<< | < Prev Gene | TOP | Next Gene > | >> |
binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Normalized Coverage Counts | |||||
MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
E001 | chr5 | 179806397 | 179806407 | TRUE | OK | 38.6 | 0.0637 | 0.0527 | 0.5412 | -0.837 | -0.419 | 30.7 | 39.6 | 46.6 | 56.3 | 17.8 | 40.3 |
E002 | chr5 | 179806407 | 179806591 | TRUE | OK | 1324.0 | 0.00349 | 1.704e-14 | 3.406e-11 | -0.801 | -0.400 | 1311.9 | 1221.4 | 1386.8 | 1406.3 | 1331.4 | 1286.1 |
E003 | chr5 | 179807323 | 179808427 | TRUE | OK | 62.4 | 0.00818 | 6.292e-09 | 4.223e-06 | -1.236 | -0.618 | 62.3 | 79.2 | 73.2 | 63.3 | 46.1 | 50.4 |
E004 | chr5 | 179811573 | 179811614 | TRUE | OK | 298.5 | 0.0114 | 0.0001124 | 0.01673 | -0.736 | -0.368 | 295.1 | 313.8 | 259.4 | 362.7 | 272.4 | 287.5 |
E005 | chr5 | 179811614 | 179811682 | TRUE | OK | 391.9 | 0.00545 | 1.157e-08 | 7.361e-06 | -0.782 | -0.391 | 382.1 | 403.8 | 372.5 | 443.7 | 378.2 | 371.2 |
E006 | chr5 | 179811987 | 179812406 | TRUE | OK | 52.7 | 0.0151 | 8.864e-06 | 0.002205 | -1.180 | -0.590 | 65.7 | 71.3 | 39.9 | 44.5 | 54.5 | 40.3 |
E007 | chr5 | 179812406 | 179813024 | TRUE | OK | 248.9 | 0.00191 | 1.606e-26 | 9.942e-23 | -1.113 | -0.556 | 267.8 | 291.0 | 261.6 | 218.4 | 256.6 | 197.7 |
E008 | chr5 | 179813024 | 179813598 | TRUE | OK | 193.1 | 0.00201 | 4.475e-34 | 3.784e-30 | -1.381 | -0.690 | 237.1 | 228.6 | 222.8 | 137.4 | 181.2 | 151.3 |
E009 | chr5 | 179813598 | 179813641 | TRUE | OK | 46.9 | 0.00993 | 4.638e-10 | 4.144e-07 | -1.503 | -0.751 | 67.4 | 55.4 | 49.9 | 43.5 | 37.7 | 27.2 |
E010 | chr5 | 179818877 | 179818966 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.1 | 0.165 | 0.9214 | NA | NA | NA | 0.9 | 2.0 | 3.3 | 4.9 | 7.3 | 0.0 |
E011 | chr5 | 179818966 | 179819037 | TRUE | OK | 5.1 | 0.17 | 0.4559 | 0.8314 | -0.452 | -0.226 | 6.0 | 4.0 | 3.3 | 5.9 | 11.5 | 0.0 |
E012 | chr5 | 179820103 | 179820387 | TRUE | OK | 5.1 | 0.0908 | 0.03108 | 0.4578 | -1.672 | -0.836 | 7.7 | 10.9 | 1.1 | 4.0 | 3.1 | 4.0 |
E013 | chr5 | 179820606 | 179820706 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.085 | 0.3182 | NA | NA | NA | 1.7 | 2.0 | 1.1 | 2.0 | 0.0 | 2.0 |
E014 | chr5 | 179820877 | 179820884 | TRUE | OK | 3.8 | 0.0317 | 0.8586 | 0.9646 | -0.120 | -0.060 | 2.6 | 4.0 | 2.2 | 4.0 | 6.3 | 4.0 |
E015 | chr5 | 179820884 | 179820904 | TRUE | OK | 18.7 | 0.0103 | 0.367 | 0.7977 | -0.293 | -0.146 | 11.9 | 19.8 | 14.4 | 25.7 | 23.0 | 17.1 |
E016 | chr5 | 179820904 | 179820920 | TRUE | OK | 1349.2 | 0.00588 | 0.7376 | 0.9288 | 0.041 | 0.020 | 1015.9 | 906.7 | 954.5 | 1858.0 | 1642.5 | 1717.8 |
E017 | chr5 | 179820920 | 179821141 | TRUE | OK | 6422.2 | 0.00643 | 0.6631 | 0.9054 | -0.062 | -0.031 | 4904.6 | 4588.7 | 4790.0 | 8506.2 | 7596.7 | 8147.3 |
E018 | chr5 | 179821550 | 179821567 | TRUE | OK | 34.3 | 0.0269 | 0.2067 | 0.7272 | 0.442 | 0.221 | 24.7 | 19.8 | 15.5 | 52.4 | 34.6 | 58.5 |
E019 | chr5 | 179821567 | 179821707 | TRUE | OK | 68.3 | 0.0153 | 0.6596 | 0.9043 | 0.117 | 0.059 | 48.6 | 46.5 | 45.5 | 88.9 | 71.2 | 108.9 |
E020 | chr5 | 179822484 | 179822888 | TRUE | OK | 357.7 | 0.0168 | 0.5738 | 0.8745 | -0.137 | -0.068 | 318.2 | 286.1 | 218.4 | 409.1 | 399.1 | 515.4 |
E021 | chr5 | 179822888 | 179822957 | TRUE | OK | 211.2 | 0.0161 | 0.4866 | 0.8428 | 0.145 | 0.073 | 171.4 | 141.5 | 115.3 | 299.5 | 242.0 | 297.6 |
E022 | chr5 | 179822957 | 179823025 | TRUE | OK | 7092.8 | 0.00795 | 0.3115 | 0.7759 | -0.155 | -0.077 | 5771.2 | 5245.0 | 5306.6 | 9483.6 | 8183.3 | 8566.9 |
E023 | chr5 | 179823025 | 179823053 | TRUE | OK | 5562.4 | 0.0094 | 0.1806 | 0.7109 | -0.220 | -0.110 | 4721.2 | 4165.1 | 4259.0 | 7508.0 | 6219.2 | 6502.1 |
E024 | chr5 | 179823564 | 179823857 | TRUE | OK | 183.6 | 0.00989 | 0.005543 | 0.214 | 0.538 | 0.269 | 116.0 | 109.9 | 82.0 | 247.1 | 331.0 | 215.9 |
E025 | chr5 | 179823857 | 179823939 | TRUE | OK | 6644.1 | 0.00637 | 0.391 | 0.8063 | -0.120 | -0.060 | 5425.8 | 4682.8 | 4994.0 | 8778.9 | 8043.9 | 7939.5 |
E026 | chr5 | 179823939 | 179823968 | TRUE | OK | 5827.5 | 0.005 | 0.7756 | 0.9406 | -0.039 | -0.020 | 4618.0 | 4050.3 | 4178.1 | 7703.7 | 7336.9 | 7078.1 |
E027 | chr5 | 179823968 | 179824057 | TRUE | OK | 7501.8 | 0.00585 | 0.8058 | 0.9491 | 0.026 | 0.013 | 5874.4 | 5156.9 | 5093.8 | 10097.3 | 9644.6 | 9143.9 |
E028 | chr5 | 179824057 | 179824087 | TRUE | OK | 6218.3 | 0.00524 | 0.4399 | 0.8259 | 0.089 | 0.044 | 4741.7 | 4232.4 | 4058.4 | 8438.0 | 8214.7 | 7624.8 |
E029 | chr5 | 179824181 | 179824237 | TRUE | OK | 7746.6 | 0.0024 | 0.2811 | 0.7631 | 0.087 | 0.043 | 5586.1 | 5441.9 | 5237.9 | 10270.2 | 10485.7 | 9457.6 |
E030 | chr5 | 179824237 | 179824287 | TRUE | OK | 6890.9 | 0.000973 | 0.0137 | 0.3322 | 0.133 | 0.067 | 4780.9 | 4757.0 | 4659.2 | 8989.4 | 9717.9 | 8440.8 |
E031 | chr5 | 179824287 | 179824314 | TRUE | OK | 7290.4 | 0.000577 | 0.02541 | 0.4251 | 0.095 | 0.047 | 5079.4 | 5081.7 | 5093.8 | 9352.1 | 10209.2 | 8926.0 |
E032 | chr5 | 179824314 | 179824323 | TRUE | OK | 7175.4 | 0.000493 | 0.05708 | 0.5524 | 0.075 | 0.038 | 5026.6 | 5024.2 | 5079.3 | 9114.9 | 9984.0 | 8823.1 |
E033 | chr5 | 179825145 | 179825226 | TRUE | OK | 9728.5 | 0.00126 | 0.4171 | 0.8173 | 0.046 | 0.023 | 6898.8 | 6948.4 | 6918.4 | 12479.1 | 13098.3 | 12027.8 |
E034 | chr5 | 179833031 | 179833227 | TRUE | OK | 11081.8 | 0.00145 | 0.4236 | 0.8196 | 0.048 | 0.024 | 7816.6 | 7888.7 | 7944.9 | 14277.7 | 14848.7 | 13714.3 |
E035 | chr5 | 179833227 | 179833246 | TRUE | OK | 5165.8 | 0.00144 | 0.9524 | 0.9895 | -0.006 | -0.003 | 3736.9 | 3682.1 | 3824.5 | 6682.8 | 6856.1 | 6212.6 |
E036 | chr5 | 179833246 | 179833386 | TRUE | OK | 277.2 | 0.00259 | 0.07652 | 0.5965 | -0.198 | -0.099 | 195.3 | 210.8 | 251.6 | 313.3 | 363.5 | 328.8 |
E037 | chr5 | 179833586 | 179833782 | TRUE | OK | 10613.3 | 0.000974 | 0.5204 | 0.8554 | -0.037 | -0.018 | 7809.8 | 7620.5 | 7911.7 | 13334.9 | 14266.2 | 12736.9 |
E038 | chr5 | 179836435 | 179836470 | TRUE | OK | 6581.5 | 0.0016 | 0.2692 | 0.7577 | -0.077 | -0.039 | 5151.9 | 4787.7 | 4776.7 | 8039.7 | 8915.5 | 7817.4 |
E039 | chr5 | 179836470 | 179837218 | TRUE | OK | 20625.0 | 0.00367 | 0.3721 | 0.7996 | 0.101 | 0.050 | 14286.4 | 14617.4 | 14639.4 | 24476.8 | 31515.8 | 24213.9 |
E040 | chr5 | 179837218 | 179837255 | TRUE | OK | 2398.5 | 0.00236 | 0.1005 | 0.6359 | 0.148 | 0.074 | 1563.5 | 1651.0 | 1671.7 | 2861.1 | 3775.3 | 2868.7 |
E041 | chr5 | 179837255 | 179838078 | TRUE | OK | 3711.0 | 0.00314 | 0.1983 | 0.7224 | 0.134 | 0.067 | 2598.2 | 2501.2 | 2515.3 | 4411.7 | 5885.0 | 4354.6 |
J042 | chr5 | 179806591 | 179811573 | TRUE | OK | 116.1 | 0.0127 | 0.0004958 | 0.04934 | -0.759 | -0.379 | 113.4 | 127.7 | 99.8 | 143.3 | 102.7 | 109.9 |
J043 | chr5 | 179808427 | 179811573 | TRUE | OK | 3.6 | 0.0429 | 0.1461 | 0.685 | -1.026 | -0.513 | 2.6 | 5.9 | 3.3 | 5.9 | 2.1 | 2.0 |
J044 | chr5 | 179811682 | 179811987 | TRUE | OK | 6.4 | 0.0181 | 7.531e-05 | 0.01228 | -2.107 | -1.054 | 9.4 | 7.9 | 10.0 | 6.9 | 2.1 | 2.0 |
J045 | chr5 | 179811682 | 179812406 | TRUE | OK | 50.2 | 0.022 | 0.001199 | 0.08785 | -0.991 | -0.495 | 44.4 | 73.2 | 42.1 | 56.3 | 45.0 | 40.3 |
J046 | chr5 | 179811682 | 179822957 | TRUE | OK | 220.6 | 0.00122 | 1.007e-12 | 1.465e-09 | -0.704 | -0.352 | 219.2 | 200.9 | 213.9 | 232.2 | 246.2 | 210.8 |
J047 | chr5 | 179819037 | 179820103 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J048 | chr5 | 179819037 | 179822957 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.0582 | 0.4398 | NA | NA | NA | 1.7 | 1.0 | 2.2 | 2.0 | 3.1 | 0.0 |
J049 | chr5 | 179820387 | 179822957 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.252 | 0.1217 | NA | NA | NA | 0.9 | 0.0 | 1.1 | 0.0 | 0.0 | 0.0 |
J050 | chr5 | 179820706 | 179822957 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.254 | 0.4233 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 1.0 |
J051 | chr5 | 179821141 | 179821550 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.156 | 0.1412 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 2.0 | 2.1 | 0.0 |
J052 | chr5 | 179821141 | 179822888 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.219 | 0.2012 | NA | NA | NA | 6.8 | 0.0 | 2.2 | 2.0 | 1.0 | 2.0 |
J053 | chr5 | 179821141 | 179822957 | TRUE | OK | 4461.0 | 0.0053 | 0.3874 | 0.8051 | -0.110 | -0.055 | 3492.9 | 3299.0 | 3326.7 | 5833.8 | 5279.5 | 5533.7 |
J054 | chr5 | 179821141 | 179823025 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0435 | 0.6032 | NA | NA | NA | 1.7 | 2.0 | 1.1 | 2.0 | 2.1 | 2.0 |
J055 | chr5 | 179821707 | 179822957 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.9 | 0.047 | 0.1998 | NA | NA | NA | 0.9 | 0.0 | 1.1 | 3.0 | 4.2 | 2.0 |
J056 | chr5 | 179823053 | 179823857 | TRUE | OK | 4406.1 | 0.0103 | 0.2091 | 0.7287 | -0.217 | -0.109 | 3787.2 | 3210.9 | 3424.3 | 5943.5 | 4860.5 | 5209.9 |
J057 | chr5 | 179824087 | 179824181 | TRUE | OK | 5504.5 | 0.00518 | 0.3733 | 0.7999 | 0.102 | 0.051 | 4174.4 | 3765.2 | 3527.4 | 7478.3 | 7290.8 | 6790.6 |
J058 | chr5 | 179824323 | 179825145 | TRUE | OK | 7026.6 | 0.000331 | 0.09028 | 0.6209 | 0.057 | 0.028 | 4939.6 | 4952.0 | 5032.8 | 8873.8 | 9716.8 | 8644.6 |
J059 | chr5 | 179825226 | 179833031 | TRUE | OK | 6486.6 | 0.00118 | 0.3995 | 0.8099 | 0.047 | 0.024 | 4646.1 | 4584.8 | 4592.7 | 8332.2 | 8693.4 | 8070.6 |
J060 | chr5 | 179833227 | 179836470 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J061 | chr5 | 179833246 | 179833586 | TRUE | OK | 4647.2 | 0.000991 | 0.7276 | 0.926 | -0.021 | -0.011 | 3370.9 | 3322.8 | 3484.2 | 5947.5 | 6190.9 | 5567.0 |
J062 | chr5 | 179833782 | 179836435 | TRUE | OK | 5191.0 | 0.000847 | 0.1761 | 0.7077 | -0.071 | -0.036 | 4000.4 | 3783.0 | 3803.4 | 6340.8 | 7051.9 | 6166.2 |
N063 | chr5 | 179801969 | 179806486 | TRUE | OK | 966.5 | 0.00365 | 1.712e-13 | 2.929e-10 | -0.799 | -0.399 | 968.1 | 856.2 | 1040.9 | 1022.9 | 1013.0 | 897.7 |
N064 | chr5 | 179806563 | 179811573 | TRUE | OK | 21.1 | 0.0471 | 0.02007 | 0.3877 | -1.000 | -0.500 | 25.6 | 23.8 | 17.7 | 31.6 | 12.6 | 15.1 |
N065 | chr5 | 179807123 | 179811573 | TRUE | OK | 71.2 | 0.00981 | 0.0003336 | 0.03752 | -0.783 | -0.391 | 72.5 | 79.2 | 58.8 | 76.1 | 61.8 | 78.7 |
N066 | chr5 | 179825226 | 179826185 | TRUE | OK | 9.6 | 0.0301 | 0.4418 | 0.8267 | -0.400 | -0.200 | 13.6 | 4.9 | 5.5 | 10.9 | 11.5 | 11.1 |
N067 | chr5 | 179826291 | 179833031 | TRUE | OK | 78.6 | 0.0134 | 0.9447 | 0.9874 | 0.012 | 0.006 | 66.5 | 49.5 | 53.2 | 117.6 | 85.9 | 98.9 |
N068 | chr5 | 179833437 | 179833586 | TRUE | OK | 12.9 | 0.0121 | 0.6175 | 0.8895 | -0.193 | -0.096 | 7.7 | 10.9 | 12.2 | 15.8 | 11.5 | 19.2 |
N069 | chr5 | 179836565 | 179837716 | TRUE | OK | 32.6 | 0.0231 | 0.2071 | 0.7274 | -0.440 | -0.220 | 39.2 | 19.8 | 25.5 | 43.5 | 33.5 | 34.3 |
N070 | chr5 | 179837204 | 179837759 | TRUE | OK | 55.3 | 0.0221 | 0.006476 | 0.2317 | -0.833 | -0.417 | 69.9 | 59.4 | 36.6 | 55.3 | 50.3 | 60.5 |
N071 | chr5 | 179837885 | 179840871 | TRUE | OK | 39.5 | 0.01 | 0.09154 | 0.6234 | -0.428 | -0.214 | 37.5 | 33.7 | 31.0 | 42.5 | 37.7 | 54.5 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000161011.20 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |