	0.9041	-0.212	-0.106	12.8	6.9	11.1	10.9	5.2	6.1
E032	chr1	156294675	156294758	TRUE	OK	9.8	0.0147	0.9137	0.9794	-0.057	-0.029	13.6	7.9	11.1	10.9	7.3	8.1
E033	chr1	156294758	156294992	TRUE	OK	167.0	0.00906	0.2579	0.7525	0.212	0.106	183.4	151.4	180.7	176.9	133.0	176.5
E034	chr1	156294992	156295016	TRUE	OK	80.4	0.00435	0.03086	0.4568	0.374	0.187	79.3	72.3	83.1	88.0	71.2	88.8
E035	chr1	156295296	156295525	TRUE	OK	16.4	0.0289	0.3972	0.8088	0.363	0.181	17.1	12.9	17.7	9.9	15.7	25.2
E036	chr1	156295525	156295647	TRUE	OK	101.0	0.00349	0.0094	0.2792	0.404	0.202	99.8	100.0	92.0	103.8	95.3	115.0
E037	chr1	156295647	156295653	TRUE	OK	49.0	0.00425	0.09513	0.6281	0.333	0.167	51.2	49.5	43.2	54.4	45.0	50.4
E038	chr1	156295653	156295654	TRUE	OK	37.8	0.0064	0.06703	0.5767	0.429	0.215	37.5	34.6	35.5	49.4	36.7	33.3
E039	chr1	156295654	156295679	TRUE	OK	37.2	0.00681	0.05532	0.548	0.457	0.228	36.7	32.7	35.5	49.4	35.6	33.3
E040	chr1	156295679	156295680	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.61	0.4518	NA	NA	NA	1.7	0.0	0.0	0.0	0.0	0.0
E041	chr1	156295680	156295689	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.61	0.4518	NA	NA	NA	1.7	0.0	0.0	0.0	0.0	0.0
J042	chr1	156290360	156290976	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J043	chr1	156290360	156292885	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.0546	0.095	NA	NA	NA	3.4	4.0	1.1	0.0	1.0	1.0
J044	chr1	156291106	156291402	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J045	chr1	156291106	156292885	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.123	0.8299	NA	NA	NA	0.9	0.0	1.1	1.0	0.0	1.0
J046	chr1	156293120	156294758	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J047	chr1	156293209	156293319	TRUE	OK	96.7	0.00406	0.00144	0.0987	0.508	0.254	110.0	88.1	69.8	103.8	105.8	102.9
J048	chr1	156293209	156293617	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.108	0.8768	NA	NA	NA	1.7	1.0	0.0	1.0	1.0	0.0
J049	chr1	156293209	156294017	TRUE	OK	7.8	0.0356	0.6101	0.887	0.269	0.134	6.0	11.9	5.5	6.9	11.5	5.0
J050	chr1	156293429	156294017	TRUE	OK	9.2	0.0109	0.5754	0.8751	0.229	0.115	11.1	9.9	6.7	10.9	8.4	8.1
J051	chr1	156293576	156294017	TRUE	OK	108.5	0.00204	1.073e-06	0.00038	0.679	0.340	100.7	97.0	87.6	129.5	115.2	121.0
J052	chr1	156293710	156294017	FALSE	LOW_COUNTS_INDEP_FILTER	2.7	0.0466	0.5369	NA	NA	NA	6.0	3.0	1.1	3.0	1.0	2.0
J053	chr1	156294236	156294364	TRUE	OK	140.5	0.00938	0.2449	0.7473	0.228	0.114	142.4	132.6	156.3	151.2	112.1	148.3
J054	chr1	156294525	156294675	FALSE	LOW_COUNTS_INDEP_FILTER	0.1	0.589	0.6709	NA	NA	NA	0.9	0.0	0.0	0.0	0.0	0.0
J055	chr1	156294565	156294758	TRUE	OK	77.9	0.00921	0.8726	0.9684	-0.033	-0.016	89.6	74.2	94.2	81.0	54.5	73.6
J056	chr1	156294565	156295525	TRUE	OK	21.4	0.00586	0.001483	0.1007	0.911	0.455	16.2	20.8	13.3	23.7	27.2	27.2
J057	chr1	156294758	156295525	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J058	chr1	156295016	156295296	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J059	chr1	156295016	156295525	TRUE	OK	70.7	0.00338	0.07145	0.5857	0.310	0.155	69.1	66.3	75.4	76.1	61.8	75.7
N060	chr1	156286473	156291384	TRUE	OK	225.0	0.00234	4.345e-15	9.409e-12	-0.955	-0.477	352.3	280.1	279.4	150.2	148.7	139.2

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000198715.13
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE