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Normalized Counts Table (ENSG00000154889.16)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr18	11882621	11883470	TRUE	OK	150.7	0.00333	1.283e-27	8.417e-24	-1.625	-0.812	230.3	235.6	238.3	81.0	53.4	65.6
E002	chr18	11883470	11883689	TRUE	OK	90.5	0.0159	0.004931	0.2013	-0.681	-0.340	124.5	114.8	119.7	71.2	74.4	38.3
E003	chr18	11883689	11884052	TRUE	OK	105.5	0.011	0.9159	0.98	-0.014	-0.007	116.9	128.7	107.5	80.1	118.4	81.7
E004	chr18	11884052	11884067	TRUE	OK	62.1	0.00646	0.251	0.7501	-0.234	-0.117	75.1	78.2	67.6	38.5	57.6	55.5
E005	chr18	11884067	11884165	TRUE	OK	107.9	0.0079	0.338	0.7865	-0.185	-0.093	139.9	131.6	106.4	78.1	103.7	87.8
E006	chr18	11884165	11884194	TRUE	OK	101.6	0.0119	0.3936	0.8073	-0.188	-0.094	133.9	123.7	98.7	71.2	103.7	78.7
E007	chr18	11884194	11884489	TRUE	OK	277.1	0.00342	0.6018	0.8841	-0.064	-0.032	291.7	322.7	325.9	252.0	254.5	215.9
E008	chr18	11884489	11884627	TRUE	OK	246.6	0.0023	0.7254	0.9253	-0.040	-0.020	262.7	270.2	299.3	225.3	221.0	200.7
E009	chr18	11884876	11884878	TRUE	OK	57.8	0.00345	3.986e-12	5.262e-09	-1.389	-0.695	91.3	86.1	86.5	26.7	29.3	27.2
E010	chr18	11884878	11884892	TRUE	OK	109.8	0.00296	0.01277	0.3214	-0.373	-0.186	144.2	133.6	126.4	86.0	93.2	75.7
E011	chr18	11884892	11885043	TRUE	OK	161.7	0.0052	0.0005299	0.05158	-0.547	-0.273	227.7	206.9	182.9	110.7	132.0	109.9
E012	chr18	11885043	11885121	TRUE	OK	100.7	0.00347	7.275e-14	1.333e-10	-1.235	-0.617	162.9	136.6	145.2	47.4	56.6	55.5
E013	chr18	11885675	11885759	TRUE	OK	158.1	0.00407	0.0007229	0.06325	0.489	0.245	162.1	133.6	159.6	152.2	160.3	180.6
E014	chr18	11885759	11885816	TRUE	OK	148.2	0.00317	0.001036	0.0799	0.453	0.226	151.0	128.7	151.9	142.3	149.8	165.4
E015	chr18	11885816	11885912	TRUE	OK	44.6	0.0114	0.08069	0.6036	0.430	0.215	55.4	36.6	36.6	43.5	41.9	53.5
E016	chr18	11885912	11886114	TRUE	OK	33.0	0.0297	0.02073	0.393	0.804	0.402	38.4	16.8	27.7	46.4	28.3	40.3
E017	chr18	11886114	11886498	TRUE	OK	59.4	0.00671	0.003921	0.1772	0.599	0.300	46.9	64.3	52.1	70.2	55.5	67.6
E018	chr18	11886498	11886621	TRUE	OK	174.6	0.00173	2.055e-07	9.256e-05	0.609	0.305	165.5	155.4	164.1	193.7	184.4	184.6
E019	chr18	11886621	11886712	TRUE	OK	33.1	0.0101	0.01998	0.3869	0.629	0.314	29.9	28.7	31.0	48.4	31.4	29.3
E020	chr18	11886712	11886720	TRUE	OK	90.6	0.00557	0.0006981	0.06182	0.600	0.300	97.2	68.3	83.1	106.7	101.6	86.7
E021	chr18	11886720	11886778	TRUE	OK	113.9	0.00899	0.003867	0.1759	0.559	0.279	127.1	89.1	102.0	127.5	134.1	103.9
E022	chr18	11886778	11886781	TRUE	OK	43.0	0.0107	0.04232	0.5078	0.506	0.253	49.5	31.7	39.9	52.4	49.2	35.3
E023	chr18	11886781	11886796	TRUE	OK	25.8	0.0181	0.1537	0.6916	0.442	0.221	35.0	18.8	20.0	30.6	23.0	27.2
E024	chr18	11886796	11886916	TRUE	OK	37.6	0.0224	0.7449	0.9311	0.089	0.044	54.6	31.7	35.5	34.6	26.2	43.4
E025	chr18	11886916	11887025	TRUE	OK	208.3	0.00377	0.0002336	0.02924	0.492	0.246	228.6	187.1	186.2	215.4	209.5	222.9
E026	chr18	11888668	11888703	TRUE	OK	152.5	0.00387	0.001295	0.09226	0.460	0.230	169.7	131.6	140.8	153.2	157.1	162.4
E027	chr18	11888703	11888743	TRUE	OK	145.7	0.00309	0.0002247	0.02843	0.507	0.253	156.1	125.7	134.1	154.2	145.6	158.4
E028	chr18	11889386	11889415	TRUE	OK	134.4	0.00248	0.0001401	0.01981	0.511	0.256	140.7	116.8	125.3	146.3	138.3	139.2
E029	chr18	11889415	11889455	TRUE	OK	159.5	0.00224	6.544e-06	0.001747	0.567	0.284	162.1	144.5	140.8	177.9	165.5	166.4
E030	chr18	11889455	11889490	TRUE	OK	159.9	0.0024	2.607e-06	0.0008055	0.600	0.300	159.5	142.5	141.9	185.8	165.5	164.4
E031	chr18	11891185	11891470	TRUE	OK	10.7	0.0382	0.3426	0.7881	-0.487	-0.243	16.2	6.9	17.7	6.9	5.2	11.1
E032	chr18	11893047	11893467	TRUE	OK	17.0	0.027	0.1723	0.705	0.554	0.277	14.5	11.9	21.1	14.8	13.6	26.2
E033	chr18	11893467	11893566	TRUE	OK	174.1	0.00296	0.0009106	0.07371	0.436	0.218	170.6	157.4	184.0	194.7	161.3	176.5
E034	chr18	11893566	11893576	TRUE	OK	120.2	0.00693	0.0438	0.5133	0.363	0.182	114.3	109.9	136.4	139.3	100.6	121.0
E035	chr18	11895184	11895277	TRUE	OK	7.5	0.0192	0.4918	0.8445	-0.341	-0.171	6.8	8.9	12.2	4.9	5.2	7.1
E036	chr18	11896982	11896983	FALSE	LOW_COUNTS_INDEP_FILTER	2.1	0.109	0.8086	NA	NA	NA	4.3	0.0	2.2	1.0	2.1	3.0
E037	chr18	11896983	11896988	TRUE	OK	112.5	0.00844	0.07094	0.5848	0.351	0.176	104.9	102.9	130.8	133.4	94.3	108.9
E038	chr18	11896988	11897035	TRUE	OK	112.9	0.00791	0.06676	0.576	0.349	0.174	108.3	101.9	129.7	132.4	93.2	112.0
E039	chr18	11897035	11897044	TRUE	OK	84.2	0.00887	0.09532	0.6282	0.349	0.175	84.4	75.2	93.1	101.8	66.0	84.7
E040	chr18	11897044	11897055	TRUE	OK	81.3	0.00918	0.1748	0.7067	0.291	0.146	83.6	74.2	90.9	98.8	62.9	77.7
E041	chr18	11897055	11897058	TRUE	OK	79.4	0.00949	0.1323	0.6723	0.326	0.163	81.0	70.3	88.7	96.9	61.8	77.7
E042	chr18	11897058	11897091	TRUE	OK	81.4	0.0111	0.1709	0.7041	0.309	0.155	91.3	70.3	85.4	99.8	62.9	78.7
E043	chr18	11897091	11897120	TRUE	OK	69.4	0.00815	0.1403	0.6794	0.311	0.155	76.8	60.4	73.2	83.0	54.5	68.6
E044	chr18	11897120	11897131	TRUE	OK	45.3	0.0132	0.6051	0.8852	0.135	0.067	58.9	40.6	45.5	53.4	32.5	41.4
E045	chr18	11897131	11897160	TRUE	OK	46.3	0.0154	0.8464	0.961	0.056	0.028	61.4	42.6	47.7	55.3	32.5	38.3
E046	chr18	11897160	11897163	TRUE	OK	38.9	0.0143	0.7033	0.9182	0.103	0.052	52.0	34.6	38.8	45.5	27.2	35.3
E047	chr18	11897163	11897185	TRUE	OK	40.5	0.0163	0.6195	0.8902	0.140	0.070	53.7	35.6	39.9	47.4	27.2	39.3
E048	chr18	11897185	11897277	TRUE	OK	91.9	0.00429	0.001895	0.1171	0.518	0.259	97.2	77.2	85.4	107.7	84.8	98.9
E049	chr18	11897277	11897299	TRUE	OK	81.2	0.00297	2.159e-05	0.004544	0.688	0.344	75.9	70.3	69.8	97.8	83.8	89.8
E050	chr18	11897299	11897326	TRUE	OK	106.4	0.00342	3.709e-06	0.001076	0.710	0.355	99.8	88.1	94.2	134.4	106.8	115.0
E051	chr18	11897326	11897356	TRUE	OK	150.2	0.00216	5.497e-08	2.961e-05	0.693	0.346	136.5	124.7	143.0	175.9	164.5	156.3
E052	chr18	11897525	11897620	TRUE	OK	20.6	0.0129	0.009506	0.2811	0.842	0.421	19.6	17.8	13.3	31.6	17.8	23.2
E053	chr18	11902266	11902358	FALSE	LOW_COUNTS_INDEP_FILTER	0.9	0.153	0.5212	NA	NA	NA	0.0	1.0	1.1	1.0	0.0	2.0
E054	chr18	11902584	11902748	FALSE	LOW_COUNTS_INDEP_FILTER	2.3	0.0511	0.648	NA	NA	NA	2.6	3.0	1.1	3.0	2.1	2.0
E055	chr18	11902748	11902755	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.0846	0.3218	NA	NA	NA	1.7	2.0	2.2	1.0	0.0	1.0
E056	chr18	11902755	11902779	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.0797	0.5709	NA	NA	NA	1.7	2.0	2.2	1.0	0.0	2.0
E057	chr18	11902779	11902856	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.0657	0.9076	NA	NA	NA	1.7	2.0	2.2	1.0	1.0	3.0
E058	chr18	11905181	11905279	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.209	0.8828	NA	NA	NA	1.7	0.0	1.1	2.0	0.0	0.0
E059	chr18	11905346	11905458	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.151	0.5139	NA	NA	NA	0.9	0.0	1.1	2.0	1.0	0.0
E060	chr18	11905737	11905825	TRUE	OK	3.2	0.12	0.37	0.7987	0.822	0.411	1.7	1.0	5.5	6.9	2.1	2.0
E061	chr18	11905825	11905911	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.0911	0.3212	NA	NA	NA	1.7	0.0	1.1	1.0	2.1	2.0
E062	chr18	11905911	11905953	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.0836	0.009949	NA	NA	NA	0.0	0.0	1.1	4.0	2.1	2.0
E063	chr18	11905953	11906202	FALSE	LOW_COUNTS_INDEP_FILTER	2.2	0.0875	0.2813	NA	NA	NA	0.9	1.0	3.3	4.9	1.0	2.0
E064	chr18	11906202	11906309	TRUE	OK	182.9	0.00181	1.629e-06	0.0005413	0.560	0.280	174.0	160.3	182.9	192.7	196.9	190.6
E065	chr18	11907895	11908200	TRUE	OK	5.1	0.112	0.7654	0.9377	-0.266	-0.133	5.1	10.9	2.2	3.0	7.3	2.0
E066	chr18	11908200	11908273	TRUE	OK	145.4	0.00255	4.237e-06	0.001204	0.608	0.304	148.4	128.7	124.2	164.1	155.0	152.3
E067	chr18	11908273	11908276	TRUE	OK	92.8	0.00466	0.003947	0.178	0.484	0.242	105.8	80.2	78.7	101.8	98.5	91.8
E068	chr18	11908276	11908295	TRUE	OK	86.7	0.00423	0.01733	0.3665	0.398	0.199	100.7	77.2	76.5	90.9	88.0	86.7
E069	chr18	11908295	11908301	TRUE	OK	64.3	0.00351	0.03625	0.4828	0.374	0.187	70.8	57.4	62.1	69.2	62.9	63.5
E070	chr18	11908301	11908308	TRUE	OK	51.6	0.00381	0.1056	0.6429	0.315	0.158	57.1	47.5	51.0	53.4	52.4	48.4
E071	chr18	11908308	11908315	TRUE	OK	30.8	0.00747	0.2879	0.7659	0.272	0.136	36.7	31.7	25.5	36.6	25.1	29.3
E072	chr18	11908315	11908317	TRUE	OK	17.7	0.0175	0.6326	0.8952	0.160	0.080	25.6	16.8	13.3	20.8	16.8	13.1
E073	chr18	11908317	11908330	TRUE	OK	17.0	0.0207	0.7656	0.9377	0.096	0.048	25.6	16.8	12.2	19.8	14.7	13.1
E074	chr18	11908330	11908331	TRUE	OK	6.4	0.05	0.1783	0.7093	0.769	0.384	8.5	1.0	6.7	6.9	6.3	9.1
E075	chr18	11908331	11908347	TRUE	OK	5.6	0.035	0.3247	0.7814	0.565	0.282	7.7	2.0	5.5	4.0	6.3	8.1
E076	chr18	11908347	11908348	FALSE	LOW_COUNTS_INDEP_FILTER	2.8	0.0517	0.1203	NA	NA	NA	2.6	1.0	2.2	2.0	3.1	6.1
E077	chr18	11908348	11908349	FALSE	LOW_COUNTS_INDEP_FILTER	2.8	0.0517	0.1203	NA	NA	NA	2.6	1.0	2.2	2.0	3.1	6.1
E078	chr18	11908349	11908350	FALSE	LOW_COUNTS_INDEP_FILTER	2.8	0.0517	0.1203	NA	NA	NA	2.6	1.0	2.2	2.0	3.1	6.1
E079	chr18	11908350	11908366	FALSE	LOW_COUNTS_INDEP_FILTER	2.8	0.0517	0.1203	NA	NA	NA	2.6	1.0	2.2	2.0	3.1	6.1
E080	chr18	11908366	11909223	TRUE	OK	18.0	0.0161	0.5017	0.8483	-0.231	-0.115	22.2	21.8	20.0	8.9	22.0	13.1
J081	chr18	11884627	11884878	TRUE	OK	50.4	0.00357	0.006103	0.2249	0.538	0.269	47.8	46.5	46.6	52.4	63.9	45.4
J082	chr18	11884627	11885675	TRUE	OK	46.6	0.0179	0.1338	0.6737	0.407	0.204	50.3	28.7	57.6	42.5	48.2	52.5
J083	chr18	11885043	11885675	TRUE	OK	34.9	0.0083	0.2122	0.7307	0.306	0.153	42.6	37.6	24.4	32.6	37.7	34.3
J084	chr18	11885816	11886498	TRUE	OK	84.7	0.00235	0.007965	0.2574	0.409	0.204	86.2	76.2	86.5	81.0	83.8	94.8
J085	chr18	11885816	11886916	TRUE	OK	9.0	0.0111	0.3696	0.7985	0.388	0.194	8.5	7.9	10.0	6.9	9.4	11.1
J086	chr18	11885912	11886498	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.0744	0.3201	NA	NA	NA	2.6	2.0	1.1	2.0	0.0	0.0
J087	chr18	11886621	11886712	TRUE	OK	63.8	0.00385	0.0005641	0.0538	0.631	0.315	61.4	50.5	61.0	77.1	76.5	56.5
J088	chr18	11886621	11886916	TRUE	OK	14.8	0.0209	0.002754	0.1454	1.189	0.594	12.8	10.9	7.8	21.7	11.5	24.2
J089	chr18	11886778	11886916	TRUE	OK	49.7	0.0036	0.03608	0.4821	0.411	0.206	53.7	45.5	45.5	49.4	59.7	44.4
J090	chr18	11886781	11886916	TRUE	OK	19.7	0.00638	0.3668	0.7976	0.269	0.134	22.2	15.8	22.2	20.8	22.0	15.1
J091	chr18	11887025	11888668	TRUE	OK	128.3	0.00264	0.001037	0.07997	0.450	0.225	142.4	109.9	119.7	131.4	132.0	134.2
J092	chr18	11887025	11889386	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J093	chr18	11888743	11889386	TRUE	OK	120.4	0.00194	5.56e-05	0.009662	0.537	0.268	124.5	104.9	109.7	134.4	121.5	127.1
J094	chr18	11889490	11893467	TRUE	OK	109.4	0.00205	5.397e-05	0.009423	0.561	0.281	105.8	96.0	104.2	129.5	107.9	113.0
J095	chr18	11891470	11893467	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.531	0.4544	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
J096	chr18	11893566	11895184	FALSE	LOW_COUNTS_INDEP_FILTER	1.1	0.226	0.5178	NA	NA	NA	1.7	3.0	0.0	0.0	0.0	2.0
J097	chr18	11893576	11895184	FALSE	LOW_COUNTS_INDEP_FILTER	2.5	0.0825	0.8328	NA	NA	NA	2.6	4.0	1.1	0.0	4.2	3.0
J098	chr18	11893576	11896983	TRUE	OK	108.6	0.00914	0.07551	0.5945	0.358	0.179	101.5	98.0	126.4	130.5	90.1	104.9
J099	chr18	11895277	11896983	FALSE	LOW_COUNTS_INDEP_FILTER	3.1	0.04	0.9404	NA	NA	NA	0.9	4.9	4.4	3.0	3.1	2.0
J100	chr18	11897120	11905737	FALSE	LOW_COUNTS_INDEP_FILTER	1.9	0.821	0.9636	NA	NA	NA	0.0	1.0	4.4	5.9	0.0	0.0
J101	chr18	11897131	11906202	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.148	0.008465	NA	NA	NA	0.0	0.0	0.0	1.0	1.0	4.0
J102	chr18	11897356	11897525	TRUE	OK	14.6	0.0106	0.01981	0.386	0.822	0.411	15.4	12.9	7.8	21.7	13.6	16.1
J103	chr18	11897356	11902266	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.501	0.6691	NA	NA	NA	0.0	0.0	1.1	0.0	0.0	0.0
J104	chr18	11897356	11905181	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J105	chr18	11897356	11905346	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J106	chr18	11897356	11905737	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J107	chr18	11897356	11905911	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.795	0.2614	NA	NA	NA	0.0	0.0	0.0	3.0	0.0	0.0
J108	chr18	11897356	11906202	TRUE	OK	123.0	0.00199	4.572e-05	0.00823	0.544	0.272	109.2	107.9	130.8	136.4	127.8	126.1
J109	chr18	11897356	11908200	TRUE	OK	8.2	0.0156	0.00151	0.1017	1.488	0.744	8.5	3.0	3.3	9.9	13.6	11.1
J110	chr18	11897620	11902266	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J111	chr18	11897620	11902584	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.268	0.8516	NA	NA	NA	0.9	0.0	0.0	1.0	0.0	0.0
J112	chr18	11897620	11905737	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.531	0.4544	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
J113	chr18	11897620	11906202	TRUE	OK	11.7	0.00841	0.05735	0.5529	0.722	0.361	9.4	9.9	11.1	13.8	14.7	11.1
J114	chr18	11902358	11905911	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J115	chr18	11902358	11906202	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.501	0.6691	NA	NA	NA	0.0	0.0	1.1	0.0	0.0	0.0
J116	chr18	11902856	11905737	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J117	chr18	11902856	11906202	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.501	0.6691	NA	NA	NA	0.0	0.0	1.1	0.0	0.0	0.0
J118	chr18	11905279	11905737	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J119	chr18	11905458	11905737	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J120	chr18	11905953	11906202	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J121	chr18	11906309	11907895	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.167	0.7528	NA	NA	NA	0.9	1.0	0.0	0.0	1.0	0.0
J122	chr18	11906309	11908200	TRUE	OK	134.1	0.00177	3.435e-05	0.006565	0.526	0.263	137.3	122.7	119.7	150.2	136.2	138.2

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000154889.16
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE