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Normalized Counts Table (ENSG00000092199.17)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr14	21209135	21210533	TRUE	OK	2422.3	0.00149	0.8632	0.9659	-0.014	-0.007	2409.6	2402.3	2357.9	2434.1	2650.2	2279.7
E002	chr14	21210533	21210545	TRUE	OK	380.5	0.0108	0.3108	0.7756	-0.187	-0.094	393.2	374.1	427.9	411.1	319.5	357.1
E003	chr14	21210545	21210549	TRUE	OK	374.1	0.0105	0.3054	0.7733	-0.187	-0.094	388.1	368.2	419.0	406.2	316.4	347.0
E004	chr14	21210549	21210555	TRUE	OK	399.9	0.00837	0.2562	0.7519	-0.188	-0.094	410.3	403.8	442.3	426.9	347.8	368.2
E005	chr14	21210555	21210581	TRUE	OK	747.3	0.00258	0.1868	0.7152	-0.127	-0.063	756.6	738.4	804.8	755.0	779.4	649.6
E006	chr14	21210581	21210612	TRUE	OK	1187.8	0.00271	0.9885	0.9978	0.006	0.003	1151.5	1186.8	1154.0	1184.0	1429.9	1020.8
E007	chr14	21210612	21210903	TRUE	OK	5896.0	0.0047	0.1831	0.7129	0.166	0.083	5643.3	5604.3	5223.5	5958.4	7639.6	5306.8
E008	chr14	21210903	21210922	TRUE	OK	3974.2	0.00592	0.1957	0.7206	0.180	0.090	3892.1	3703.8	3426.5	4070.7	5209.3	3542.6
E009	chr14	21210922	21210932	TRUE	OK	3860.8	0.00545	0.1945	0.7197	0.172	0.086	3814.5	3578.1	3344.5	3961.0	4994.6	3472.0
E010	chr14	21210932	21210936	TRUE	OK	3792.3	0.0054	0.175	0.707	0.178	0.089	3747.1	3503.9	3272.4	3888.9	4911.8	3429.6
E011	chr14	21210936	21210965	TRUE	OK	4380.5	0.00565	0.1168	0.6567	0.209	0.104	4289.6	4032.5	3713.6	4459.1	5767.7	4020.7
E012	chr14	21210965	21211105	TRUE	OK	10023.4	0.00594	0.1061	0.6435	0.221	0.111	9839.9	9065.6	8767.5	10001.4	13175.8	9290.1
E013	chr14	21211105	21211223	TRUE	OK	10628.1	0.00662	0.04171	0.5055	0.293	0.146	10222.0	9445.7	9077.9	10542.0	14411.8	10068.9
E014	chr14	21211223	21211235	TRUE	OK	8360.5	0.0083	0.04847	0.5279	0.316	0.158	8135.6	7393.8	6804.2	8310.5	11577.2	7941.5
E015	chr14	21211235	21211237	TRUE	OK	7902.3	0.00865	0.05244	0.5405	0.317	0.159	7734.7	6932.6	6411.8	7858.8	10985.4	7490.6
E016	chr14	21211237	21211255	TRUE	OK	8193.3	0.00834	0.04742	0.5248	0.319	0.159	7972.7	7213.7	6674.5	8171.1	11367.7	7759.9
E017	chr14	21211255	21211306	TRUE	OK	8455.3	0.00781	0.05328	0.5423	0.304	0.152	8098.1	7596.7	6988.3	8366.8	11738.6	7943.5
E018	chr14	21211306	21211405	TRUE	OK	562.1	0.00131	2.268e-06	0.0007168	0.374	0.187	478.5	495.9	465.6	581.1	753.2	598.2
E019	chr14	21211405	21211417	TRUE	OK	5996.5	0.00788	0.1126	0.6513	0.258	0.129	5656.9	5566.7	5021.7	5784.4	8437.8	5511.5
E020	chr14	21211417	21211458	TRUE	OK	6587.0	0.0059	0.2957	0.7695	0.154	0.077	6256.5	6388.2	5844.2	6203.5	8840.1	5989.7
E021	chr14	21211458	21211489	TRUE	OK	6354.7	0.00411	0.6303	0.8943	0.065	0.033	5750.7	6474.3	6120.3	5954.4	8142.4	5686.1
E022	chr14	21211489	21211563	TRUE	OK	8575.9	0.00276	0.7985	0.9474	0.029	0.015	7651.2	8736.0	8666.6	7807.4	10503.5	8090.8
E023	chr14	21211563	21211566	TRUE	OK	6535.4	0.00174	0.238	0.7442	-0.085	-0.043	5987.0	6810.8	6968.3	5886.2	7348.4	6211.6
E024	chr14	21211809	21211903	TRUE	OK	10082.8	0.000527	0.5859	0.8786	-0.022	-0.011	9436.4	10172.2	10289.5	9433.2	11505.0	9660.3
E025	chr14	21211903	21211923	TRUE	OK	8197.5	0.000383	0.3724	0.7997	-0.033	-0.017	7919.8	8233.2	8238.7	7776.8	9106.1	7910.2
E026	chr14	21211923	21212002	TRUE	OK	31.2	0.00672	2.371e-24	1.303e-20	3.225	1.612	6.0	5.9	5.5	60.3	60.8	48.4
E027	chr14	21212959	21212960	TRUE	OK	7502.3	0.0005	0.494	0.8453	-0.029	-0.014	7352.6	7472.0	7470.5	7113.7	8338.3	7266.7
E028	chr14	21212960	21212996	TRUE	OK	8868.0	0.000813	0.3778	0.8015	-0.046	-0.023	8796.7	8810.2	8872.8	8428.1	9699.0	8601.2
E029	chr14	21212996	21213044	TRUE	OK	8871.5	0.00198	0.2459	0.7477	-0.092	-0.046	9105.5	8795.4	8940.4	8551.6	9339.7	8496.3
E030	chr14	21213044	21213068	TRUE	OK	7518.8	0.00286	0.4667	0.8357	-0.071	-0.035	7836.2	7394.8	7395.1	7387.4	7895.2	7204.2
E031	chr14	21213068	21213104	TRUE	OK	9293.8	0.00386	0.2889	0.7662	-0.117	-0.058	9775.1	9175.5	9361.6	9165.3	9430.9	8854.4
E032	chr14	21213104	21213117	TRUE	OK	9194.3	0.00366	0.1667	0.7014	-0.147	-0.073	9700.8	9128.0	9419.3	8929.1	9233.9	8754.5
E033	chr14	21213117	21213419	TRUE	OK	103.9	0.00663	6.623e-15	1.413e-11	1.444	0.722	53.7	52.5	57.6	169.0	145.6	145.3
E034	chr14	21230318	21230331	TRUE	OK	9318.2	0.0039	0.1061	0.6435	-0.176	-0.088	9890.2	9299.2	9667.6	8989.4	9225.6	8837.2
E035	chr14	21230331	21230366	TRUE	OK	10944.3	0.00328	0.1234	0.6636	-0.155	-0.077	11446.0	10784.9	11406.9	10548.0	11094.3	10385.6
E036	chr14	21230366	21230660	TRUE	OK	96.4	0.00406	8.109e-10	6.83e-07	1.008	0.504	58.9	54.4	75.4	135.4	138.3	116.0
E037	chr14	21230897	21230957	TRUE	OK	40.9	0.00642	0.1348	0.6748	-0.339	-0.169	37.5	41.6	56.5	29.6	45.0	35.3
E038	chr14	21230957	21230996	TRUE	OK	4743.8	0.0039	0.2899	0.7667	-0.118	-0.059	4874.7	4629.3	5002.9	4724.0	4687.7	4544.2
E039	chr14	21230996	21231027	TRUE	OK	11227.5	0.0025	0.1022	0.6379	-0.143	-0.071	11682.3	11122.4	11586.5	10743.6	11599.2	10630.7
E040	chr14	21231027	21231072	TRUE	OK	11529.5	0.00246	0.07588	0.5953	-0.154	-0.077	11884.4	11404.5	12120.8	10935.4	11837.0	10994.9
E041	chr14	21231364	21231422	FALSE	LOW_COUNTS_INDEP_FILTER	1.1	0.243	0.4067	NA	NA	NA	0.9	1.0	0.0	4.0	1.0	0.0
E042	chr14	21233952	21233994	TRUE	OK	10689.8	0.00247	0.2823	0.7636	-0.095	-0.047	11046.0	10444.4	10846.0	10213.9	11219.0	10369.5
E043	chr14	21233994	21234030	TRUE	OK	9374.3	0.00248	0.2645	0.7557	-0.099	-0.050	9615.5	9171.5	9627.7	9008.2	9726.3	9096.5
E044	chr14	21234030	21234077	TRUE	OK	9314.6	0.00303	0.1905	0.7175	-0.128	-0.064	9554.1	9290.3	9616.6	9013.1	9412.0	9001.7
E045	chr14	21234077	21234218	TRUE	OK	12142.6	0.00485	0.0893	0.6193	-0.207	-0.104	12255.5	12348.8	13181.7	11589.6	11690.4	11789.7
E046	chr14	21234218	21234229	TRUE	OK	7606.7	0.00839	0.07519	0.5941	-0.280	-0.140	7823.5	8005.5	8477.0	7398.3	6635.0	7301.0
E047	chr14	21234229	21234245	TRUE	OK	22.1	0.00885	0.006734	0.2365	0.813	0.407	11.1	19.8	16.6	30.6	27.2	27.2
E048	chr14	21234768	21234831	TRUE	OK	10.9	0.0312	0.6427	0.8986	-0.230	-0.115	6.0	13.9	15.5	12.8	8.4	9.1
E049	chr14	21236372	21236460	TRUE	OK	125.8	0.00759	0.05672	0.5516	-0.347	-0.174	125.4	138.6	153.0	119.6	99.5	119.0
E050	chr14	21254546	21254593	FALSE	LOW_COUNTS_INDEP_FILTER	1.3	0.103	0.04198	NA	NA	NA	0.9	0.0	0.0	3.0	1.0	3.0
E051	chr14	21262600	21262602	TRUE	OK	62.6	0.0174	0.7792	0.9418	-0.074	-0.037	61.4	56.4	72.1	65.2	47.1	73.6
E052	chr14	21262602	21262677	TRUE	OK	81.6	0.018	0.9898	0.9982	0.009	0.004	76.8	80.2	83.1	92.9	61.8	94.8
E053	chr14	21262677	21262698	TRUE	OK	60.7	0.0186	0.7706	0.9392	-0.082	-0.041	56.3	71.3	56.5	66.2	45.0	68.6
E054	chr14	21262698	21262768	TRUE	OK	67.6	0.0075	0.4225	0.8192	-0.169	-0.084	67.4	78.2	65.4	66.2	56.6	71.6
E055	chr14	21262768	21262992	TRUE	OK	89.9	0.00516	0.2145	0.7323	-0.219	-0.109	97.2	96.0	92.0	88.9	76.5	88.8
E056	chr14	21262992	21263310	TRUE	OK	130.4	0.027	0.4532	0.8303	-0.205	-0.103	149.3	129.7	133.0	141.3	85.9	143.2
E057	chr14	21263310	21263336	TRUE	OK	6083.4	0.00794	0.02888	0.4459	-0.333	-0.166	6366.6	6547.6	6868.5	5839.8	5201.0	5677.0
E058	chr14	21263336	21263582	TRUE	OK	315.7	0.00526	0.8279	0.9557	0.026	0.013	314.7	308.8	298.2	347.9	312.2	312.7
E059	chr14	21263582	21263666	TRUE	OK	185.4	0.02	0.8994	0.9757	-0.028	-0.014	195.3	192.0	164.1	208.5	144.6	207.8
E060	chr14	21263666	21263829	TRUE	OK	375.2	0.00923	0.607	0.886	-0.090	-0.045	364.2	371.2	405.7	361.7	331.0	417.6
E061	chr14	21263829	21265516	TRUE	OK	50.6	0.0211	0.6648	0.906	-0.128	-0.064	53.7	43.6	58.8	53.4	35.6	58.5
E062	chr14	21268622	21268651	TRUE	OK	147.0	0.00381	0.05899	0.5573	-0.267	-0.134	153.5	154.4	166.3	150.2	143.5	114.0
E063	chr14	21268651	21268668	TRUE	OK	135.3	0.00411	0.06804	0.5787	-0.269	-0.134	144.2	141.5	150.8	139.3	132.0	103.9
E064	chr14	21269297	21269389	TRUE	OK	7422.3	0.00796	0.09867	0.6335	-0.254	-0.127	7600.0	7772.9	8177.7	7228.3	6557.5	7197.1
E065	chr14	21269389	21269392	TRUE	OK	5705.1	0.00711	0.1217	0.6617	-0.226	-0.113	5742.2	5988.3	6273.2	5560.1	5104.6	5562.0
E066	chr14	21269392	21269400	TRUE	OK	5187.4	0.00694	0.1336	0.6736	-0.217	-0.108	5181.8	5478.6	5676.8	5065.0	4656.2	5065.7
E067	chr14	21269400	21269403	TRUE	OK	4679.4	0.00738	0.1519	0.69	-0.214	-0.107	4579.6	4975.7	5181.3	4585.6	4179.6	4574.5
E068	chr14	21269403	21269404	TRUE	OK	4380.5	0.00747	0.1787	0.7095	-0.203	-0.101	4232.4	4674.8	4847.7	4301.0	3924.0	4303.1
E069	chr14	21269404	21269406	TRUE	OK	3890.6	0.00715	0.1712	0.7044	-0.202	-0.101	3771.8	4117.6	4332.2	3835.5	3495.6	3790.7
E070	chr14	21269406	21269409	TRUE	OK	3819.3	0.00715	0.1661	0.701	-0.205	-0.102	3694.2	4062.2	4251.3	3762.4	3429.6	3716.1
E071	chr14	21269409	21269410	TRUE	OK	3444.6	0.00764	0.2265	0.7385	-0.186	-0.093	3247.3	3696.9	3830.0	3415.5	3100.7	3377.1
E072	chr14	21269410	21269411	TRUE	OK	397.6	0.00942	0.6682	0.9071	-0.077	-0.038	413.7	388.0	401.3	412.1	348.8	421.6
E073	chr14	21269411	21269421	TRUE	OK	374.1	0.00893	0.6907	0.9144	-0.071	-0.035	391.5	364.2	373.6	383.5	332.1	399.4
E074	chr14	21269421	21269423	TRUE	OK	120.6	0.0106	0.7259	0.9254	0.067	0.034	117.7	124.7	104.2	120.6	111.0	145.3
E075	chr14	21269423	21269424	TRUE	OK	109.5	0.00581	0.6925	0.9148	0.063	0.031	106.6	109.9	98.7	107.7	106.8	127.1
E076	chr14	21269424	21269425	TRUE	OK	85.8	0.0121	0.4921	0.8445	0.144	0.072	87.9	86.1	65.4	88.0	82.8	104.9
E077	chr14	21269425	21269442	TRUE	OK	84.0	0.0121	0.5322	0.8595	0.131	0.065	86.2	86.1	63.2	83.0	82.8	102.9
E078	chr14	21269442	21269445	TRUE	OK	13.1	0.0105	0.6338	0.8955	-0.174	-0.087	12.8	13.9	14.4	9.9	13.6	14.1
E079	chr14	21269445	21269494	TRUE	OK	14.6	0.00937	0.3582	0.7945	-0.320	-0.160	15.4	16.8	15.5	10.9	14.7	14.1
J080	chr14	21211235	21211237	FALSE	LOW_COUNTS_INDEP_FILTER	1.4	0.0876	0.1882	NA	NA	NA	0.0	0.0	2.2	2.0	1.0	3.0
J081	chr14	21211306	21211405	TRUE	OK	5251.5	0.00855	0.0826	0.6074	0.292	0.146	4924.2	4834.2	4284.5	5065.9	7517.0	4883.1
J082	chr14	21211306	21211809	TRUE	OK	22.9	0.0235	0.2597	0.7533	0.410	0.205	13.6	27.7	16.6	20.8	37.7	21.2
J083	chr14	21211563	21211809	TRUE	OK	269.4	0.00113	0.8929	0.974	0.015	0.008	257.6	264.3	267.2	245.1	331.0	251.2
J084	chr14	21211566	21211809	TRUE	OK	6449.1	0.00171	0.2208	0.7357	-0.088	-0.044	5893.2	6724.7	6901.8	5777.5	7258.3	6139.0
J085	chr14	21211903	21213068	TRUE	OK	66.4	0.00697	0.05349	0.5429	-0.396	-0.198	80.2	80.2	62.1	63.3	54.5	58.5
J086	chr14	21211923	21212959	TRUE	OK	7472.7	0.000354	0.3742	0.8002	-0.032	-0.016	7322.8	7455.2	7451.6	7081.1	8285.9	7239.5
J087	chr14	21213044	21230957	FALSE	LOW_COUNTS_INDEP_FILTER	2.6	0.203	0.4537	NA	NA	NA	5.1	2.0	2.2	4.9	1.0	0.0
J088	chr14	21213117	21230318	TRUE	OK	8665.6	0.0036	0.09343	0.6256	-0.176	-0.088	9193.3	8639.0	9021.3	8366.8	8577.1	8195.7
J089	chr14	21230366	21230957	TRUE	OK	4081.3	0.00423	0.1865	0.715	-0.152	-0.076	4222.2	3958.2	4441.9	4024.3	3960.7	3880.5
J090	chr14	21230366	21230996	TRUE	OK	5908.2	0.00174	0.04994	0.5326	-0.144	-0.072	6221.6	5894.3	6077.0	5559.1	6112.3	5585.2
J091	chr14	21230366	21234077	FALSE	LOW_COUNTS_INDEP_FILTER	2.2	0.0431	0.04618	NA	NA	NA	5.1	2.0	3.3	1.0	1.0	1.0
J092	chr14	21231027	21234218	TRUE	OK	46.4	0.00502	0.006321	0.2288	-0.579	-0.290	45.2	65.3	54.3	35.6	37.7	40.3
J093	chr14	21231072	21231364	FALSE	LOW_COUNTS_INDEP_FILTER	0.7	0.146	0.352	NA	NA	NA	0.0	1.0	0.0	2.0	1.0	0.0
J094	chr14	21231072	21233952	TRUE	OK	9060.8	0.00186	0.0977	0.6322	-0.126	-0.063	9374.2	8908.2	9393.8	8565.5	9441.3	8681.9
J095	chr14	21234229	21234768	TRUE	OK	8.7	0.0309	0.2723	0.7593	-0.566	-0.283	5.1	13.9	12.2	7.9	5.2	8.1
J096	chr14	21234229	21236372	TRUE	OK	86.4	0.00662	0.02297	0.4093	-0.428	-0.214	85.3	101.0	107.5	73.1	67.0	84.7
J097	chr14	21234229	21254546	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.0817	0.06382	NA	NA	NA	0.9	0.0	0.0	2.0	1.0	3.0
J098	chr14	21234229	21262600	TRUE	OK	51.0	0.023	0.7104	0.9205	-0.109	-0.055	52.9	44.5	58.8	52.4	35.6	61.5
J099	chr14	21234229	21263310	TRUE	OK	5688.6	0.00786	0.02226	0.4043	-0.346	-0.173	5992.1	6117.0	6475.0	5429.6	4836.4	5281.6
J100	chr14	21234229	21269297	TRUE	OK	1584.1	0.00607	0.8065	0.9494	0.028	0.014	1497.0	1530.2	1596.3	1640.6	1533.6	1706.7
J101	chr14	21234831	21263310	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.256	0.2354	NA	NA	NA	0.0	0.0	0.0	1.0	0.0	1.0
J102	chr14	21236460	21263310	TRUE	OK	77.5	0.00355	0.01336	0.3283	-0.416	-0.208	81.0	88.1	93.1	75.1	61.8	65.6
J103	chr14	21254593	21263310	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J104	chr14	21262698	21263310	FALSE	LOW_COUNTS_INDEP_FILTER	2.6	0.106	0.7667	NA	NA	NA	2.6	5.9	0.0	2.0	2.1	3.0
J105	chr14	21262768	21263310	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.497	0.07975	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	5.0
J106	chr14	21263336	21263666	TRUE	OK	45.1	0.02	0.6896	0.9141	-0.126	-0.063	38.4	57.4	43.2	50.4	33.5	47.4
J107	chr14	21263336	21268622	TRUE	OK	114.6	0.00715	0.03093	0.4572	-0.384	-0.192	125.4	122.7	135.2	119.6	103.7	80.7
J108	chr14	21263336	21269297	TRUE	OK	5437.9	0.00757	0.02522	0.4243	-0.333	-0.166	5694.4	5875.5	6136.9	5185.5	4651.0	5083.9
J109	chr14	21263582	21269297	FALSE	LOW_COUNTS_INDEP_FILTER	1.5	0.0678	0.7808	NA	NA	NA	2.6	0.0	2.2	1.0	1.0	2.0
J110	chr14	21263829	21269297	TRUE	OK	220.8	0.00964	0.3159	0.7776	-0.186	-0.093	226.0	212.8	255.0	205.6	187.5	238.1
J111	chr14	21268668	21269297	TRUE	OK	121.6	0.00219	0.03188	0.4617	-0.285	-0.142	127.9	124.7	141.9	119.6	119.4	95.8
N112	chr14	21263336	21263619	TRUE	OK	39.6	0.0465	0.7896	0.9447	-0.126	-0.063	55.4	32.7	33.3	43.5	25.1	47.4

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000092199.17
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE