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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr2 | 172480839 | 172481021 | TRUE | OK | 12.1 | 0.0314 | 0.7442 | 0.9337 | -0.139 | -0.070 | 13.8 | 14.6 | 7.1 | 16.9 | 10.8 | 9.7 |
E002 | chr2 | 172495374 | 172495516 | TRUE | OK | 16.7 | 0.0434 | 0.8026 | 0.9506 | -0.112 | -0.056 | 22.7 | 14.6 | 11.1 | 19.9 | 22.5 | 9.7 |
E003 | chr2 | 172503438 | 172504142 | TRUE | OK | 3129.9 | 0.0375 | 0.341 | 0.8043 | 0.259 | 0.126 | 3130.6 | 2431.6 | 3081.1 | 3391.4 | 3130.8 | 3614.0 |
E004 | chr2 | 172509028 | 172509294 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.609 | 0.6825 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 3.0 | 0.0 | 0.0 |
E005 | chr2 | 172509602 | 172509813 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.297 | 0.09065 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 2.9 | 5.8 |
E006 | chr2 | 172512333 | 172512510 | TRUE | OK | 48.6 | 0.00878 | 0.5662 | 0.877 | -0.131 | -0.066 | 42.4 | 44.8 | 54.4 | 50.6 | 56.8 | 42.5 |
E007 | chr2 | 172512510 | 172512518 | TRUE | OK | 18.4 | 0.0186 | 0.6021 | 0.8886 | -0.182 | -0.091 | 13.8 | 19.8 | 21.2 | 16.9 | 23.5 | 15.5 |
E008 | chr2 | 172552614 | 172552708 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0772 | 0.1052 | NA | NA | NA | 2.0 | 2.1 | 4.0 | 1.0 | 0.0 | 1.9 |
E009 | chr2 | 172555425 | 172555580 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.1 | 0.0245 | 0.6725 | NA | NA | NA | 8.9 | 6.3 | 3.0 | 8.9 | 5.9 | 9.7 |
E010 | chr2 | 172556088 | 172556407 | TRUE | OK | 198.8 | 0.0502 | 0.3057 | 0.7932 | -0.312 | -0.156 | 215.9 | 183.5 | 213.5 | 228.3 | 248.7 | 102.5 |
E011 | chr2 | 172556407 | 172556408 | TRUE | OK | 10.9 | 0.0477 | 0.7363 | 0.9316 | 0.187 | 0.094 | 12.8 | 7.3 | 8.1 | 13.9 | 17.6 | 5.8 |
E012 | chr2 | 172556408 | 172556529 | TRUE | OK | 11.4 | 0.0469 | 0.7015 | 0.9203 | 0.211 | 0.105 | 12.8 | 7.3 | 9.1 | 15.9 | 17.6 | 5.8 |
E013 | chr2 | 172556529 | 172556596 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.102 | 0.9005 | NA | NA | NA | 1.0 | 1.0 | 1.0 | 2.0 | 1.0 | 1.0 |
J014 | chr2 | 172481021 | 172495374 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.38 | 0.1415 | NA | NA | NA | 3.9 | 4.2 | 0.0 | 2.0 | 0.0 | 0.0 |
J015 | chr2 | 172495516 | 172512333 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.1 | 0.0748 | 0.8752 | NA | NA | NA | 15.8 | 4.2 | 5.0 | 12.9 | 10.8 | 5.8 |
J016 | chr2 | 172504142 | 172512333 | TRUE | OK | 23.0 | 0.0135 | 0.7423 | 0.9333 | -0.114 | -0.057 | 15.8 | 18.8 | 32.2 | 23.8 | 22.5 | 25.1 |
J017 | chr2 | 172509294 | 172509602 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J018 | chr2 | 172509813 | 172512333 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.883 | 0.4098 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 2.9 | 0.0 |
J019 | chr2 | 172512518 | 172556088 | TRUE | OK | 13.9 | 0.0289 | 0.7492 | 0.935 | -0.122 | -0.061 | 10.8 | 14.6 | 15.1 | 12.9 | 20.6 | 9.7 |
J020 | chr2 | 172552708 | 172556088 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.174 | 0.4956 | NA | NA | NA | 1.0 | 1.0 | 0.0 | 1.0 | 0.0 | 0.0 |
J021 | chr2 | 172555580 | 172556088 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.267 | 0.9152 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
N022 | chr2 | 172480051 | 172484781 | TRUE | OK | 2809.4 | 0.137 | 0.4366 | 0.835 | 0.555 | 0.275 | 3055.6 | 1704.8 | 2783.0 | 3317.9 | 2772.3 | 3222.5 |
N023 | chr2 | 172484942 | 172485120 | TRUE | OK | 3111.4 | 1.6 | 0.2436 | 0.7735 | 1.997 | 0.970 | 3205.5 | 1956.1 | 2968.3 | 3766.6 | 3128.8 | 3643.0 |
N024 | chr2 | 172485264 | 172487022 | TRUE | OK | 2274.0 | 0.0332 | 0.2537 | 0.7768 | 0.325 | 0.162 | 2359.5 | 1440.0 | 2274.3 | 2680.5 | 2231.8 | 2657.8 |
N025 | chr2 | 172487138 | 172487263 | TRUE | OK | 3336.8 | 3.55 | 0.3992 | 0.8238 | -0.388 | -0.186 | 3841.5 | 2243.9 | 3316.8 | 4052.6 | 3065.1 | 3500.9 |
N026 | chr2 | 172487453 | 172487546 | TRUE | OK | 2294.5 | 0.00489 | 0.1139 | 0.7116 | 0.190 | 0.095 | 2312.2 | 1695.5 | 2228.0 | 2615.0 | 2286.6 | 2629.8 |
N027 | chr2 | 172487630 | 172487727 | TRUE | OK | 3052.3 | 0.0579 | 2.139e-05 | 0.01007 | 1.747 | 0.853 | 3031.0 | 2062.5 | 2905.8 | 3545.3 | 3223.8 | 3545.4 |
N028 | chr2 | 172487807 | 172487960 | TRUE | OK | 2705.0 | 0.0337 | 0.0007416 | 0.1115 | 1.026 | 0.508 | 2680.0 | 1786.2 | 2494.9 | 3237.5 | 2782.1 | 3249.5 |
N029 | chr2 | 172488038 | 172488125 | TRUE | OK | 2739.0 | 0.0173 | 7.925e-08 | 0.0001008 | 1.194 | 0.591 | 2610.0 | 1874.8 | 2508.0 | 3291.1 | 2891.8 | 3258.2 |
N030 | chr2 | 172488228 | 172489484 | TRUE | OK | 2965.3 | 0.059 | 0.003961 | 0.2652 | 1.127 | 0.555 | 2968.9 | 2090.7 | 2778.9 | 3495.6 | 3061.2 | 3396.5 |
N031 | chr2 | 172488228 | 172491023 | TRUE | OK | 48.0 | 0.00315 | 0.7417 | 0.9331 | 0.063 | 0.032 | 49.3 | 40.7 | 40.3 | 51.6 | 51.9 | 54.1 |
N032 | chr2 | 172489613 | 172491023 | TRUE | OK | 144.1 | 0.00217 | 0.8959 | 0.9751 | 0.013 | 0.006 | 132.1 | 109.5 | 157.1 | 150.9 | 155.7 | 159.5 |
N033 | chr2 | 172489658 | 172491023 | TRUE | OK | 2972.4 | 0.0111 | 7.977e-10 | 1.785e-06 | 1.141 | 0.561 | 2933.4 | 2170.9 | 2755.8 | 3331.8 | 3166.0 | 3476.7 |
N034 | chr2 | 172491122 | 172491220 | TRUE | OK | 3099.6 | 0.0374 | 2.031e-09 | 4.082e-06 | 1.958 | 0.951 | 2935.3 | 2343.0 | 2878.6 | 3532.3 | 3345.2 | 3562.8 |
N035 | chr2 | 172491331 | 172491424 | TRUE | OK | 2738.5 | 0.0229 | 0.3579 | 0.8102 | 0.245 | 0.121 | 2612.9 | 2179.3 | 2692.3 | 3180.9 | 2688.1 | 3077.4 |
N036 | chr2 | 172491523 | 172497974 | TRUE | OK | 2517.2 | 0.00774 | 0.45 | 0.8396 | 0.120 | 0.060 | 2457.1 | 1990.6 | 2471.7 | 2897.0 | 2507.0 | 2779.7 |
N037 | chr2 | 172498100 | 172501771 | TRUE | OK | 1794.4 | 0.0109 | 0.5144 | 0.8606 | -0.113 | -0.056 | 1961.2 | 1425.4 | 1700.2 | 2046.1 | 1623.6 | 2010.1 |
N038 | chr2 | 172498100 | 172504090 | TRUE | OK | 212.0 | 0.00124 | 0.01998 | 0.4918 | -0.238 | -0.119 | 217.9 | 187.7 | 232.7 | 213.4 | 199.8 | 220.4 |
N039 | chr2 | 172501901 | 172504090 | TRUE | OK | 2004.5 | 0.00338 | 0.8805 | 0.9712 | 0.019 | 0.009 | 2043.0 | 1569.3 | 1944.9 | 2226.8 | 1933.1 | 2309.8 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000225205.5 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |