| << | < Prev Gene | TOP | Next Gene > | >> | |
| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Normalized Coverage Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr11 | 125442880 | 125445744 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.808 | 0.03549 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| E002 | chr11 | 125445744 | 125445752 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.188 | 1 | NA | NA | NA | 0.9 | 1.0 | 2.2 | 0.0 | 0.0 | 0.0 |
| E003 | chr11 | 125445752 | 125445760 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.148 | 1 | NA | NA | NA | 0.9 | 2.0 | 3.3 | 0.0 | 0.0 | 0.0 |
| E004 | chr11 | 125445760 | 125445764 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.148 | 1 | NA | NA | NA | 0.9 | 2.0 | 3.3 | 0.0 | 0.0 | 0.0 |
| E005 | chr11 | 125445764 | 125445846 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.9 | 0.0444 | 0.3788 | NA | NA | NA | 6.8 | 4.9 | 5.5 | 0.0 | 0.0 | 0.0 |
| E006 | chr11 | 125445846 | 125446111 | TRUE | OK | 12.0 | 0.0578 | 0.01138 | 0.305 | -23.802 | -11.901 | 28.1 | 12.9 | 31.0 | 0.0 | 0.0 | 0.0 |
| E007 | chr11 | 125448501 | 125448506 | TRUE | OK | 9.0 | 0.0625 | 0.03396 | 0.4723 | -23.342 | -11.671 | 23.9 | 8.9 | 21.1 | 0.0 | 0.0 | 0.0 |
| E008 | chr11 | 125448506 | 125448567 | TRUE | OK | 12.9 | 0.117 | 0.01567 | 0.3519 | -23.930 | -11.965 | 36.7 | 9.9 | 31.0 | 0.0 | 0.0 | 0.0 |
| E009 | chr11 | 125451410 | 125451520 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E010 | chr11 | 125452333 | 125452409 | TRUE | OK | 14.4 | 0.0252 | 0.002989 | 0.1521 | -24.107 | -12.053 | 32.4 | 19.8 | 34.4 | 0.0 | 0.0 | 0.0 |
| E011 | chr11 | 125452409 | 125452507 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.8 | 0.365 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E012 | chr11 | 125452507 | 125452825 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E013 | chr11 | 125452825 | 125453928 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E014 | chr11 | 125454129 | 125454210 | TRUE | OK | 15.1 | 0.0128 | 0.001827 | 0.1144 | -24.181 | -12.090 | 32.4 | 24.7 | 33.3 | 0.0 | 0.0 | 0.0 |
| E015 | chr11 | 125454210 | 125454357 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.8 | 0.365 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E016 | chr11 | 125455449 | 125455834 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.953 | 0.6163 | NA | NA | NA | 0.0 | 3.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E017 | chr11 | 125455834 | 125455951 | TRUE | OK | 19.8 | 0.0115 | 0.003523 | 0.1668 | -3.100 | -1.550 | 36.7 | 42.6 | 38.8 | 0.0 | 1.0 | 0.0 |
| E018 | chr11 | 125455951 | 125456009 | TRUE | OK | 15.1 | 0.0294 | 0.02657 | 0.4326 | -2.602 | -1.301 | 23.0 | 29.7 | 36.6 | 0.0 | 1.0 | 0.0 |
| E019 | chr11 | 125456009 | 125456106 | TRUE | OK | 15.4 | 0.0189 | 0.02021 | 0.3888 | -2.647 | -1.323 | 25.6 | 34.6 | 31.0 | 0.0 | 1.0 | 0.0 |
| E020 | chr11 | 125456106 | 125456286 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E021 | chr11 | 125460240 | 125460497 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.113 | 0.4005 | NA | NA | NA | 3.4 | 1.0 | 2.2 | 0.0 | 1.0 | 0.0 |
| E022 | chr11 | 125460497 | 125460666 | TRUE | OK | 23.2 | 0.0337 | 0.04864 | 0.5286 | -1.701 | -0.850 | 43.5 | 57.4 | 35.5 | 1.0 | 2.1 | 0.0 |
| E023 | chr11 | 125463249 | 125463483 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.8 | 0.365 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E024 | chr11 | 125463483 | 125463540 | TRUE | OK | 17.3 | 0.0295 | 0.001012 | 0.07894 | -24.436 | -12.218 | 40.1 | 40.6 | 23.3 | 0.0 | 0.0 | 0.0 |
| E025 | chr11 | 125463540 | 125463570 | TRUE | OK | 13.2 | 0.0236 | 0.004553 | 0.1927 | -23.965 | -11.982 | 26.4 | 32.7 | 20.0 | 0.0 | 0.0 | 0.0 |
| E026 | chr11 | 125469048 | 125469156 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E027 | chr11 | 125481533 | 125481597 | TRUE | OK | 13.9 | 0.0133 | 0.0296 | 0.45 | -2.488 | -1.244 | 27.3 | 30.7 | 24.4 | 1.0 | 0.0 | 0.0 |
| E028 | chr11 | 125481597 | 125481633 | TRUE | OK | 13.2 | 0.0128 | 0.03842 | 0.4924 | -2.392 | -1.196 | 24.7 | 25.7 | 27.7 | 1.0 | 0.0 | 0.0 |
| E029 | chr11 | 125481633 | 125481756 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E030 | chr11 | 125488926 | 125489350 | TRUE | OK | 11.6 | 0.0395 | 0.01036 | 0.2928 | -23.772 | -11.886 | 33.3 | 20.8 | 15.5 | 0.0 | 0.0 | 0.0 |
| E031 | chr11 | 125489350 | 125489466 | TRUE | OK | 8.2 | 0.0366 | 0.03667 | 0.4844 | -23.216 | -11.608 | 22.2 | 16.8 | 10.0 | 0.0 | 0.0 | 0.0 |
| E032 | chr11 | 125489466 | 125489540 | TRUE | OK | 20.8 | 0.0099 | 0.002158 | 0.1265 | -3.205 | -1.602 | 48.6 | 37.6 | 37.7 | 1.0 | 0.0 | 0.0 |
| E033 | chr11 | 125489540 | 125489822 | TRUE | OK | 31.3 | 0.00721 | 1.029e-06 | 0.0003673 | -25.540 | -12.769 | 67.4 | 56.4 | 64.3 | 0.0 | 0.0 | 0.0 |
| E034 | chr11 | 125495387 | 125495665 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.1 | 0.879 | 0.3603 | NA | NA | NA | 0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E035 | chr11 | 125495835 | 125496120 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.375 | 0.6284 | NA | NA | NA | 0.0 | 1.0 | 1.1 | 0.0 | 0.0 | 0.0 |
| E036 | chr11 | 125496120 | 125496122 | TRUE | OK | 12.6 | 0.0204 | 0.005572 | 0.2145 | -23.885 | -11.942 | 24.7 | 30.7 | 20.0 | 0.0 | 0.0 | 0.0 |
| E037 | chr11 | 125496122 | 125496218 | TRUE | OK | 13.5 | 0.0297 | 0.004396 | 0.1889 | -24.005 | -12.002 | 26.4 | 34.6 | 20.0 | 0.0 | 0.0 | 0.0 |
| E038 | chr11 | 125496218 | 125496277 | TRUE | OK | 9.7 | 0.0416 | 0.02147 | 0.3988 | -23.462 | -11.731 | 17.1 | 26.7 | 14.4 | 0.0 | 0.0 | 0.0 |
| E039 | chr11 | 125496277 | 125496310 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.1 | 0.244 | 1 | NA | NA | NA | 2.6 | 4.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E040 | chr11 | 125496310 | 125496317 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E041 | chr11 | 125557722 | 125557816 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.8 | 0.365 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E042 | chr11 | 125570283 | 125570442 | TRUE | OK | 9.4 | 0.0668 | 5.529e-16 | 1.328e-12 | 5.967 | 2.979 | 13.6 | 6.9 | 7.8 | 11.9 | 1.0 | 15.1 |
| E043 | chr11 | 125573455 | 125573574 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.363 | 0.06233 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| E044 | chr11 | 125592417 | 125592510 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.265 | 0.0001074 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 1.0 | 2.1 | 1.0 |
| E045 | chr11 | 125592510 | 125592568 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.777 | 0.002056 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 2.1 | 0.0 |
| J046 | chr11 | 125446111 | 125448501 | TRUE | OK | 8.8 | 0.0823 | 0.04112 | 0.5031 | -23.312 | -11.656 | 23.9 | 7.9 | 21.1 | 0.0 | 0.0 | 0.0 |
| J047 | chr11 | 125448567 | 125451410 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J048 | chr11 | 125448567 | 125452333 | TRUE | OK | 9.2 | 0.12 | 0.04588 | 0.5204 | -23.376 | -11.688 | 23.9 | 6.9 | 24.4 | 0.0 | 0.0 | 0.0 |
| J049 | chr11 | 125452409 | 125452507 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J050 | chr11 | 125452409 | 125454129 | TRUE | OK | 11.2 | 0.032 | 0.01161 | 0.3075 | -23.685 | -11.842 | 26.4 | 13.9 | 26.6 | 0.0 | 0.0 | 0.0 |
| J051 | chr11 | 125454210 | 125455834 | TRUE | OK | 10.4 | 0.0121 | 0.01209 | 0.3132 | -23.587 | -11.793 | 23.0 | 22.8 | 16.6 | 0.0 | 0.0 | 0.0 |
| J052 | chr11 | 125456106 | 125460497 | TRUE | OK | 9.8 | 0.071 | 0.1726 | 0.7053 | -1.901 | -0.950 | 13.6 | 28.7 | 15.5 | 0.0 | 1.0 | 0.0 |
| J053 | chr11 | 125456106 | 125481533 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J054 | chr11 | 125460666 | 125463483 | TRUE | OK | 14.0 | 0.017 | 0.002912 | 0.1498 | -24.076 | -12.038 | 33.3 | 30.7 | 20.0 | 0.0 | 0.0 | 0.0 |
| J055 | chr11 | 125460666 | 125481533 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.161 | 1 | NA | NA | NA | 0.9 | 1.0 | 1.1 | 0.0 | 0.0 | 0.0 |
| J056 | chr11 | 125463570 | 125469048 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J057 | chr11 | 125463570 | 125481533 | TRUE | OK | 11.4 | 0.0164 | 0.008419 | 0.2644 | -23.731 | -11.865 | 23.0 | 27.7 | 17.7 | 0.0 | 0.0 | 0.0 |
| J058 | chr11 | 125469156 | 125481533 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J059 | chr11 | 125481633 | 125489466 | TRUE | OK | 10.2 | 0.0132 | 0.1096 | 0.648 | -1.954 | -0.977 | 17.9 | 18.8 | 23.3 | 1.0 | 0.0 | 0.0 |
| J060 | chr11 | 125489822 | 125495387 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.1 | 0.624 | 0.3427 | NA | NA | NA | 0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J061 | chr11 | 125489822 | 125495835 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J062 | chr11 | 125489822 | 125496120 | TRUE | OK | 12.4 | 0.0203 | 0.005985 | 0.2223 | -23.862 | -11.931 | 24.7 | 30.7 | 18.8 | 0.0 | 0.0 | 0.0 |
| J063 | chr11 | 125489822 | 125557722 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J064 | chr11 | 125557816 | 125573455 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.573 | 0.3502 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J065 | chr11 | 125570442 | 125573455 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J066 | chr11 | 125573574 | 125592417 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| N067 | chr11 | 125569573 | 125570103 | FALSE | ALL_ZERO | 218.2 | NA | NA | NA | NA | NA | 243.1 | 248.4 | 252.7 | 189.8 | 183.3 | 191.7 |
| N068 | chr11 | 125569573 | 125572457 | FALSE | ALL_ZERO | 877.9 | NA | NA | NA | NA | NA | 937.4 | 909.6 | 873.5 | 955.7 | 659.9 | 931.0 |
| N069 | chr11 | 125569577 | 125572457 | TRUE | OK | 10.7 | 0.0718 | 4.38e-24 | 2.32e-20 | 7.738 | 3.856 | 9.4 | 10.9 | 5.5 | 10.9 | 10.5 | 17.1 |
| N070 | chr11 | 125570190 | 125572457 | FALSE | ALL_ZERO | 335.7 | NA | NA | NA | NA | NA | 394.9 | 367.2 | 374.7 | 282.6 | 266.1 | 328.8 |
| N071 | chr11 | 125572569 | 125575250 | TRUE | OK | 29.8 | 0.00651 | 5.272e-49 | 1.159e-44 | 30.069 | 7.849 | 32.4 | 31.7 | 35.5 | 22.7 | 21.0 | 35.3 |
| N072 | chr11 | 125572569 | 125575262 | FALSE | ALL_ZERO | 1643.7 | NA | NA | NA | NA | NA | 1755.4 | 1671.8 | 1768.1 | 1695.9 | 1319.9 | 1651.2 |
| N073 | chr11 | 125572569 | 125575304 | TRUE | OK | 27.3 | 0.00987 | 1.275e-53 | 3.504e-49 | 30.520 | 8.040 | 29.9 | 19.8 | 29.9 | 25.7 | 26.2 | 32.3 |
| N074 | chr11 | 125572569 | 125576254 | TRUE | OK | 19.5 | 0.0198 | 4.122e-35 | 3.699e-31 | 30.090 | 8.125 | 27.3 | 14.8 | 25.5 | 18.8 | 10.5 | 20.2 |
| N075 | chr11 | 125575408 | 125575802 | TRUE | OK | 19.7 | 0.00752 | 3.126e-35 | 2.924e-31 | 8.432 | 4.158 | 25.6 | 21.8 | 24.4 | 18.8 | 11.5 | 16.1 |
| N076 | chr11 | 125575408 | 125576254 | FALSE | ALL_ZERO | 1662.0 | NA | NA | NA | NA | NA | 1818.5 | 1734.1 | 1763.7 | 1672.2 | 1378.5 | 1604.8 |
| N077 | chr11 | 125575931 | 125576254 | TRUE | OK | 18.3 | 0.269 | 6.307e-10 | 5.426e-07 | 6.716 | 3.344 | 17.9 | 13.9 | 24.4 | 21.7 | 19.9 | 12.1 |
| N078 | chr11 | 125576315 | 125577503 | FALSE | ALL_ZERO | 1873.2 | NA | NA | NA | NA | NA | 2134.1 | 1953.9 | 1994.3 | 1847.1 | 1557.7 | 1752.1 |
| N079 | chr11 | 125577570 | 125578132 | FALSE | ALL_ZERO | 1777.9 | NA | NA | NA | NA | NA | 2131.6 | 1869.7 | 1963.2 | 1691.9 | 1386.9 | 1624.0 |
| N080 | chr11 | 125578257 | 125578948 | FALSE | ALL_ZERO | 1675.6 | NA | NA | NA | NA | NA | 1947.3 | 1755.9 | 1946.6 | 1652.4 | 1214.1 | 1537.3 |
| N081 | chr11 | 125578257 | 125580092 | TRUE | OK | 26.4 | 0.00718 | 7.327e-46 | 1.239e-41 | 30.055 | 7.919 | 35.0 | 25.7 | 28.8 | 23.7 | 21.0 | 24.2 |
| N082 | chr11 | 125579068 | 125580092 | FALSE | ALL_ZERO | 1277.1 | NA | NA | NA | NA | NA | 1493.6 | 1385.7 | 1277.0 | 1302.6 | 971.1 | 1232.6 |
| N083 | chr11 | 125580204 | 125581210 | FALSE | ALL_ZERO | 1345.7 | NA | NA | NA | NA | NA | 1468.8 | 1387.7 | 1556.4 | 1326.3 | 1140.8 | 1194.3 |
| N084 | chr11 | 125580204 | 125582345 | TRUE | OK | 11.9 | 0.136 | 2.183e-10 | 2.077e-07 | 5.351 | 2.671 | 16.2 | 13.9 | 13.3 | 6.9 | 5.2 | 16.1 |
| N085 | chr11 | 125581322 | 125582345 | FALSE | ALL_ZERO | 1327.7 | NA | NA | NA | NA | NA | 1516.6 | 1424.3 | 1506.5 | 1347.0 | 1028.7 | 1142.9 |
| N086 | chr11 | 125582420 | 125583520 | FALSE | ALL_ZERO | 1344.1 | NA | NA | NA | NA | NA | 1444.1 | 1392.7 | 1498.8 | 1263.0 | 1247.6 | 1218.5 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000149557.13 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |