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Normalized Counts Table (ENSG00000067225.18)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr15	72199028	72199031	TRUE	OK	119.4	0.00506	0.2831	0.764	-0.176	-0.088	130.5	125.7	98.7	122.5	129.9	108.9
E002	chr15	72199031	72199035	TRUE	OK	471.9	0.00646	0.02655	0.4325	-0.328	-0.164	566.4	481.0	432.3	454.6	492.3	404.5
E003	chr15	72199035	72199104	TRUE	OK	8262.9	0.00412	0.3786	0.8017	-0.084	-0.042	8313.9	7640.3	7884.0	8061.4	10245.8	7432.1
E004	chr15	72199104	72199589	TRUE	OK	46661.2	0.00954	0.3207	0.7797	0.186	0.093	39936.1	40954.1	42825.2	43990.5	66097.8	46163.3
E005	chr15	72199589	72199628	TRUE	OK	11552.4	0.0022	0.362	0.7958	0.077	0.038	10831.0	10543.4	10115.5	11758.6	14457.9	11608.1
E006	chr15	72199628	72199756	TRUE	OK	18095.3	0.00272	0.1964	0.721	0.120	0.060	16847.0	15927.9	15861.0	18197.3	23275.0	18463.3
E007	chr15	72200473	72200507	TRUE	OK	15124.0	0.00294	0.1711	0.7044	0.131	0.065	14161.0	13264.4	13038.7	15298.6	19499.7	15481.6
E008	chr15	72200507	72200655	TRUE	OK	24751.9	0.00243	0.9317	0.9842	0.007	0.004	24637.2	22089.4	22443.6	25381.1	29107.6	24852.4
E009	chr15	72200655	72201866	TRUE	OK	1327.4	0.00828	0.02763	0.4389	0.332	0.166	1237.7	1104.6	925.6	1473.5	1561.9	1661.3
E010	chr15	72201866	72202053	TRUE	OK	299.4	0.00952	0.6073	0.8861	0.087	0.044	301.1	270.2	239.4	317.2	297.5	371.2
E011	chr15	72202053	72202453	TRUE	OK	634.4	0.00454	0.2625	0.7545	0.135	0.067	582.6	533.5	573.1	700.7	663.1	753.5
E012	chr15	72202453	72202532	TRUE	OK	24117.9	0.00403	0.172	0.7048	-0.149	-0.074	25539.7	22107.3	23210.7	25215.1	25342.8	23291.9
E013	chr15	72202532	72202620	TRUE	OK	29177.3	0.00434	0.04005	0.4985	-0.230	-0.115	31263.1	26533.7	29940.6	29822.5	30255.7	27248.1
E014	chr15	72202620	72202689	TRUE	OK	491.7	0.00304	0.0003552	0.0391	0.379	0.190	395.8	371.2	421.2	557.4	579.3	625.4
E015	chr15	72202689	72203021	TRUE	OK	414.0	0.00761	0.7525	0.9337	0.045	0.022	423.9	365.2	350.3	444.7	412.7	487.2
E016	chr15	72203021	72203188	TRUE	OK	966.6	0.00412	0.1002	0.6355	0.180	0.090	944.2	794.8	787.1	1092.1	1137.6	1044.0
E017	chr15	72203188	72204559	TRUE	OK	972.2	0.0123	0.6888	0.9139	-0.070	-0.035	1037.2	887.9	868.0	929.0	899.8	1211.5
E018	chr15	72206258	72206674	TRUE	OK	255.5	0.00733	0.3628	0.7961	-0.154	-0.077	290.0	236.6	228.4	245.1	250.4	282.4
E019	chr15	72206674	72206727	TRUE	OK	129.5	0.0129	0.2975	0.7705	-0.224	-0.112	145.0	128.7	118.6	125.5	105.8	153.3
E020	chr15	72206727	72206798	TRUE	OK	28202.2	0.00436	0.06079	0.5617	-0.211	-0.105	30130.4	25627.0	28588.2	29090.1	29408.2	26369.5
E021	chr15	72206798	72206854	TRUE	OK	31854.6	0.00311	0.1057	0.6431	-0.153	-0.077	32764.3	28852.8	31918.3	32924.7	34263.5	30404.3
E022	chr15	72206854	72206880	TRUE	OK	30091.4	0.00203	0.0676	0.5779	-0.140	-0.070	30205.4	27594.7	30239.9	30887.8	32408.3	29212.0
E023	chr15	72207126	72207167	TRUE	OK	35955.7	0.00166	0.1233	0.6636	-0.107	-0.054	35491.3	33245.5	35299.3	37190.1	38892.5	35615.3
E024	chr15	72207167	72207277	TRUE	OK	51673.7	0.00251	0.4369	0.8247	-0.068	-0.034	50176.9	48379.6	48938.8	54844.8	55376.4	52325.4
E025	chr15	72208616	72208620	TRUE	OK	347.6	0.00692	0.002098	0.1245	0.471	0.236	267.0	291.0	249.4	480.3	408.5	389.4
E026	chr15	72208620	72208665	TRUE	OK	46188.1	0.00357	0.6407	0.8981	-0.050	-0.025	44508.9	43954.2	42783.1	49855.0	48561.2	47466.5
E027	chr15	72208665	72208842	TRUE	OK	57945.1	0.0032	0.952	0.9894	0.002	0.001	54332.6	54980.6	52913.0	62474.4	62415.7	60554.4
E028	chr15	72208842	72208891	TRUE	OK	28825.3	0.00163	0.916	0.98	0.005	0.002	26856.7	27528.4	26232.6	30446.1	31848.9	30039.2
E029	chr15	72208891	72208962	TRUE	OK	454.0	0.0038	8.657e-28	5.947e-24	1.309	0.654	215.8	228.6	270.5	703.7	676.7	628.4
E030	chr15	72209505	72209672	TRUE	OK	311.4	0.00542	0.1064	0.6438	0.223	0.112	235.4	280.1	287.1	378.5	334.2	353.0
E031	chr15	72209672	72209732	TRUE	OK	29012.8	0.00215	0.7297	0.9265	-0.030	-0.015	27162.0	27990.7	26881.1	30903.6	31164.9	29974.6
E032	chr15	72209732	72209750	TRUE	OK	22086.7	0.0035	0.493	0.8449	-0.070	-0.035	20996.7	21526.2	20788.5	23880.9	22589.9	22738.2
E033	chr15	72209750	72209782	TRUE	OK	24270.6	0.00296	0.713	0.9213	-0.036	-0.018	22883.5	23318.8	22589.9	26172.7	25363.7	25295.2
E034	chr15	72209782	72209844	TRUE	OK	25467.5	0.00263	0.511	0.852	-0.059	-0.030	24535.7	24080.9	24092.0	27230.2	26643.8	26222.2
E035	chr15	72209844	72209859	TRUE	OK	18312.1	0.0026	0.6572	0.9034	-0.041	-0.020	17859.5	16978.1	17160.2	19640.2	19337.3	18897.0
E036	chr15	72209859	72210026	TRUE	OK	48.6	0.0128	3.201e-07	0.000136	1.341	0.670	33.3	21.8	18.8	80.1	67.0	70.6
E037	chr15	72210059	72210346	TRUE	OK	40.4	0.0163	0.1722	0.7049	0.385	0.192	38.4	28.7	29.9	54.4	36.7	54.5
E038	chr15	72210346	72210478	TRUE	OK	29095.6	0.00277	0.6332	0.8953	-0.045	-0.023	27992.8	26684.1	27999.6	31149.7	30496.6	30251.0
E039	chr15	72217408	72217451	TRUE	OK	23112.8	0.00356	0.5304	0.8588	-0.066	-0.033	22668.6	21080.8	22400.3	24745.6	23678.3	24102.9
E040	chr15	72217451	72217483	TRUE	OK	22611.9	0.00414	0.4693	0.8366	-0.081	-0.040	22217.3	20803.7	22011.2	24345.4	22743.9	23550.2
E041	chr15	72217483	72217500	TRUE	OK	19473.6	0.00586	0.3412	0.7875	-0.124	-0.062	19570.6	17988.7	19266.5	21021.8	18711.9	20282.0
E042	chr15	72218942	72218943	TRUE	OK	188.2	0.0101	0.2123	0.7308	0.239	0.120	148.4	169.3	164.1	225.3	180.2	242.1
E043	chr15	72218943	72218978	TRUE	OK	20625.7	0.0071	0.3173	0.7782	-0.142	-0.071	20906.3	19256.6	20359.5	22365.9	19308.0	21558.0
E044	chr15	72218978	72219110	TRUE	OK	21428.1	0.00901	0.1845	0.7137	-0.210	-0.105	21793.4	20478.0	21944.7	23212.8	19019.9	22119.8
E045	chr15	72219389	72219425	TRUE	OK	3.7	0.181	0.06318	0.5677	2.029	1.014	1.7	0.0	2.2	7.9	1.0	9.1
E046	chr15	72221167	72221284	TRUE	OK	35.7	0.0176	0.3549	0.7932	0.290	0.145	31.6	27.7	29.9	30.6	37.7	56.5
E047	chr15	72222449	72222531	TRUE	OK	16.1	0.0107	0.5846	0.8784	-0.185	-0.093	19.6	14.8	13.3	15.8	21.0	12.1
E048	chr15	72228576	72228676	TRUE	OK	11.4	0.0321	0.6333	0.8953	0.209	0.104	12.8	10.9	5.5	14.8	8.4	16.1
E049	chr15	72229546	72229722	TRUE	OK	18.8	0.00877	0.9927	0.9989	-0.005	-0.002	17.9	12.9	22.2	19.8	19.9	20.2
E050	chr15	72230895	72230899	TRUE	OK	76.9	0.0048	0.221	0.7358	-0.221	-0.110	87.9	69.3	75.4	81.0	72.3	75.7
E051	chr15	72230899	72231113	TRUE	OK	160.4	0.00313	0.6091	0.8867	-0.069	-0.034	152.7	156.4	151.9	165.0	157.1	179.5
E052	chr15	72231113	72231115	TRUE	OK	106.4	0.013	0.4886	0.8433	0.161	0.080	82.7	102.9	95.3	109.7	100.6	147.3
E053	chr15	72231115	72231171	TRUE	OK	10582.1	0.0145	0.1045	0.641	-0.317	-0.159	11281.4	10473.1	11198.5	11668.7	8296.4	10574.2
E054	chr15	72231171	72231190	TRUE	OK	3088.3	0.0163	0.05861	0.5564	-0.393	-0.196	3420.4	3054.5	3416.5	3311.7	2271.0	3055.4
E055	chr15	72231190	72231225	TRUE	OK	812.6	0.011	0.04377	0.5133	-0.356	-0.178	885.4	830.4	860.2	814.3	637.9	847.3
E056	chr15	72231225	72231323	TRUE	OK	49.2	0.00442	0.02631	0.4313	-0.449	-0.224	57.1	55.4	47.7	44.5	42.9	47.4
E057	chr15	72231323	72231386	TRUE	OK	97.8	0.00691	0.4748	0.8383	-0.131	-0.066	96.4	99.0	92.0	103.8	84.8	111.0
E058	chr15	72231386	72231391	TRUE	OK	51.4	0.00443	0.04325	0.5114	-0.401	-0.201	52.9	59.4	53.2	45.5	44.0	53.5
E059	chr15	72231391	72231598	TRUE	OK	44.6	0.0157	0.109	0.6472	-0.441	-0.221	46.9	57.4	41.0	45.5	30.4	46.4
E060	chr15	72231598	72231624	TRUE	OK	5.7	0.0589	0.9671	0.993	-0.046	-0.023	5.1	8.9	2.2	6.9	3.1	8.1
E061	chr15	72231624	72231680	FALSE	LOW_COUNTS_INDEP_FILTER	2.3	0.0503	0.5229	NA	NA	NA	2.6	3.0	2.2	1.0	3.1	2.0
E062	chr15	72231680	72231691	FALSE	LOW_COUNTS_INDEP_FILTER	1.6	0.0806	0.9146	NA	NA	NA	1.7	3.0	0.0	1.0	2.1	2.0
E063	chr15	72231691	72231819	TRUE	OK	4.6	0.0329	0.6278	0.8934	0.294	0.147	6.0	4.0	1.1	4.0	6.3	6.1
E064	chr15	72231819	72231822	FALSE	LOW_COUNTS_INDEP_FILTER	2.7	0.133	0.5642	NA	NA	NA	5.1	0.0	1.1	4.0	3.1	3.0
J065	chr15	72199756	72200473	TRUE	OK	13312.9	0.00258	0.2867	0.7653	0.099	0.049	12410.7	11778.7	11823.7	13189.6	17170.0	13504.5
J066	chr15	72200655	72202453	TRUE	OK	15290.7	0.00376	0.243	0.7465	-0.125	-0.062	16325.9	13998.8	14339.0	15827.4	16257.6	14995.4
J067	chr15	72200655	72203021	TRUE	OK	267.4	0.00451	0.03024	0.4537	0.298	0.149	232.9	207.9	226.1	301.4	378.2	258.2
J068	chr15	72202620	72206727	TRUE	OK	21651.7	0.00417	0.01563	0.3517	-0.265	-0.133	23469.5	19806.0	22727.3	21902.3	22144.7	19860.3
J069	chr15	72203188	72206727	TRUE	OK	421.9	0.0059	0.03302	0.4673	0.293	0.147	407.7	312.8	332.6	501.1	534.2	442.8
J070	chr15	72206880	72207126	TRUE	OK	26903.8	0.00159	0.01812	0.3737	-0.160	-0.080	27123.6	24984.6	27158.2	27352.7	28647.7	26155.7
J071	chr15	72207277	72208616	TRUE	OK	20.9	0.0346	6.956e-07	0.0002625	2.264	1.132	7.7	6.9	4.4	49.4	32.5	24.2
J072	chr15	72207277	72208620	TRUE	OK	35804.7	0.0029	0.5577	0.8687	-0.056	-0.028	34850.7	34047.3	33112.2	38347.4	37803.1	36667.3
J073	chr15	72208842	72218978	FALSE	LOW_COUNTS_INDEP_FILTER	0.8	0.217	0.6312	NA	NA	NA	0.9	2.0	0.0	0.0	0.0	2.0
J074	chr15	72208891	72209672	TRUE	OK	23007.2	0.00133	0.6569	0.9032	-0.030	-0.015	21503.4	22204.3	21364.9	24191.2	25062.0	23717.6
J075	chr15	72209844	72217483	TRUE	OK	7.6	0.02	0.9119	0.9789	-0.062	-0.031	10.2	7.9	3.3	5.9	8.4	10.1
J076	chr15	72209859	72210346	TRUE	OK	16498.0	0.00214	0.4677	0.836	-0.059	-0.030	16183.4	15328.1	15633.8	17483.7	17385.8	16973.4
J077	chr15	72210478	72217408	TRUE	OK	19054.1	0.00256	0.6168	0.8893	-0.046	-0.023	18466.8	17208.7	18520.4	20368.5	19958.5	19801.8
J078	chr15	72210478	72218943	TRUE	OK	4.2	0.0222	0.277	0.7614	0.698	0.349	2.6	3.0	3.3	4.9	4.2	7.1
J079	chr15	72217500	72218943	TRUE	OK	17755.4	0.0059	0.2683	0.7574	-0.144	-0.072	17921.8	16551.5	17694.6	19018.5	16848.4	18497.6
J080	chr15	72219110	72219389	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J081	chr15	72219110	72221167	TRUE	OK	21.8	0.00868	0.115	0.6547	0.473	0.237	17.9	15.8	16.6	20.8	25.1	34.3
J082	chr15	72219110	72222449	TRUE	OK	9.4	0.0295	0.2132	0.7314	-0.587	-0.294	10.2	13.9	7.8	9.9	11.5	3.0
J083	chr15	72219110	72228576	TRUE	OK	6.0	0.181	0.8831	0.9715	0.140	0.070	8.5	5.9	1.1	5.9	2.1	12.1
J084	chr15	72219110	72229546	TRUE	OK	10.5	0.00906	0.1403	0.6794	-0.585	-0.293	12.8	10.9	12.2	9.9	8.4	9.1
J085	chr15	72219110	72230895	TRUE	OK	65.0	0.00511	0.2139	0.7319	-0.238	-0.119	75.1	60.4	62.1	72.1	60.8	59.5
J086	chr15	72219110	72230899	TRUE	OK	32.0	0.00841	0.6208	0.8908	-0.131	-0.066	29.0	39.6	25.5	37.6	30.4	30.3
J087	chr15	72219110	72231115	TRUE	OK	10506.7	0.015	0.1067	0.6442	-0.321	-0.160	11219.1	10404.8	11130.9	11587.6	8228.3	10469.3
J088	chr15	72219110	72231323	TRUE	OK	80.1	0.0103	0.5887	0.8797	-0.114	-0.057	79.3	79.2	75.4	88.9	64.9	92.8
J089	chr15	72219110	72231598	FALSE	LOW_COUNTS_INDEP_FILTER	2.0	0.0447	0.8895	NA	NA	NA	2.6	2.0	1.1	1.0	2.1	3.0
J090	chr15	72219110	72231691	FALSE	LOW_COUNTS_INDEP_FILTER	0.9	0.12	0.2419	NA	NA	NA	0.0	1.0	0.0	0.0	2.1	2.0
J091	chr15	72221284	72230895	FALSE	LOW_COUNTS_INDEP_FILTER	2.3	0.051	0.2662	NA	NA	NA	3.4	4.0	1.1	0.0	2.1	3.0
J092	chr15	72221284	72231115	TRUE	OK	7.9	0.0128	0.3598	0.795	0.427	0.214	6.0	4.0	8.9	7.9	10.5	10.1
J093	chr15	72231391	72231598	FALSE	LOW_COUNTS_INDEP_FILTER	2.1	0.225	0.6624	NA	NA	NA	1.7	3.0	0.0	4.9	0.0	3.0
N094	chr15	72219110	72237390	TRUE	OK	18.9	0.0179	0.9735	0.9943	-0.011	-0.006	14.5	14.8	24.4	16.8	16.8	26.2

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000067225.18
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE