Normalized Counts Table (ENSG00000129422.14)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr8	17643794	17643798	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.307	0.9088	NA	NA	NA	0.9	2.0	0.0	0.0	2.1	0.0
E002	chr8	17643798	17643803	FALSE	LOW_COUNTS_INDEP_FILTER	2.5	0.131	0.8623	NA	NA	NA	1.7	3.0	3.3	2.0	5.2	0.0
E003	chr8	17643803	17645661	TRUE	OK	764.8	0.00908	0.01153	0.3067	0.414	0.207	773.6	762.1	878.0	761.0	729.1	684.9
E004	chr8	17645661	17645868	TRUE	OK	162.0	0.00323	0.6213	0.8909	0.078	0.039	180.0	181.1	175.1	162.1	118.4	155.3
E005	chr8	17645868	17645925	TRUE	OK	101.6	0.00358	0.3721	0.7995	0.153	0.077	108.3	108.9	112.0	114.6	72.3	93.8
E006	chr8	17645925	17645975	TRUE	OK	114.6	0.00563	0.326	0.7819	0.183	0.092	126.2	123.7	117.5	127.5	79.6	113.0
E007	chr8	17645975	17646139	TRUE	OK	168.7	0.0102	0.1599	0.696	0.281	0.140	203.9	160.3	161.8	177.9	127.8	180.6
E008	chr8	17646981	17647003	TRUE	OK	113.3	0.00951	0.2822	0.7636	0.227	0.113	133.9	108.9	115.3	108.7	82.8	130.1
E009	chr8	17647003	17647079	TRUE	OK	135.3	0.00594	0.05106	0.5363	0.330	0.165	150.1	117.8	147.4	132.4	110.0	154.3
E010	chr8	17647079	17647278	TRUE	OK	3.3	0.0418	0.03109	0.4578	1.654	0.827	2.6	1.0	2.2	6.9	2.1	5.0
E011	chr8	17649845	17649879	TRUE	OK	98.5	0.00476	0.06044	0.5608	0.324	0.162	102.4	86.1	114.2	98.8	75.4	114.0
E012	chr8	17649879	17649962	TRUE	OK	107.8	0.00326	0.6778	0.9103	0.066	0.033	122.0	101.9	134.1	94.9	86.9	106.9
E013	chr8	17651602	17651764	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.303	0.5112	NA	NA	NA	0.0	2.0	0.0	1.0	2.1	0.0
E014	chr8	17653185	17653281	TRUE	OK	104.3	0.00284	0.8491	0.9618	-0.025	-0.012	123.7	104.9	126.4	91.9	84.8	93.8
E015	chr8	17653424	17653498	TRUE	OK	98.2	0.00722	0.7132	0.9214	0.070	0.035	114.3	100.0	110.9	89.9	97.4	76.7
E016	chr8	17653498	17654560	TRUE	OK	15.8	0.0111	0.2121	0.7307	0.436	0.218	19.6	10.9	15.5	17.8	12.6	18.2
E017	chr8	17654560	17654563	TRUE	OK	69.2	0.00899	0.665	0.9061	0.098	0.049	75.1	67.3	85.4	71.2	69.1	47.4
E018	chr8	17654563	17654666	TRUE	OK	109.7	0.00933	0.3538	0.7928	0.201	0.100	104.9	113.8	131.9	132.4	94.3	80.7
E019	chr8	17654666	17655025	TRUE	OK	9.2	0.0179	0.1052	0.6422	0.744	0.372	9.4	6.9	7.8	11.9	5.2	14.1
E020	chr8	17655862	17655870	TRUE	OK	84.5	0.0108	0.5139	0.853	0.160	0.080	74.2	92.1	107.5	103.8	62.9	66.6
E021	chr8	17655870	17656018	TRUE	OK	154.5	0.00435	0.262	0.7543	0.183	0.092	157.8	165.3	174.0	174.9	107.9	147.3
E022	chr8	17656018	17656025	TRUE	OK	94.9	0.00734	0.2261	0.7384	0.248	0.124	104.1	101.0	93.1	106.7	64.9	99.9
E023	chr8	17656025	17656065	TRUE	OK	112.5	0.00666	0.1271	0.6672	0.291	0.146	119.4	117.8	112.0	129.5	78.6	118.0
E024	chr8	17663979	17664081	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.359	0.8613	NA	NA	NA	0.0	1.0	0.0	1.0	0.0	0.0
E025	chr8	17674667	17674734	TRUE	OK	11.5	0.0351	0.348	0.7905	0.459	0.229	9.4	6.9	17.7	17.8	6.3	11.1
E026	chr8	17674734	17674836	TRUE	OK	13.1	0.0119	0.4033	0.8117	0.320	0.160	12.8	10.9	16.6	15.8	13.6	9.1
E027	chr8	17674836	17675015	TRUE	OK	20.0	0.00872	0.08943	0.6195	0.528	0.264	15.4	19.8	22.2	22.7	23.0	17.1
E028	chr8	17675185	17675216	TRUE	OK	126.7	0.00719	0.008807	0.2703	0.484	0.242	123.7	128.7	117.5	139.3	98.5	152.3
E029	chr8	17675216	17675252	TRUE	OK	142.2	0.00761	0.03128	0.4587	0.402	0.201	149.3	144.5	133.0	158.1	106.8	161.4
E030	chr8	17675252	17675264	FALSE	LOW_COUNTS_INDEP_FILTER	2.9	0.0573	0.0476	NA	NA	NA	0.9	2.0	2.2	3.0	2.1	7.1
E031	chr8	17675987	17676008	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.417	0.8373	NA	NA	NA	0.0	0.0	2.2	1.0	0.0	0.0
E032	chr8	17676008	17676142	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.228	0.7725	NA	NA	NA	0.0	0.0	2.2	1.0	1.0	0.0
E033	chr8	17676142	17676210	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.351	0.1804	NA	NA	NA	0.0	0.0	0.0	1.0	1.0	0.0
E034	chr8	17676275	17676414	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.233	0.4519	NA	NA	NA	0.0	1.0	0.0	0.0	1.0	1.0
E035	chr8	17676414	17676493	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.756	0.4775	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
E036	chr8	17676493	17676494	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.756	0.4775	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	1.0
E037	chr8	17684327	17684334	TRUE	OK	107.9	0.007	0.06865	0.5799	0.351	0.175	116.0	106.9	105.3	125.5	76.5	117.0
E038	chr8	17684334	17684353	TRUE	OK	116.2	0.00807	0.09849	0.6333	0.331	0.165	126.2	117.8	112.0	133.4	81.7	126.1
E039	chr8	17684353	17684474	TRUE	OK	158.8	0.00642	0.09757	0.632	0.290	0.145	173.2	161.3	159.6	165.0	117.3	176.5
E040	chr8	17684474	17684542	TRUE	OK	105.8	0.00823	0.7531	0.9338	0.074	0.037	128.8	114.8	106.4	103.8	72.3	108.9
E041	chr8	17691304	17691364	TRUE	OK	20.3	0.00816	0.005872	0.2204	0.844	0.422	13.6	16.8	21.1	21.7	24.1	24.2
E042	chr8	17691968	17692141	TRUE	OK	13.5	0.0484	0.3368	0.7861	0.563	0.282	11.9	11.9	14.4	22.7	4.2	16.1
E043	chr8	17692141	17692217	TRUE	OK	52.3	0.0226	0.1858	0.7146	0.448	0.224	49.5	57.4	46.6	68.2	29.3	62.5
E044	chr8	17692217	17692226	TRUE	OK	17.2	0.0286	0.3597	0.795	0.388	0.194	10.2	20.8	21.1	19.8	9.4	22.2
E045	chr8	17693251	17693338	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.151	0.5017	NA	NA	NA	0.9	1.0	0.0	1.0	0.0	2.0
E046	chr8	17697256	17697670	TRUE	OK	10.0	0.0293	0.03839	0.4924	1.015	0.507	6.0	9.9	7.8	11.9	6.3	18.2
E047	chr8	17708766	17708968	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.378	0.8476	NA	NA	NA	1.7	0.0	0.0	0.0	0.0	1.0
E048	chr8	17713213	17713252	TRUE	OK	16.4	0.0108	0.0001179	0.01733	-1.424	-0.712	29.9	20.8	25.5	6.9	7.3	8.1
E049	chr8	17715766	17715901	TRUE	OK	28.7	0.0251	3.761e-05	0.007036	-1.551	-0.776	53.7	27.7	54.3	15.8	11.5	9.1
E050	chr8	17716472	17716590	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.767	0.482	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
E051	chr8	17721711	17721989	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.737	0.4682	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	0.0
E052	chr8	17721989	17722221	FALSE	LOW_COUNTS_INDEP_FILTER	0.6	0.495	0.8326	NA	NA	NA	1.7	0.0	0.0	2.0	0.0	0.0
E053	chr8	17722420	17722568	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.709	0.7099	NA	NA	NA	0.0	0.0	1.1	0.0	0.0	0.0
E054	chr8	17722568	17722575	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.709	0.7099	NA	NA	NA	0.0	0.0	1.1	0.0	0.0	0.0
E055	chr8	17722575	17722639	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.709	0.7099	NA	NA	NA	0.0	0.0	1.1	0.0	0.0	0.0
E056	chr8	17723240	17723671	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.767	0.482	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
E057	chr8	17723671	17723833	TRUE	OK	18.4	0.0262	4.48e-06	0.001259	-1.992	-0.996	34.1	20.8	37.7	10.9	3.1	4.0
E058	chr8	17723833	17724010	FALSE	LOW_COUNTS_INDEP_FILTER	0.1	0.846	0.7264	NA	NA	NA	0.9	0.0	0.0	0.0	0.0	0.0
E059	chr8	17724101	17724162	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.766	0.7147	NA	NA	NA	0.0	1.0	0.0	0.0	0.0	0.0
E060	chr8	17734202	17734247	FALSE	LOW_COUNTS_INDEP_FILTER	1.8	0.0764	0.1137	NA	NA	NA	1.7	4.0	3.3	2.0	0.0	0.0
E061	chr8	17743603	17743799	TRUE	OK	29.5	0.0323	8.005e-05	0.01286	-1.553	-0.776	49.5	31.7	58.8	12.8	5.2	19.2
E062	chr8	17753716	17755011	TRUE	OK	133.5	0.0152	3.182e-20	1.307e-16	-2.276	-1.138	202.2	212.8	266.1	45.5	21.0	53.5
E063	chr8	17755011	17755437	TRUE	OK	47.4	0.00621	1.19e-12	1.705e-09	-1.703	-0.851	69.1	71.3	88.7	26.7	8.4	20.2
E064	chr8	17755437	17755620	TRUE	OK	25.7	0.0126	2.036e-08	1.21e-05	-1.875	-0.938	45.2	35.6	46.6	15.8	3.1	8.1
E065	chr8	17755620	17755961	TRUE	OK	37.6	0.00979	6.529e-07	0.0002494	-1.341	-0.670	59.7	49.5	63.2	27.7	9.4	16.1
E066	chr8	17755961	17755981	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E067	chr8	17758139	17758204	FALSE	LOW_COUNTS_INDEP_FILTER	2.1	0.385	0.8009	NA	NA	NA	3.4	1.0	2.2	5.9	0.0	0.0
E068	chr8	17770428	17770581	FALSE	LOW_COUNTS_INDEP_FILTER	0.1	0.846	0.7264	NA	NA	NA	0.9	0.0	0.0	0.0	0.0	0.0
E069	chr8	17780876	17780962	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E070	chr8	17800597	17800668	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E071	chr8	17800668	17800917	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J072	chr8	17646139	17646981	TRUE	OK	88.1	0.00727	0.1852	0.7141	0.264	0.132	104.1	84.1	86.5	88.9	66.0	98.9
J073	chr8	17647079	17649845	TRUE	OK	83.6	0.00346	0.007824	0.2549	0.447	0.224	78.5	73.2	95.3	88.9	64.9	100.9
J074	chr8	17649962	17651602	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J075	chr8	17649962	17653185	TRUE	OK	75.0	0.00855	0.7073	0.9196	-0.080	-0.040	95.5	67.3	96.4	58.3	56.6	75.7
J076	chr8	17653281	17653424	TRUE	OK	61.2	0.00419	0.6213	0.8909	-0.090	-0.045	75.9	66.3	69.8	51.4	56.6	47.4
J077	chr8	17653498	17654560	TRUE	OK	64.9	0.0117	0.5363	0.8609	0.153	0.077	69.9	64.3	75.4	68.2	68.1	43.4
J078	chr8	17654666	17655862	TRUE	OK	79.6	0.0136	0.6063	0.8858	0.139	0.069	67.4	89.1	103.1	97.8	59.7	60.5
J079	chr8	17656065	17663979	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.538	0.4499	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	0.0
J080	chr8	17656065	17675185	TRUE	OK	89.0	0.0059	0.07547	0.5945	0.339	0.170	92.1	93.0	86.5	99.8	62.9	99.9
J081	chr8	17664081	17675185	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J082	chr8	17675015	17675185	TRUE	OK	14.2	0.00799	0.1866	0.715	0.466	0.233	11.9	13.9	15.5	11.9	15.7	16.1
J083	chr8	17675252	17675987	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J084	chr8	17675252	17676008	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J085	chr8	17675252	17676275	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.538	0.6903	NA	NA	NA	0.0	1.0	0.0	0.0	0.0	0.0
J086	chr8	17675252	17684327	TRUE	OK	103.2	0.00678	0.04957	0.5315	0.378	0.189	107.5	102.9	100.9	120.6	72.3	115.0
J087	chr8	17684542	17691304	TRUE	OK	15.4	0.00771	0.02707	0.4356	0.749	0.375	11.1	13.9	15.5	16.8	19.9	15.1
J088	chr8	17684542	17691968	TRUE	OK	5.3	0.0209	0.3675	0.7979	-0.511	-0.255	6.0	4.9	10.0	5.9	1.0	4.0
J089	chr8	17684542	17692141	TRUE	OK	29.9	0.0374	0.6757	0.9095	0.203	0.101	35.0	37.6	22.2	36.6	14.7	33.3
J090	chr8	17684542	17693251	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J091	chr8	17684542	17697256	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J092	chr8	17684542	17713213	TRUE	OK	14.0	0.00907	0.0002895	0.03403	-1.397	-0.699	25.6	16.8	22.2	6.9	6.3	6.1
J093	chr8	17691364	17691968	FALSE	LOW_COUNTS_INDEP_FILTER	2.2	0.292	0.7412	NA	NA	NA	4.3	2.0	0.0	2.0	0.0	5.0
J094	chr8	17708968	17713213	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.584	0.4641	NA	NA	NA	1.7	0.0	0.0	0.0	0.0	0.0
J095	chr8	17713252	17715766	TRUE	OK	13.5	0.0167	0.0003456	0.03839	-1.534	-0.767	26.4	13.9	23.3	4.9	6.3	6.1
J096	chr8	17715901	17716472	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J097	chr8	17715901	17721711	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J098	chr8	17715901	17722420	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J099	chr8	17715901	17722568	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J100	chr8	17715901	17723671	TRUE	OK	11.6	0.0315	0.0002279	0.02871	-1.898	-0.949	24.7	11.9	21.1	6.9	2.1	3.0
J101	chr8	17715901	17743603	TRUE	OK	7.2	0.0747	0.00865	0.2682	-1.965	-0.982	10.2	4.9	21.1	3.0	1.0	3.0
J102	chr8	17723833	17724101	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J103	chr8	17723833	17734202	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.0877	0.01568	NA	NA	NA	0.9	3.0	3.3	0.0	0.0	0.0
J104	chr8	17723833	17743603	TRUE	OK	7.3	0.0251	0.002498	0.1379	-1.752	-0.876	11.9	6.9	16.6	4.9	2.1	1.0
J105	chr8	17724162	17743603	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.538	0.6903	NA	NA	NA	0.0	1.0	0.0	0.0	0.0	0.0
J106	chr8	17743799	17753716	TRUE	OK	15.7	0.0147	5.229e-05	0.00917	-1.603	-0.801	26.4	21.8	26.6	4.0	3.1	12.1
J107	chr8	17755961	17758139	FALSE	LOW_COUNTS_INDEP_FILTER	1.4	0.0761	0.2385	NA	NA	NA	3.4	1.0	2.2	2.0	0.0	0.0
J108	chr8	17755961	17780876	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J109	chr8	17755961	17800597	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J110	chr8	17758204	17770428	FALSE	LOW_COUNTS_INDEP_FILTER	0.1	0.589	0.7019	NA	NA	NA	0.9	0.0	0.0	0.0	0.0	0.0

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000129422.14
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE