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Normalized Counts Table (ENSG00000180398.12)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr2	46901869	46901873	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.227	0.7057	NA	NA	NA	0.0	0.0	1.1	1.0	1.0	0.0
E002	chr2	46901873	46901966	TRUE	OK	223.8	0.0427	0.1927	0.719	0.523	0.261	155.2	165.3	163.0	201.6	411.7	246.1
E003	chr2	46901966	46904854	TRUE	OK	6374.4	0.00229	0.2494	0.7493	0.089	0.044	5471.0	5675.5	5673.5	7486.3	6445.4	7494.7
E004	chr2	46904854	46904957	TRUE	OK	726.0	0.0353	0.6238	0.8919	-0.057	-0.028	709.7	684.0	584.2	1120.7	418.0	839.2
E005	chr2	46904957	46905244	TRUE	OK	1277.1	0.0192	0.7662	0.9379	-0.018	-0.009	1189.0	1212.5	1029.8	1811.5	897.7	1522.1
E006	chr2	46905244	46905270	TRUE	OK	576.5	0.00437	0.7363	0.9285	-0.035	-0.018	563.8	529.5	464.5	727.4	507.0	666.8
E007	chr2	46905270	46905367	TRUE	OK	816.9	0.00331	0.9972	0.9998	0.000	0.000	777.9	756.2	645.2	1011.0	768.9	942.1
E008	chr2	46905367	46905393	TRUE	OK	645.1	0.0038	0.6384	0.8972	0.049	0.024	589.4	603.8	497.7	807.4	661.0	711.1
E009	chr2	46905393	46905465	TRUE	OK	812.8	0.00401	0.2196	0.735	0.133	0.066	733.6	718.6	615.2	1002.1	885.2	922.0
E010	chr2	46905465	46905590	TRUE	OK	1051.5	0.0039	0.1643	0.6994	0.149	0.075	969.0	906.7	787.1	1325.3	1090.5	1230.6
E011	chr2	46905590	46905594	TRUE	OK	601.6	0.00425	0.1938	0.7195	0.153	0.077	567.2	489.0	460.0	785.7	607.6	700.0
E012	chr2	46905816	46905982	TRUE	OK	16.5	0.0183	0.05541	0.5482	-0.702	-0.351	16.2	19.8	20.0	7.9	15.7	19.2
E013	chr2	46907528	46907699	TRUE	OK	7.3	0.0227	0.02816	0.4417	1.160	0.580	3.4	6.9	1.1	11.9	11.5	9.1
E014	chr2	46907699	46907809	TRUE	OK	19.1	0.00913	0.9245	0.9822	-0.032	-0.016	14.5	22.8	14.4	20.8	21.0	21.2
E015	chr2	46907809	46907934	TRUE	OK	1048.9	0.00385	0.4235	0.8196	0.092	0.046	989.4	885.9	835.8	1352.0	986.8	1243.7
E016	chr2	46907934	46907969	TRUE	OK	901.2	0.00795	0.9089	0.9782	0.025	0.012	901.6	789.9	692.8	1171.1	782.5	1069.2
E017	chr2	46908706	46909022	TRUE	OK	18.2	0.0385	0.8647	0.9663	0.055	0.027	11.9	25.7	10.0	20.8	13.6	27.2
E018	chr2	46909022	46909072	TRUE	OK	997.4	0.00388	0.7132	0.9214	-0.031	-0.015	959.6	868.1	863.6	1218.6	863.2	1211.5
E019	chr2	46909072	46909177	TRUE	OK	985.6	0.00276	0.3663	0.7974	-0.079	-0.039	930.6	858.2	915.7	1146.4	864.2	1198.3
E020	chr2	46910779	46910873	TRUE	OK	38.9	0.0109	0.5275	0.8578	-0.166	-0.083	46.9	30.7	32.1	39.5	33.5	50.4
E021	chr2	46912542	46912658	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.0589	0.1853	NA	NA	NA	2.6	2.0	3.3	1.0	2.1	1.0
E022	chr2	46913699	46914068	TRUE	OK	11.7	0.0762	0.6577	0.9036	0.184	0.092	16.2	8.9	3.3	8.9	14.7	18.2
E023	chr2	46914068	46914074	TRUE	OK	4.5	0.0785	0.8182	0.9529	-0.233	-0.117	8.5	2.0	2.2	4.9	3.1	6.1
E024	chr2	46914074	46914118	TRUE	OK	4.5	0.112	0.8938	0.9743	-0.015	-0.008	8.5	2.0	1.1	5.9	3.1	6.1
E025	chr2	46915722	46915761	TRUE	OK	557.4	0.00338	0.1594	0.6959	0.154	0.077	514.3	455.3	434.5	650.3	564.6	725.3
E026	chr2	46915761	46915780	TRUE	OK	334.7	0.00313	0.06006	0.5602	0.210	0.105	303.7	277.1	241.7	405.2	356.2	424.7
E027	chr2	46915780	46915789	TRUE	OK	88.7	0.0123	0.09906	0.6339	0.371	0.185	86.2	63.3	53.2	128.5	81.7	119.0
E028	chr2	46915789	46915791	TRUE	OK	37.9	0.0057	0.1531	0.691	0.332	0.166	35.8	28.7	23.3	53.4	37.7	48.4
E029	chr2	46915791	46915810	TRUE	OK	35.6	0.006	0.05642	0.5508	0.456	0.228	33.3	23.8	21.1	49.4	37.7	48.4
E030	chr2	46915810	46915816	FALSE	LOW_COUNTS_INDEP_FILTER	0.9	0.747	0.7579	NA	NA	NA	0.0	0.0	3.3	2.0	0.0	0.0
E031	chr2	46915816	46915868	FALSE	LOW_COUNTS_INDEP_FILTER	2.2	0.181	0.2342	NA	NA	NA	0.0	5.9	3.3	2.0	1.0	1.0
E032	chr2	46915980	46916054	TRUE	OK	15.3	0.0128	0.6994	0.917	-0.135	-0.068	11.1	19.8	12.2	20.8	13.6	14.1
E033	chr2	46916054	46916112	TRUE	OK	6.8	0.0773	0.6118	0.8876	0.377	0.189	3.4	7.9	4.4	13.8	8.4	3.0
E034	chr2	46941571	46941714	TRUE	OK	475.0	0.0015	1.718e-21	7.477e-18	-0.811	-0.405	543.3	526.6	578.7	434.8	353.0	413.6
E035	chr2	46941714	46941727	TRUE	OK	279.0	0.00256	2.337e-13	3.921e-10	-0.809	-0.404	331.0	301.9	339.2	269.8	194.8	237.0
E036	chr2	46941727	46941732	TRUE	OK	9.1	0.0317	0.336	0.7857	-0.486	-0.243	6.0	7.9	15.5	8.9	9.4	7.1
E037	chr2	46941732	46941773	TRUE	OK	6.3	0.063	0.7915	0.9453	-0.204	-0.102	1.7	6.9	10.0	4.9	7.3	7.1
E038	chr2	46941773	46941855	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.505	0.6171	NA	NA	NA	0.0	0.0	2.2	0.0	1.0	0.0
J039	chr2	46905590	46907809	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.174	0.07877	NA	NA	NA	0.0	0.0	0.0	0.0	2.1	2.0
J040	chr2	46905594	46907809	TRUE	OK	578.3	0.00419	0.1841	0.7136	0.157	0.079	543.3	476.1	435.7	763.0	577.2	674.8
J041	chr2	46905594	46915722	FALSE	LOW_COUNTS_INDEP_FILTER	0.6	0.549	0.5148	NA	NA	NA	2.6	0.0	0.0	0.0	1.0	0.0
J042	chr2	46905594	46941571	FALSE	LOW_COUNTS_INDEP_FILTER	1.6	0.179	0.7518	NA	NA	NA	2.6	0.0	1.1	1.0	4.2	1.0
J043	chr2	46905982	46907809	FALSE	LOW_COUNTS_INDEP_FILTER	2.5	0.0369	0.3053	NA	NA	NA	3.4	2.0	3.3	2.0	3.1	1.0
J044	chr2	46907969	46909022	TRUE	OK	721.0	0.00773	0.7796	0.9419	-0.028	-0.014	724.2	626.5	593.1	935.9	592.9	853.4
J045	chr2	46907969	46915722	TRUE	OK	26.7	0.00603	0.5867	0.8788	0.140	0.070	29.0	17.8	20.0	33.6	29.3	30.3
J046	chr2	46907969	46915980	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.252	0.2921	NA	NA	NA	0.0	0.0	0.0	1.0	1.0	0.0
J047	chr2	46907969	46941571	TRUE	OK	5.3	0.0367	0.3145	0.777	-0.621	-0.310	4.3	8.9	4.4	3.0	7.3	4.0
J048	chr2	46909177	46910779	TRUE	OK	31.3	0.00431	0.9548	0.99	-0.012	-0.006	33.3	25.7	24.4	36.6	29.3	38.3
J049	chr2	46909177	46912542	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.242	0.2963	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	1.0
J050	chr2	46909177	46913699	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.282	0.3326	NA	NA	NA	0.9	0.0	0.0	0.0	3.1	1.0
J051	chr2	46909177	46915722	TRUE	OK	505.1	0.00243	0.09755	0.632	0.164	0.082	455.5	414.7	396.9	592.0	508.0	663.7
J052	chr2	46909177	46915980	TRUE	OK	10.1	0.0118	0.6076	0.8861	-0.211	-0.105	8.5	13.9	6.7	9.9	8.4	13.1
J053	chr2	46909177	46941571	TRUE	OK	143.3	0.00801	1.177e-08	7.456e-06	-1.016	-0.508	168.9	159.4	202.9	135.4	78.6	115.0
J054	chr2	46910873	46914068	FALSE	LOW_COUNTS_INDEP_FILTER	0.4	0.737	0.3303	NA	NA	NA	0.0	0.0	2.2	0.0	0.0	0.0
J055	chr2	46910873	46915722	TRUE	OK	19.6	0.00763	0.8285	0.9558	0.063	0.031	21.3	15.8	13.3	18.8	22.0	26.2
J056	chr2	46912658	46915722	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
N057	chr2	46941725	46950362	TRUE	OK	247.8	0.00479	3.372e-09	2.426e-06	-0.816	-0.408	318.2	254.4	292.7	239.2	167.6	214.9

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000180398.12
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE