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Raw Counts Table (ENSG00000059145.18)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Raw Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr16	1363204	1363205	TRUE	OK	193.1	0.00713	0.2119	0.7305	-0.207	-0.104	230.0	178.0	128.0	189.0	253.0	191.0
E002	chr16	1363205	1364173	TRUE	OK	1009.1	0.0139	0.2484	0.749	0.261	0.130	943.0	798.0	647.0	1079.0	1548.0	1046.0
E003	chr16	1364173	1364255	TRUE	OK	265.2	0.00189	0.03817	0.4911	0.218	0.109	232.0	212.0	176.0	335.0	348.0	290.0
E004	chr16	1364255	1364998	TRUE	OK	744.5	0.00215	0.08068	0.6036	0.164	0.082	687.0	578.0	531.0	897.0	987.0	793.0
E005	chr16	1364998	1365011	TRUE	OK	145.1	0.00633	0.8852	0.972	0.031	0.016	153.0	109.0	104.0	164.0	207.0	137.0
E006	chr16	1365011	1366017	TRUE	OK	717.4	0.00148	0.1888	0.7165	0.103	0.051	691.0	576.0	502.0	864.0	851.0	836.0
E007	chr16	1366017	1366148	TRUE	OK	260.4	0.00842	0.9046	0.9771	-0.036	-0.018	304.0	210.0	166.0	328.0	279.0	292.0
E008	chr16	1366148	1366277	TRUE	OK	289.7	0.0146	0.8335	0.9573	0.028	0.014	336.0	232.0	173.0	391.0	295.0	332.0
E009	chr16	1366277	1366395	TRUE	OK	308.7	0.0166	0.5348	0.8604	0.129	0.064	344.0	226.0	189.0	430.0	305.0	378.0
E010	chr16	1367091	1367241	TRUE	OK	294.3	0.00623	0.3408	0.7874	0.135	0.068	291.0	241.0	184.0	376.0	320.0	365.0
E011	chr16	1367241	1367291	TRUE	OK	296.6	0.0129	0.8062	0.9492	0.044	0.022	311.0	250.0	188.0	385.0	287.0	374.0
E012	chr16	1367291	1367349	TRUE	OK	296.5	0.0117	0.5725	0.8742	0.103	0.052	296.0	252.0	183.0	380.0	297.0	384.0
E013	chr16	1367655	1367712	TRUE	OK	244.6	0.00845	0.7379	0.9289	0.053	0.027	237.0	212.0	163.0	315.0	247.0	302.0
E014	chr16	1367712	1367858	TRUE	OK	205.5	0.00252	0.4592	0.8326	-0.093	-0.046	199.0	185.0	157.0	235.0	224.0	237.0
E015	chr16	1367858	1368203	TRUE	OK	49.1	0.0049	0.0194	0.383	-0.486	-0.243	54.0	59.0	37.0	50.0	51.0	46.0
E016	chr16	1369933	1370129	TRUE	OK	22.0	0.0169	0.5577	0.8687	-0.198	-0.099	17.0	22.0	21.0	29.0	18.0	25.0
E017	chr16	1370129	1370232	TRUE	OK	185.4	0.00312	0.5983	0.8829	0.063	0.032	183.0	142.0	136.0	237.0	207.0	212.0
E018	chr16	1370232	1370357	TRUE	OK	199.9	0.00578	0.5644	0.8712	0.082	0.041	193.0	139.0	160.0	250.0	222.0	238.0
E019	chr16	1371518	1371611	TRUE	OK	180.3	0.00771	0.9584	0.9908	-0.003	-0.001	198.0	121.0	142.0	227.0	199.0	201.0
E020	chr16	1378913	1379121	TRUE	OK	39.2	0.0261	0.06389	0.5695	0.632	0.316	29.0	29.0	18.0	54.0	37.0	69.0
E021	chr16	1379121	1379176	TRUE	OK	21.6	0.0424	0.2857	0.7649	0.464	0.232	14.0	21.0	10.0	34.0	17.0	34.0
E022	chr16	1379532	1379593	TRUE	OK	75.7	0.0128	0.1175	0.6573	0.356	0.178	70.0	39.0	57.0	106.0	85.0	98.0
E023	chr16	1379593	1379645	TRUE	OK	57.7	0.0287	0.7499	0.9328	0.085	0.043	62.0	30.0	50.0	83.0	52.0	71.0
E024	chr16	1379645	1379680	TRUE	OK	14.2	0.063	0.2341	0.7425	0.580	0.290	14.0	2.0	12.0	16.0	18.0	23.0
E025	chr16	1379680	1379683	FALSE	LOW_COUNTS_INDEP_FILTER	1.9	0.541	0.4996	NA	NA	NA	3.0	0.0	0.0	7.0	0.0	2.0
E026	chr16	1385207	1385385	TRUE	OK	40.2	0.0625	0.0002731	0.03268	-1.632	-0.816	71.0	49.0	50.0	27.0	10.0	39.0
E027	chr16	1390631	1390694	TRUE	OK	39.3	0.00792	1.644e-12	2.332e-09	-1.751	-0.875	67.0	52.0	51.0	27.0	15.0	28.0
E028	chr16	1392890	1392976	TRUE	OK	42.7	0.0145	1.076e-09	8.78e-07	-1.694	-0.847	66.0	52.0	63.0	34.0	19.0	25.0
E029	chr16	1394130	1394215	TRUE	OK	36.3	0.00559	3.23e-17	9.162e-14	-2.066	-1.033	63.0	49.0	54.0	21.0	19.0	15.0
E030	chr16	1397044	1397177	FALSE	LOW_COUNTS_INDEP_FILTER	0.1	0.846	0.4869	NA	NA	NA	1.0	0.0	0.0	0.0	0.0	0.0
E031	chr16	1397177	1397295	TRUE	OK	29.3	0.00692	3.692e-13	5.86e-10	-1.966	-0.983	56.0	39.0	38.0	21.0	13.0	13.0
E032	chr16	1398304	1398941	TRUE	OK	45.1	0.00792	2.225e-05	0.004649	-0.977	-0.489	62.0	45.0	53.0	30.0	49.0	33.0
E033	chr16	1399139	1399373	TRUE	OK	6.3	0.147	0.878	0.9699	0.007	0.004	4.0	11.0	1.0	12.0	5.0	5.0
E034	chr16	1399373	1399508	TRUE	OK	68.2	0.00725	4.308e-14	8.235e-11	-1.559	-0.780	113.0	90.0	80.0	56.0	34.0	44.0
E035	chr16	1399508	1399509	TRUE	OK	46.1	0.00721	1.682e-10	1.658e-07	-1.463	-0.732	73.0	58.0	56.0	37.0	22.0	35.0
E036	chr16	1401336	1401476	FALSE	LOW_COUNTS_INDEP_FILTER	0.9	0.249	0.353	NA	NA	NA	3.0	1.0	0.0	2.0	0.0	0.0
E037	chr16	1401567	1401701	TRUE	OK	63.1	0.00465	1.9e-13	3.213e-10	-1.408	-0.704	104.0	70.0	78.0	44.0	41.0	47.0
E038	chr16	1403167	1403190	TRUE	OK	43.7	0.00486	3.459e-13	5.591e-10	-1.593	-0.796	75.0	54.0	54.0	33.0	25.0	26.0
E039	chr16	1403190	1403207	TRUE	OK	41.0	0.00545	6.858e-12	8.817e-09	-1.562	-0.781	74.0	49.0	48.0	31.0	25.0	24.0
E040	chr16	1403207	1403236	TRUE	OK	46.4	0.00507	1.291e-11	1.586e-08	-1.454	-0.727	77.0	56.0	55.0	39.0	28.0	28.0
E041	chr16	1403236	1403344	TRUE	OK	63.4	0.0359	4.016e-06	0.001152	-1.621	-0.811	112.0	66.0	88.0	61.0	29.0	31.0
E042	chr16	1407266	1407341	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
E043	chr16	1413845	1414009	TRUE	OK	58.8	0.0458	1.105e-05	0.002652	-1.701	-0.850	94.0	65.0	90.0	58.0	27.0	23.0
E044	chr16	1414009	1414055	TRUE	OK	35.6	0.0632	8.689e-05	0.0137	-1.831	-0.915	61.0	35.0	59.0	35.0	14.0	12.0
E045	chr16	1414055	1414078	FALSE	LOW_COUNTS_INDEP_FILTER	1.2	0.13	0.4756	NA	NA	NA	0.0	2.0	2.0	1.0	2.0	0.0
E046	chr16	1414614	1414691	TRUE	OK	35.4	0.0672	0.0001004	0.01539	-1.855	-0.928	61.0	35.0	59.0	35.0	14.0	11.0
E047	chr16	1414691	1414695	TRUE	OK	5.8	0.0962	0.03782	0.4896	-1.617	-0.808	15.0	2.0	8.0	4.0	5.0	2.0
E048	chr16	1414695	1414697	TRUE	OK	3.4	0.141	0.2592	0.7531	-1.135	-0.567	8.0	0.0	5.0	2.0	4.0	2.0
E049	chr16	1414697	1414720	FALSE	LOW_COUNTS_INDEP_FILTER	1.4	0.173	0.09987	NA	NA	NA	5.0	0.0	2.0	1.0	0.0	1.0
E050	chr16	1414720	1414751	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.239	0.7709	NA	NA	NA	1.0	0.0	0.0	1.0	0.0	1.0
J051	chr16	1364255	1366017	TRUE	OK	14.9	0.019	0.1741	0.7063	-0.538	-0.269	25.0	10.0	12.0	11.0	16.0	17.0
J052	chr16	1366395	1367091	TRUE	OK	126.8	0.0034	0.07711	0.5977	0.254	0.127	118.0	92.0	82.0	178.0	150.0	144.0
J053	chr16	1366395	1367241	TRUE	OK	65.6	0.0257	0.7738	0.9401	0.082	0.041	77.0	47.0	40.0	95.0	55.0	85.0
J054	chr16	1367349	1367655	TRUE	OK	203.6	0.0149	0.9792	0.9958	-0.002	-0.001	203.0	172.0	145.0	272.0	183.0	255.0
J055	chr16	1367858	1369933	FALSE	LOW_COUNTS_INDEP_FILTER	0.3	0.256	0.1591	NA	NA	NA	0.0	1.0	1.0	0.0	0.0	0.0
J056	chr16	1367858	1370129	TRUE	OK	78.0	0.00241	0.7256	0.9254	-0.062	-0.031	80.0	72.0	52.0	91.0	86.0	90.0
J057	chr16	1370357	1371518	TRUE	OK	121.2	0.00394	0.3749	0.8005	0.128	0.064	120.0	78.0	95.0	149.0	142.0	145.0
J058	chr16	1370357	1378913	FALSE	LOW_COUNTS_INDEP_FILTER	0.2	0.519	0.7035	NA	NA	NA	0.0	0.0	0.0	0.0	1.0	0.0
J059	chr16	1371611	1378913	TRUE	OK	3.4	0.0538	0.0006788	0.06078	3.801	1.901	0.0	1.0	0.0	3.0	7.0	9.0
J060	chr16	1371611	1379532	TRUE	OK	52.2	0.0074	0.08315	0.6086	0.378	0.189	46.0	27.0	40.0	72.0	61.0	67.0
J061	chr16	1371611	1379593	TRUE	OK	6.8	0.0656	0.9616	0.9917	0.039	0.020	7.0	3.0	7.0	11.0	3.0	10.0
J062	chr16	1371611	1385207	TRUE	OK	13.4	0.0482	0.0002535	0.03096	-1.816	-0.908	24.0	18.0	17.0	6.0	3.0	14.0
J063	chr16	1385385	1390631	TRUE	OK	27.6	0.0541	0.0001008	0.01543	-1.762	-0.881	54.0	35.0	32.0	21.0	6.0	22.0
J064	chr16	1390694	1392890	TRUE	OK	30.7	0.0117	4.863e-10	4.337e-07	-1.801	-0.900	46.0	40.0	47.0	21.0	12.0	20.0
J065	chr16	1392976	1394130	TRUE	OK	27.8	0.0061	1.088e-11	1.351e-08	-1.832	-0.916	43.0	35.0	43.0	18.0	16.0	13.0
J066	chr16	1394215	1397177	TRUE	OK	21.8	0.00706	1.154e-10	1.191e-07	-1.948	-0.974	39.0	28.0	31.0	17.0	11.0	7.0
J067	chr16	1397295	1399373	TRUE	OK	14.2	0.00934	3.25e-09	2.346e-06	-2.220	-1.110	31.0	22.0	15.0	9.0	5.0	6.0
J068	chr16	1398941	1399373	TRUE	OK	15.5	0.0178	0.002576	0.1401	-1.123	-0.562	18.0	18.0	21.0	11.0	18.0	7.0
J069	chr16	1399509	1401567	TRUE	OK	41.5	0.00694	1.663e-10	1.647e-07	-1.504	-0.752	67.0	50.0	53.0	29.0	20.0	34.0
J070	chr16	1401476	1401567	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J071	chr16	1401701	1403167	TRUE	OK	35.7	0.00431	3.11e-10	2.897e-07	-1.453	-0.727	63.0	40.0	42.0	23.0	24.0	26.0
J072	chr16	1403344	1407266	FALSE	ALL_ZERO	0.0	NA	NA	NA	NA	NA	0.0	0.0	0.0	0.0	0.0	0.0
J073	chr16	1403344	1413845	TRUE	OK	33.8	0.0395	9.82e-05	0.01514	-1.525	-0.762	57.0	34.0	48.0	35.0	16.0	16.0
J074	chr16	1414009	1414614	FALSE	LOW_COUNTS_INDEP_FILTER	0.5	0.196	0.1827	NA	NA	NA	0.0	0.0	0.0	1.0	2.0	0.0
J075	chr16	1414055	1414614	TRUE	OK	28.4	0.0915	0.0003968	0.04232	-1.938	-0.969	49.0	28.0	49.0	28.0	12.0	6.0
N076	chr16	1363215	1363412	TRUE	OK	16.3	0.0587	0.6916	0.9146	-0.150	-0.075	19.0	10.0	15.0	8.0	19.0	27.0
N077	chr16	1367349	1367664	TRUE	OK	16.8	0.111	0.4204	0.8184	0.322	0.161	13.0	23.0	2.0	23.0	21.0	20.0

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000059145.18
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE