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Normalized Counts Table (ENSG00000059145.18)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr16	1363204	1363205	TRUE	OK	193.1	0.00713	0.2119	0.7305	-0.207	-0.104	196.2	176.2	141.9	186.8	265.0	192.7
E002	chr16	1363205	1364173	TRUE	OK	1009.1	0.0139	0.2484	0.749	0.261	0.130	804.4	789.9	717.2	1066.4	1621.6	1055.1
E003	chr16	1364173	1364255	TRUE	OK	265.2	0.00189	0.03817	0.4911	0.218	0.109	197.9	209.8	195.1	331.1	364.5	292.5
E004	chr16	1364255	1364998	TRUE	OK	744.5	0.00215	0.08068	0.6036	0.164	0.082	586.0	572.1	588.6	886.5	1033.9	799.9
E005	chr16	1364998	1365011	TRUE	OK	145.1	0.00633	0.8852	0.972	0.031	0.016	130.5	107.9	115.3	162.1	216.8	138.2
E006	chr16	1365011	1366017	TRUE	OK	717.4	0.00148	0.1888	0.7165	0.103	0.051	589.4	570.1	556.5	853.9	891.4	843.3
E007	chr16	1366017	1366148	TRUE	OK	260.4	0.00842	0.9046	0.9771	-0.036	-0.018	259.3	207.9	184.0	324.2	292.3	294.5
E008	chr16	1366148	1366277	TRUE	OK	289.7	0.0146	0.8335	0.9573	0.028	0.014	286.6	229.6	191.8	386.4	309.0	334.9
E009	chr16	1366277	1366395	TRUE	OK	308.7	0.0166	0.5348	0.8604	0.129	0.064	293.4	223.7	209.5	425.0	319.5	381.3
E010	chr16	1367091	1367241	TRUE	OK	294.3	0.00623	0.3408	0.7874	0.135	0.068	248.2	238.5	204.0	371.6	335.2	368.2
E011	chr16	1367241	1367291	TRUE	OK	296.6	0.0129	0.8062	0.9492	0.044	0.022	265.3	247.5	208.4	380.5	300.6	377.3
E012	chr16	1367291	1367349	TRUE	OK	296.5	0.0117	0.5725	0.8742	0.103	0.052	252.5	249.4	202.9	375.5	311.1	387.3
E013	chr16	1367655	1367712	TRUE	OK	244.6	0.00845	0.7379	0.9289	0.053	0.027	202.2	209.8	180.7	311.3	258.7	304.6
E014	chr16	1367712	1367858	TRUE	OK	205.5	0.00252	0.4592	0.8326	-0.093	-0.046	169.7	183.1	174.0	232.2	234.6	239.1
E015	chr16	1367858	1368203	TRUE	OK	49.1	0.0049	0.0194	0.383	-0.486	-0.243	46.1	58.4	41.0	49.4	53.4	46.4
E016	chr16	1369933	1370129	TRUE	OK	22.0	0.0169	0.5577	0.8687	-0.198	-0.099	14.5	21.8	23.3	28.7	18.9	25.2
E017	chr16	1370129	1370232	TRUE	OK	185.4	0.00312	0.5983	0.8829	0.063	0.032	156.1	140.6	150.8	234.2	216.8	213.8
E018	chr16	1370232	1370357	TRUE	OK	199.9	0.00578	0.5644	0.8712	0.082	0.041	164.6	137.6	177.4	247.1	232.6	240.1
E019	chr16	1371518	1371611	TRUE	OK	180.3	0.00771	0.9584	0.9908	-0.003	-0.001	168.9	119.8	157.4	224.3	208.5	202.7
E020	chr16	1378913	1379121	TRUE	OK	39.2	0.0261	0.06389	0.5695	0.632	0.316	24.7	28.7	20.0	53.4	38.8	69.6
E021	chr16	1379121	1379176	TRUE	OK	21.6	0.0424	0.2857	0.7649	0.464	0.232	11.9	20.8	11.1	33.6	17.8	34.3
E022	chr16	1379532	1379593	TRUE	OK	75.7	0.0128	0.1175	0.6573	0.356	0.178	59.7	38.6	63.2	104.8	89.0	98.9
E023	chr16	1379593	1379645	TRUE	OK	57.7	0.0287	0.7499	0.9328	0.085	0.043	52.9	29.7	55.4	82.0	54.5	71.6
E024	chr16	1379645	1379680	TRUE	OK	14.2	0.063	0.2341	0.7425	0.580	0.290	11.9	2.0	13.3	15.8	18.9	23.2
E025	chr16	1379680	1379683	FALSE	LOW_COUNTS_INDEP_FILTER	1.9	0.541	0.4996	NA	NA	NA	2.6	0.0	0.0	6.9	0.0	2.0
E026	chr16	1385207	1385385	TRUE	OK	40.2	0.0625	0.0002731	0.03268	-1.632	-0.816	60.6	48.5	55.4	26.7	10.5	39.3
E027	chr16	1390631	1390694	TRUE	OK	39.3	0.00792	1.644e-12	2.332e-09	-1.751	-0.875	57.1	51.5	56.5	26.7	15.7	28.2
E028	chr16	1392890	1392976	TRUE	OK	42.7	0.0145	1.076e-09	8.78e-07	-1.694	-0.847	56.3	51.5	69.8	33.6	19.9	25.2
E029	chr16	1394130	1394215	TRUE	OK	36.3	0.00559	3.23e-17	9.162e-14	-2.066	-1.033	53.7	48.5	59.9	20.8	19.9	15.1
E030	chr16	1397044	1397177	FALSE	LOW_COUNTS_INDEP_FILTER	0.1	0.846	0.4869	NA	NA	NA	0.9	0.0	0.0	0.0	0.0	0.0
E031	chr16	1397177	1397295	TRUE	OK	29.3	0.00692	3.692e-13	5.86e-10	-1.966	-0.983	47.8	38.6	42.1	20.8	13.6	13.1
E032	chr16	1398304	1398941	TRUE	OK	45.1	0.00792	2.225e-05	0.004649	-0.977	-0.489	52.9	44.5	58.8	29.6	51.3	33.3
E033	chr16	1399139	1399373	TRUE	OK	6.3	0.147	0.878	0.9699	0.007	0.004	3.4	10.9	1.1	11.9	5.2	5.0
E034	chr16	1399373	1399508	TRUE	OK	68.2	0.00725	4.308e-14	8.235e-11	-1.559	-0.780	96.4	89.1	88.7	55.3	35.6	44.4
E035	chr16	1399508	1399509	TRUE	OK	46.1	0.00721	1.682e-10	1.658e-07	-1.463	-0.732	62.3	57.4	62.1	36.6	23.0	35.3
E036	chr16	1401336	1401476	FALSE	LOW_COUNTS_INDEP_FILTER	0.9	0.249	0.353	NA	NA	NA	2.6	1.0	0.0	2.0	0.0	0.0
E037	chr16	1401567	1401701	TRUE	OK	63.1	0.00465	1.9e-13	3.213e-10	-1.408	-0.704	88.7	69.3	86.5	43.5	42.9	47.4
E038	chr16	1403167	1403190	TRUE	OK	43.7	0.00486	3.459e-13	5.591e-10	-1.593	-0.796	64.0	53.4	59.9	32.6	26.2	26.2
E039	chr16	1403190	1403207	TRUE	OK	41.0	0.00545	6.858e-12	8.817e-09	-1.562	-0.781	63.1	48.5	53.2	30.6	26.2	24.2
E040	chr16	1403207	1403236	TRUE	OK	46.4	0.00507	1.291e-11	1.586e-08	-1.454	-0.727	65.7	55.4	61.0	38.5	29.3	28.2
E041	chr16	1403236	1403344	TRUE	OK	63.4	0.0359	4.016e-06	0.001152	-1.621	-0.811	95.5	65.3	97.6	60.3	30.4	31.3
E042	chr16	1407266	1407341	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E043	chr16	1413845	1414009	TRUE	OK	58.8	0.0458	1.105e-05	0.002652	-1.701	-0.850	80.2	64.3	99.8	57.3	28.3	23.2
E044	chr16	1414009	1414055	TRUE	OK	35.6	0.0632	8.689e-05	0.0137	-1.831	-0.915	52.0	34.6	65.4	34.6	14.7	12.1
E045	chr16	1414055	1414078	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.13	0.4756	NA	NA	NA	0.0	2.0	2.2	1.0	2.1	0.0
E046	chr16	1414614	1414691	TRUE	OK	35.4	0.0672	0.0001004	0.01539	-1.855	-0.928	52.0	34.6	65.4	34.6	14.7	11.1
E047	chr16	1414691	1414695	TRUE	OK	5.8	0.0962	0.03782	0.4896	-1.617	-0.808	12.8	2.0	8.9	4.0	5.2	2.0
E048	chr16	1414695	1414697	TRUE	OK	3.4	0.141	0.2592	0.7531	-1.135	-0.567	6.8	0.0	5.5	2.0	4.2	2.0
E049	chr16	1414697	1414720	FALSE	LOW_COUNTS_INDEP_FILTER	1.4	0.173	0.09987	NA	NA	NA	4.3	0.0	2.2	1.0	0.0	1.0
E050	chr16	1414720	1414751	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.239	0.7709	NA	NA	NA	0.9	0.0	0.0	1.0	0.0	1.0
J051	chr16	1364255	1366017	TRUE	OK	14.9	0.019	0.1741	0.7063	-0.538	-0.269	21.3	9.9	13.3	10.9	16.8	17.1
J052	chr16	1366395	1367091	TRUE	OK	126.8	0.0034	0.07711	0.5977	0.254	0.127	100.7	91.1	90.9	175.9	157.1	145.3
J053	chr16	1366395	1367241	TRUE	OK	65.6	0.0257	0.7738	0.9401	0.082	0.041	65.7	46.5	44.3	93.9	57.6	85.7
J054	chr16	1367349	1367655	TRUE	OK	203.6	0.0149	0.9792	0.9958	-0.002	-0.001	173.2	170.2	160.7	268.8	191.7	257.2
J055	chr16	1367858	1369933	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.256	0.1591	NA	NA	NA	0.0	1.0	1.1	0.0	0.0	0.0
J056	chr16	1367858	1370129	TRUE	OK	78.0	0.00241	0.7256	0.9254	-0.062	-0.031	68.2	71.3	57.6	89.9	90.1	90.8
J057	chr16	1370357	1371518	TRUE	OK	121.2	0.00394	0.3749	0.8005	0.128	0.064	102.4	77.2	105.3	147.3	148.7	146.3
J058	chr16	1370357	1378913	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.519	0.7035	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	0.0
J059	chr16	1371611	1378913	TRUE	OK	3.4	0.0538	0.0006788	0.06078	3.801	1.901	0.0	1.0	0.0	3.0	7.3	9.1
J060	chr16	1371611	1379532	TRUE	OK	52.2	0.0074	0.08315	0.6086	0.378	0.189	39.2	26.7	44.3	71.2	63.9	67.6
J061	chr16	1371611	1379593	TRUE	OK	6.8	0.0656	0.9616	0.9917	0.039	0.020	6.0	3.0	7.8	10.9	3.1	10.1
J062	chr16	1371611	1385207	TRUE	OK	13.4	0.0482	0.0002535	0.03096	-1.816	-0.908	20.5	17.8	18.8	5.9	3.1	14.1
J063	chr16	1385385	1390631	TRUE	OK	27.6	0.0541	0.0001008	0.01543	-1.762	-0.881	46.1	34.6	35.5	20.8	6.3	22.2
J064	chr16	1390694	1392890	TRUE	OK	30.7	0.0117	4.863e-10	4.337e-07	-1.801	-0.900	39.2	39.6	52.1	20.8	12.6	20.2
J065	chr16	1392976	1394130	TRUE	OK	27.8	0.0061	1.088e-11	1.351e-08	-1.832	-0.916	36.7	34.6	47.7	17.8	16.8	13.1
J066	chr16	1394215	1397177	TRUE	OK	21.8	0.00706	1.154e-10	1.191e-07	-1.948	-0.974	33.3	27.7	34.4	16.8	11.5	7.1
J067	chr16	1397295	1399373	TRUE	OK	14.2	0.00934	3.25e-09	2.346e-06	-2.220	-1.110	26.4	21.8	16.6	8.9	5.2	6.1
J068	chr16	1398941	1399373	TRUE	OK	15.5	0.0178	0.002576	0.1401	-1.123	-0.562	15.4	17.8	23.3	10.9	18.9	7.1
J069	chr16	1399509	1401567	TRUE	OK	41.5	0.00694	1.663e-10	1.647e-07	-1.504	-0.752	57.1	49.5	58.8	28.7	21.0	34.3
J070	chr16	1401476	1401567	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J071	chr16	1401701	1403167	TRUE	OK	35.7	0.00431	3.11e-10	2.897e-07	-1.453	-0.727	53.7	39.6	46.6	22.7	25.1	26.2
J072	chr16	1403344	1407266	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J073	chr16	1403344	1413845	TRUE	OK	33.8	0.0395	9.82e-05	0.01514	-1.525	-0.762	48.6	33.7	53.2	34.6	16.8	16.1
J074	chr16	1414009	1414614	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.196	0.1827	NA	NA	NA	0.0	0.0	0.0	1.0	2.1	0.0
J075	chr16	1414055	1414614	TRUE	OK	28.4	0.0915	0.0003968	0.04232	-1.938	-0.969	41.8	27.7	54.3	27.7	12.6	6.1
N076	chr16	1363215	1363412	TRUE	OK	16.3	0.0587	0.6916	0.9146	-0.150	-0.075	16.2	9.9	16.6	7.9	19.9	27.2
N077	chr16	1367349	1367664	TRUE	OK	16.8	0.111	0.4204	0.8184	0.322	0.161	11.1	22.8	2.2	22.7	22.0	20.2

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000059145.18
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE