| << | < Prev Gene | TOP | Next Gene > | >> | |
| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr5 | 136028987 | 136028990 | TRUE | OK | 335.3 | 0.0101 | 0.2908 | 0.7672 | -0.177 | -0.089 | 355.0 | 261.0 | 239.0 | 436.0 | 293.0 | 444.0 |
| E002 | chr5 | 136028990 | 136029138 | TRUE | OK | 22293.7 | 0.0145 | 0.3695 | 0.7985 | -0.155 | -0.077 | 21943.0 | 17670.0 | 16187.0 | 31619.0 | 18839.0 | 28382.0 |
| E003 | chr5 | 136029138 | 136029189 | TRUE | OK | 23651.3 | 0.0141 | 0.3447 | 0.789 | -0.163 | -0.081 | 23393.0 | 18696.0 | 17270.0 | 33313.0 | 20090.0 | 30075.0 |
| E004 | chr5 | 136033762 | 136033861 | TRUE | OK | 28617.2 | 0.0121 | 0.3175 | 0.7782 | -0.164 | -0.082 | 28384.0 | 22381.0 | 21004.0 | 39423.0 | 25106.0 | 36478.0 |
| E005 | chr5 | 136044057 | 136044122 | TRUE | OK | 24041.2 | 0.0109 | 0.3999 | 0.81 | -0.134 | -0.067 | 24754.0 | 18217.0 | 16939.0 | 33065.0 | 21970.0 | 30368.0 |
| E006 | chr5 | 136044781 | 136044870 | TRUE | OK | 88.8 | 0.025 | 0.1674 | 0.7021 | -0.418 | -0.209 | 122.0 | 80.0 | 51.0 | 102.0 | 71.0 | 117.0 |
| E007 | chr5 | 136045744 | 136046334 | TRUE | OK | 398.4 | 0.00767 | 1.094e-12 | 1.582e-09 | 1.166 | 0.583 | 180.0 | 173.0 | 174.0 | 692.0 | 487.0 | 673.0 |
| E008 | chr5 | 136046334 | 136046440 | TRUE | OK | 29282.9 | 0.00655 | 0.3144 | 0.777 | -0.129 | -0.065 | 28883.0 | 21955.0 | 21628.0 | 38398.0 | 28409.0 | 37322.0 |
| E009 | chr5 | 136046440 | 136046495 | TRUE | OK | 25503.1 | 0.00515 | 0.3401 | 0.7871 | -0.109 | -0.055 | 24881.0 | 19061.0 | 18736.0 | 32928.0 | 25414.0 | 32711.0 |
| E010 | chr5 | 136046495 | 136046556 | TRUE | OK | 1239.1 | 0.0125 | 0.03845 | 0.4924 | -0.394 | -0.197 | 1527.0 | 1104.0 | 838.0 | 1380.0 | 1108.0 | 1572.0 |
| E011 | chr5 | 136046556 | 136046850 | TRUE | OK | 2094.5 | 0.0133 | 0.002129 | 0.1255 | -0.586 | -0.293 | 2650.0 | 2044.0 | 1576.0 | 2254.0 | 1646.0 | 2562.0 |
| E012 | chr5 | 136046850 | 136047015 | TRUE | OK | 34525.4 | 0.00817 | 0.2609 | 0.7538 | -0.158 | -0.079 | 33839.0 | 26887.0 | 25471.0 | 46370.0 | 32266.0 | 43436.0 |
| E013 | chr5 | 136047015 | 136047273 | TRUE | OK | 282.8 | 0.0273 | 0.0002273 | 0.02867 | 1.120 | 0.560 | 126.0 | 126.0 | 130.0 | 598.0 | 273.0 | 440.0 |
| E014 | chr5 | 136047273 | 136047323 | TRUE | OK | 20913.0 | 0.0134 | 0.2141 | 0.732 | -0.217 | -0.108 | 21305.0 | 16887.0 | 15450.0 | 29463.0 | 17758.0 | 25522.0 |
| E015 | chr5 | 136047323 | 136047352 | TRUE | OK | 19956.6 | 0.0123 | 0.136 | 0.6754 | -0.254 | -0.127 | 20347.0 | 16374.0 | 15145.0 | 27836.0 | 16973.0 | 23891.0 |
| E016 | chr5 | 136047352 | 136047417 | TRUE | OK | 26580.4 | 0.00608 | 0.1297 | 0.6695 | -0.188 | -0.094 | 25408.0 | 21420.0 | 20217.0 | 35342.0 | 25196.0 | 32592.0 |
| E017 | chr5 | 136047417 | 136047420 | TRUE | OK | 19176.4 | 0.0028 | 0.08288 | 0.6079 | -0.150 | -0.075 | 18034.0 | 15193.0 | 14532.0 | 24490.0 | 19463.0 | 23731.0 |
| E018 | chr5 | 136047420 | 136048252 | TRUE | OK | 262.2 | 0.00872 | 0.7259 | 0.9255 | -0.047 | -0.023 | 224.0 | 219.0 | 185.0 | 358.0 | 238.0 | 354.0 |
| E019 | chr5 | 136048252 | 136048349 | TRUE | OK | 119.5 | 0.0219 | 0.006851 | 0.2385 | -0.712 | -0.356 | 136.0 | 146.0 | 90.0 | 118.0 | 81.0 | 154.0 |
| E020 | chr5 | 136048349 | 136049438 | TRUE | OK | 419.9 | 0.00645 | 2.016e-05 | 0.004293 | 0.634 | 0.317 | 237.0 | 268.0 | 227.0 | 666.0 | 501.0 | 612.0 |
| E021 | chr5 | 136049438 | 136049515 | TRUE | OK | 28049.7 | 0.00239 | 0.1884 | 0.7162 | -0.105 | -0.052 | 25621.0 | 21957.0 | 20934.0 | 36107.0 | 29232.0 | 34896.0 |
| E022 | chr5 | 136049515 | 136049580 | TRUE | OK | 29665.3 | 0.00148 | 0.3183 | 0.7786 | -0.064 | -0.032 | 26140.0 | 23017.0 | 22081.0 | 37486.0 | 32274.0 | 37256.0 |
| E023 | chr5 | 136049580 | 136049807 | TRUE | OK | 117.0 | 0.00328 | 0.4141 | 0.8159 | -0.118 | -0.059 | 104.0 | 105.0 | 80.0 | 130.0 | 146.0 | 138.0 |
| E024 | chr5 | 136052906 | 136053017 | TRUE | OK | 34463.6 | 0.00181 | 0.4207 | 0.8185 | -0.055 | -0.027 | 31393.0 | 26641.0 | 24674.0 | 44615.0 | 36976.0 | 43082.0 |
| E025 | chr5 | 136053017 | 136053119 | TRUE | OK | 33558.6 | 0.00351 | 0.1988 | 0.7228 | -0.122 | -0.061 | 31845.0 | 26387.0 | 24417.0 | 44469.0 | 34360.0 | 40708.0 |
| E026 | chr5 | 136053942 | 136054080 | TRUE | OK | 33933.1 | 0.00326 | 0.101 | 0.6365 | -0.153 | -0.076 | 32804.0 | 26667.0 | 25034.0 | 44529.0 | 34844.0 | 40611.0 |
| E027 | chr5 | 136054674 | 136054715 | TRUE | OK | 534.8 | 0.00484 | 0.001389 | 0.09622 | 0.408 | 0.204 | 335.0 | 364.0 | 339.0 | 780.0 | 703.0 | 674.0 |
| E028 | chr5 | 136054715 | 136054818 | TRUE | OK | 33636.6 | 0.00133 | 0.01089 | 0.2992 | -0.155 | -0.077 | 31900.0 | 26324.0 | 25458.0 | 42582.0 | 36159.0 | 40024.0 |
| E029 | chr5 | 136054818 | 136054861 | TRUE | OK | 24752.2 | 0.000941 | 0.01798 | 0.3721 | -0.122 | -0.061 | 23569.0 | 19302.0 | 18172.0 | 31252.0 | 27162.0 | 29564.0 |
| E030 | chr5 | 136054861 | 136055189 | TRUE | OK | 94.5 | 0.00257 | 0.002772 | 0.1458 | -0.441 | -0.220 | 93.0 | 91.0 | 81.0 | 108.0 | 92.0 | 104.0 |
| E031 | chr5 | 136055189 | 136055392 | TRUE | OK | 80.4 | 0.00874 | 0.0009146 | 0.07396 | -0.666 | -0.333 | 96.0 | 82.0 | 68.0 | 77.0 | 62.0 | 102.0 |
| E032 | chr5 | 136055498 | 136055679 | TRUE | OK | 77.1 | 0.0226 | 0.03514 | 0.4777 | -0.578 | -0.289 | 101.0 | 63.0 | 66.0 | 91.0 | 49.0 | 99.0 |
| E033 | chr5 | 136055679 | 136055816 | TRUE | OK | 34333.1 | 0.000768 | 0.1382 | 0.6777 | -0.069 | -0.034 | 31996.0 | 26177.0 | 24726.0 | 43644.0 | 38810.0 | 41241.0 |
| E034 | chr5 | 136056448 | 136056530 | TRUE | OK | 10.7 | 0.0141 | 0.644 | 0.8991 | 0.197 | 0.098 | 9.0 | 5.0 | 9.0 | 13.0 | 16.0 | 12.0 |
| E035 | chr5 | 136056664 | 136056795 | TRUE | OK | 37092.3 | 0.000767 | 0.1556 | 0.693 | 0.066 | 0.033 | 32789.0 | 27256.0 | 25156.0 | 47285.0 | 45228.0 | 45219.0 |
| E036 | chr5 | 136058766 | 136058848 | TRUE | OK | 9.9 | 0.0234 | 0.07782 | 0.5988 | -0.795 | -0.397 | 8.0 | 10.0 | 13.0 | 12.0 | 5.0 | 11.0 |
| E037 | chr5 | 136058848 | 136058919 | TRUE | OK | 12.3 | 0.0153 | 0.01984 | 0.3862 | -0.922 | -0.461 | 10.0 | 13.0 | 17.0 | 10.0 | 11.0 | 12.0 |
| E038 | chr5 | 136058919 | 136059089 | TRUE | OK | 416.2 | 0.00165 | 4.141e-42 | 6.068e-38 | 1.315 | 0.658 | 175.0 | 171.0 | 163.0 | 705.0 | 621.0 | 645.0 |
| E039 | chr5 | 136059089 | 136059145 | TRUE | OK | 29829.0 | 0.000907 | 0.2436 | 0.7467 | 0.059 | 0.030 | 26394.0 | 21898.0 | 20343.0 | 37590.0 | 36727.0 | 36297.0 |
| E040 | chr5 | 136059145 | 136059185 | TRUE | OK | 28209.0 | 0.00164 | 0.09772 | 0.6322 | 0.113 | 0.057 | 24900.0 | 20355.0 | 18409.0 | 35841.0 | 35620.0 | 34427.0 |
| E041 | chr5 | 136059185 | 136059214 | TRUE | OK | 24410.2 | 0.00195 | 0.3999 | 0.81 | 0.063 | 0.031 | 22085.0 | 17718.0 | 16361.0 | 30408.0 | 30777.0 | 29402.0 |
| E042 | chr5 | 136060833 | 136060936 | TRUE | OK | 33014.1 | 0.00213 | 0.4286 | 0.8215 | 0.062 | 0.031 | 29574.0 | 24070.0 | 22337.0 | 40950.0 | 41953.0 | 39512.0 |
| E043 | chr5 | 136061189 | 136061499 | TRUE | OK | 458.8 | 0.00163 | 7.321e-13 | 1.087e-09 | 0.646 | 0.323 | 323.0 | 265.0 | 215.0 | 669.0 | 635.0 | 645.0 |
| E044 | chr5 | 136061499 | 136061536 | TRUE | OK | 26071.2 | 0.00274 | 0.5111 | 0.852 | 0.060 | 0.030 | 23312.0 | 19142.0 | 17564.0 | 32071.0 | 33746.0 | 30812.0 |
| E045 | chr5 | 136061536 | 136061579 | TRUE | OK | 24982.7 | 0.00259 | 0.6302 | 0.8943 | 0.043 | 0.021 | 22413.0 | 18333.0 | 17111.0 | 30714.0 | 32138.0 | 29389.0 |
| E046 | chr5 | 136062662 | 136062687 | TRUE | OK | 24416.1 | 0.00269 | 0.9734 | 0.9943 | -0.001 | -0.000 | 22120.0 | 18135.0 | 17217.0 | 29543.0 | 31221.0 | 28444.0 |
| E047 | chr5 | 136063185 | 136063372 | TRUE | OK | 43874.3 | 0.00406 | 0.5784 | 0.8761 | 0.062 | 0.031 | 38853.0 | 31956.0 | 30155.0 | 53827.0 | 57809.0 | 50852.0 |
| E048 | chr5 | 136063372 | 136063665 | TRUE | OK | 56858.5 | 0.0112 | 0.1078 | 0.6454 | 0.294 | 0.147 | 47121.0 | 40143.0 | 33913.0 | 69529.0 | 83939.0 | 66410.0 |
| E049 | chr5 | 136063665 | 136063803 | TRUE | OK | 17856.6 | 0.0127 | 0.07959 | 0.602 | 0.347 | 0.173 | 14600.0 | 12190.0 | 9787.0 | 21716.0 | 28123.0 | 20670.0 |
| E050 | chr5 | 136063803 | 136063815 | TRUE | OK | 1947.6 | 0.0141 | 0.2119 | 0.7305 | 0.280 | 0.140 | 1554.0 | 1338.0 | 1164.0 | 2283.0 | 3188.0 | 2131.0 |
| E051 | chr5 | 136063815 | 136063816 | TRUE | OK | 219.9 | 0.00202 | 0.6066 | 0.8859 | 0.059 | 0.030 | 198.0 | 155.0 | 152.0 | 302.0 | 255.0 | 261.0 |
| E052 | chr5 | 136063816 | 136063818 | TRUE | OK | 215.2 | 0.00168 | 0.7558 | 0.9347 | 0.035 | 0.017 | 194.0 | 152.0 | 153.0 | 285.0 | 250.0 | 260.0 |
| J053 | chr5 | 136029189 | 136033762 | TRUE | OK | 19420.1 | 0.0139 | 0.2545 | 0.7512 | -0.200 | -0.100 | 19408.0 | 15679.0 | 14389.0 | 27009.0 | 16335.0 | 24479.0 |
| J054 | chr5 | 136033861 | 136044057 | TRUE | OK | 16828.0 | 0.0129 | 0.2534 | 0.7509 | -0.198 | -0.099 | 17634.0 | 13057.0 | 12317.0 | 23378.0 | 14583.0 | 20788.0 |
| J055 | chr5 | 136044122 | 136044781 | TRUE | OK | 50.3 | 0.0262 | 0.09385 | 0.6261 | -0.566 | -0.283 | 79.0 | 43.0 | 30.0 | 54.0 | 42.0 | 61.0 |
| J056 | chr5 | 136044122 | 136046334 | TRUE | OK | 18142.4 | 0.00765 | 0.4319 | 0.8227 | -0.108 | -0.054 | 18372.0 | 13409.0 | 12972.0 | 24094.0 | 17420.0 | 23269.0 |
| J057 | chr5 | 136044870 | 136046334 | TRUE | OK | 63.8 | 0.0159 | 0.1749 | 0.7068 | -0.345 | -0.172 | 77.0 | 58.0 | 40.0 | 75.0 | 51.0 | 87.0 |
| J058 | chr5 | 136046495 | 136046850 | TRUE | OK | 19950.0 | 0.00441 | 0.3313 | 0.7839 | -0.103 | -0.052 | 19332.0 | 14892.0 | 14719.0 | 25791.0 | 20030.0 | 25461.0 |
| J059 | chr5 | 136046556 | 136046850 | TRUE | OK | 14.7 | 0.00918 | 0.8527 | 0.9629 | 0.062 | 0.031 | 18.0 | 9.0 | 7.0 | 17.0 | 20.0 | 18.0 |
| J060 | chr5 | 136047015 | 136047273 | TRUE | OK | 16883.7 | 0.0135 | 0.2329 | 0.7418 | -0.208 | -0.104 | 17145.0 | 13685.0 | 12398.0 | 23781.0 | 14317.0 | 20709.0 |
| J061 | chr5 | 136047420 | 136048252 | TRUE | OK | 49.2 | 0.00504 | 0.000156 | 0.02151 | -0.773 | -0.386 | 57.0 | 59.0 | 40.0 | 50.0 | 37.0 | 55.0 |
| J062 | chr5 | 136047420 | 136049438 | TRUE | OK | 18734.0 | 0.00247 | 0.05824 | 0.5554 | -0.154 | -0.077 | 17615.0 | 14835.0 | 14284.0 | 23800.0 | 19056.0 | 23176.0 |
| J063 | chr5 | 136048349 | 136049438 | TRUE | OK | 79.1 | 0.00848 | 0.001298 | 0.09233 | -0.654 | -0.327 | 87.0 | 96.0 | 58.0 | 85.0 | 66.0 | 87.0 |
| J064 | chr5 | 136049580 | 136052906 | TRUE | OK | 23389.0 | 0.0011 | 0.2911 | 0.7674 | -0.059 | -0.030 | 20460.0 | 18067.0 | 17546.0 | 29157.0 | 25848.0 | 29401.0 |
| J065 | chr5 | 136049580 | 136053017 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.0349 | 0.5831 | NA | NA | NA | 3.0 | 1.0 | 3.0 | 3.0 | 2.0 | 3.0 |
| J066 | chr5 | 136053119 | 136053942 | TRUE | OK | 20475.0 | 0.00508 | 0.1409 | 0.6801 | -0.168 | -0.084 | 20347.0 | 16232.0 | 14965.0 | 27460.0 | 20066.0 | 24468.0 |
| J067 | chr5 | 136054080 | 136054674 | TRUE | OK | 96.3 | 0.00265 | 0.0007865 | 0.06691 | -0.496 | -0.248 | 118.0 | 88.0 | 72.0 | 105.0 | 91.0 | 110.0 |
| J068 | chr5 | 136054080 | 136054715 | TRUE | OK | 21490.3 | 0.00171 | 0.004899 | 0.2004 | -0.194 | -0.097 | 20812.0 | 16946.0 | 16656.0 | 27292.0 | 22501.0 | 25191.0 |
| J069 | chr5 | 136054861 | 136055679 | TRUE | OK | 19552.4 | 0.000689 | 0.002184 | 0.1274 | -0.136 | -0.068 | 18765.0 | 15286.0 | 14486.0 | 24399.0 | 21407.0 | 23379.0 |
| J070 | chr5 | 136055816 | 136056448 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0467 | 0.03347 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 3.0 | 3.0 | 4.0 |
| J071 | chr5 | 136055816 | 136056664 | TRUE | OK | 20025.6 | 0.000769 | 0.9802 | 0.996 | -0.001 | -0.001 | 18424.0 | 14890.0 | 13893.0 | 25737.0 | 23514.0 | 24023.0 |
| J072 | chr5 | 136056530 | 136056664 | TRUE | OK | 3.9 | 0.0299 | 0.103 | 0.6388 | 1.215 | 0.607 | 3.0 | 0.0 | 2.0 | 4.0 | 8.0 | 6.0 |
| J073 | chr5 | 136056795 | 136059089 | TRUE | OK | 24665.4 | 0.000527 | 0.2504 | 0.7497 | 0.045 | 0.023 | 21892.0 | 18297.0 | 16854.0 | 31259.0 | 29980.0 | 29967.0 |
| J074 | chr5 | 136058919 | 136059089 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.0 | 0.0348 | 0.3899 | NA | NA | NA | 2.0 | 4.0 | 3.0 | 2.0 | 5.0 | 2.0 |
| J075 | chr5 | 136059214 | 136060833 | TRUE | OK | 22420.7 | 0.00178 | 0.5526 | 0.8666 | 0.043 | 0.021 | 20427.0 | 16362.0 | 15193.0 | 27700.0 | 28213.0 | 26900.0 |
| J076 | chr5 | 136060936 | 136061499 | TRUE | OK | 19923.5 | 0.00194 | 0.6208 | 0.8908 | 0.038 | 0.019 | 18069.0 | 14712.0 | 13481.0 | 24925.0 | 25185.0 | 23404.0 |
| J077 | chr5 | 136060936 | 136063185 | TRUE | OK | 3.2 | 0.0269 | 0.2744 | 0.7602 | 0.849 | 0.424 | 2.0 | 1.0 | 2.0 | 4.0 | 5.0 | 5.0 |
| J078 | chr5 | 136061579 | 136062662 | TRUE | OK | 21863.6 | 0.00277 | 0.7593 | 0.9357 | 0.030 | 0.015 | 19452.0 | 16135.0 | 15242.0 | 26316.0 | 28430.0 | 25710.0 |
| J079 | chr5 | 136061579 | 136063185 | TRUE | OK | 16.6 | 0.0189 | 0.2779 | 0.7618 | -0.404 | -0.202 | 20.0 | 9.0 | 17.0 | 19.0 | 22.0 | 13.0 |
| J080 | chr5 | 136062687 | 136063185 | TRUE | OK | 21501.6 | 0.00234 | 0.8678 | 0.9671 | -0.012 | -0.006 | 19564.0 | 16006.0 | 15254.0 | 26151.0 | 27318.0 | 24892.0 |
| N081 | chr5 | 136028348 | 136033762 | TRUE | OK | 22.1 | 0.0056 | 4.025e-09 | 2.832e-06 | -1.671 | -0.836 | 30.0 | 33.0 | 27.0 | 17.0 | 11.0 | 16.0 |
| N082 | chr5 | 136033861 | 136043588 | TRUE | OK | 8.8 | 0.141 | 0.299 | 0.771 | -0.613 | -0.306 | 7.0 | 10.0 | 9.0 | 16.0 | 1.0 | 10.0 |
| N083 | chr5 | 136047015 | 136049438 | TRUE | OK | 26.5 | 0.00799 | 7.406e-07 | 0.0002773 | -1.352 | -0.676 | 35.0 | 36.0 | 29.0 | 29.0 | 17.0 | 15.0 |
| N084 | chr5 | 136049580 | 136050387 | TRUE | OK | 10.5 | 0.0608 | 0.4834 | 0.8417 | -0.366 | -0.183 | 6.0 | 13.0 | 9.0 | 9.0 | 18.0 | 7.0 |
| N085 | chr5 | 136054035 | 136054715 | TRUE | OK | 31.8 | 0.00399 | 0.2701 | 0.7582 | -0.258 | -0.129 | 31.0 | 24.0 | 28.0 | 41.0 | 33.0 | 34.0 |
| N086 | chr5 | 136054861 | 136055268 | TRUE | OK | 23.1 | 0.0285 | 0.9243 | 0.9822 | -0.003 | -0.002 | 19.0 | 16.0 | 19.0 | 18.0 | 25.0 | 41.0 |
| N087 | chr5 | 136060845 | 136061499 | TRUE | OK | 10.3 | 0.0131 | 0.672 | 0.9083 | 0.185 | 0.092 | 5.0 | 7.0 | 10.0 | 14.0 | 15.0 | 10.0 |
| N088 | chr5 | 136062687 | 136065110 | TRUE | OK | 15.9 | 0.00658 | 0.827 | 0.9554 | 0.075 | 0.038 | 13.0 | 11.0 | 12.0 | 18.0 | 19.0 | 22.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000120708.17 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |