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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr2 | 178413938 | 178413944 | TRUE | OK | 28.8 | 0.0504 | 0.168 | 0.7432 | 0.526 | 0.263 | 35.5 | 11.5 | 13.1 | 31.8 | 34.3 | 46.4 |
E002 | chr2 | 178413944 | 178413967 | TRUE | OK | 37.0 | 0.0278 | 0.1899 | 0.7538 | 0.415 | 0.207 | 42.4 | 19.8 | 19.1 | 37.7 | 49.0 | 54.1 |
E003 | chr2 | 178413967 | 178413986 | TRUE | OK | 94.6 | 0.00948 | 0.01571 | 0.4545 | 0.502 | 0.251 | 80.9 | 54.2 | 66.5 | 116.2 | 103.8 | 146.0 |
E004 | chr2 | 178413986 | 178413993 | TRUE | OK | 118.7 | 0.00509 | 0.05301 | 0.633 | 0.319 | 0.160 | 102.5 | 77.2 | 93.7 | 150.9 | 126.3 | 161.5 |
E005 | chr2 | 178413993 | 178413998 | TRUE | OK | 137.2 | 0.00447 | 0.07182 | 0.6658 | 0.277 | 0.138 | 124.2 | 94.9 | 102.7 | 173.7 | 144.9 | 182.7 |
E006 | chr2 | 178413998 | 178414022 | TRUE | OK | 177.0 | 0.005 | 0.07559 | 0.6716 | 0.268 | 0.134 | 162.7 | 128.3 | 126.9 | 225.4 | 185.1 | 234.0 |
E007 | chr2 | 178414022 | 178414113 | TRUE | OK | 250.4 | 0.00398 | 0.004708 | 0.2877 | 0.372 | 0.186 | 222.8 | 161.6 | 186.3 | 309.8 | 294.8 | 326.8 |
E008 | chr2 | 178415817 | 178415963 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.6 | 0.106 | 0.5303 | NA | NA | NA | 4.9 | 3.1 | 3.0 | 1.0 | 2.0 | 7.7 |
E009 | chr2 | 178418510 | 178419123 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.0584 | 0.1302 | NA | NA | NA | 2.0 | 1.0 | 0.0 | 4.0 | 3.9 | 2.9 |
E010 | chr2 | 178426365 | 178426505 | TRUE | OK | 307.9 | 0.00721 | 0.04465 | 0.6092 | 0.313 | 0.156 | 288.9 | 198.1 | 233.7 | 367.3 | 353.5 | 406.1 |
E011 | chr2 | 178426505 | 178426661 | TRUE | OK | 167.2 | 0.0088 | 0.03221 | 0.562 | 0.383 | 0.191 | 159.7 | 102.2 | 114.8 | 227.3 | 193.9 | 205.0 |
E012 | chr2 | 178426661 | 178426703 | TRUE | OK | 78.2 | 0.0036 | 0.009612 | 0.3871 | 0.444 | 0.222 | 65.1 | 48.0 | 57.4 | 104.2 | 93.0 | 101.5 |
E013 | chr2 | 178430655 | 178430677 | TRUE | OK | 30.1 | 0.0408 | 0.2035 | 0.759 | 0.480 | 0.240 | 32.5 | 10.4 | 21.2 | 28.8 | 40.2 | 47.4 |
E014 | chr2 | 178430677 | 178430694 | TRUE | OK | 51.2 | 0.0137 | 0.04696 | 0.6166 | 0.500 | 0.250 | 48.3 | 21.9 | 38.3 | 64.5 | 66.6 | 67.7 |
E015 | chr2 | 178430694 | 178430769 | TRUE | OK | 155.4 | 0.0171 | 0.3176 | 0.7967 | 0.212 | 0.106 | 159.7 | 84.5 | 129.9 | 188.6 | 175.3 | 194.3 |
E016 | chr2 | 178430769 | 178430824 | TRUE | OK | 243.8 | 0.0107 | 0.1538 | 0.7361 | 0.256 | 0.128 | 238.6 | 147.0 | 194.4 | 298.8 | 281.1 | 302.6 |
E017 | chr2 | 178430824 | 178430889 | TRUE | OK | 227.7 | 0.0171 | 0.1987 | 0.757 | 0.271 | 0.135 | 229.7 | 125.1 | 183.3 | 279.0 | 272.2 | 276.5 |
E018 | chr2 | 178431046 | 178431341 | FALSE | LOW_COUNTS_INDEP_FILTER | 7.3 | 0.0219 | 0.3108 | NA | NA | NA | 3.9 | 4.2 | 7.1 | 10.9 | 6.9 | 10.6 |
E019 | chr2 | 178432169 | 178432282 | TRUE | OK | 453.6 | 0.0043 | 1.856e-07 | 0.0002065 | -0.662 | -0.331 | 486.1 | 513.0 | 419.0 | 453.7 | 428.9 | 420.6 |
E020 | chr2 | 178433381 | 178433475 | TRUE | OK | 230.8 | 0.0177 | 0.03675 | 0.5819 | 0.469 | 0.235 | 210.0 | 115.7 | 180.3 | 291.9 | 300.6 | 286.2 |
E021 | chr2 | 178433475 | 178433515 | TRUE | OK | 156.9 | 0.0079 | 0.01397 | 0.4379 | 0.431 | 0.215 | 139.0 | 87.6 | 119.9 | 205.5 | 194.9 | 194.3 |
E022 | chr2 | 178433515 | 178434091 | TRUE | OK | 395.3 | 0.00697 | 0.2542 | 0.777 | 0.175 | 0.087 | 326.4 | 284.7 | 363.6 | 451.7 | 458.3 | 487.3 |
E023 | chr2 | 178438866 | 178440243 | TRUE | OK | 513.2 | 0.00834 | 0.9462 | 0.9872 | 0.006 | 0.003 | 433.8 | 516.1 | 385.8 | 570.9 | 572.9 | 599.4 |
J024 | chr2 | 178414113 | 178415817 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.0493 | 0.9809 | NA | NA | NA | 3.0 | 1.0 | 2.0 | 1.0 | 2.0 | 4.8 |
J025 | chr2 | 178414113 | 178418510 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.0817 | 0.1699 | NA | NA | NA | 2.0 | 0.0 | 0.0 | 3.0 | 3.9 | 1.0 |
J026 | chr2 | 178414113 | 178426365 | TRUE | OK | 211.8 | 0.00545 | 0.003321 | 0.2451 | 0.440 | 0.220 | 184.4 | 127.2 | 157.1 | 263.1 | 248.7 | 290.1 |
J027 | chr2 | 178414113 | 178430694 | TRUE | OK | 16.3 | 0.019 | 0.7719 | 0.9418 | 0.109 | 0.055 | 8.9 | 18.8 | 13.1 | 23.8 | 17.6 | 15.5 |
J028 | chr2 | 178415963 | 178430655 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.55 | 0.4442 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
J029 | chr2 | 178426505 | 178430677 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.5 | 0.0119 | 0.007062 | NA | NA | NA | 5.9 | 2.1 | 6.0 | 16.9 | 12.7 | 13.5 |
J030 | chr2 | 178426505 | 178430769 | TRUE | OK | 30.9 | 0.0067 | 0.6336 | 0.8989 | 0.122 | 0.061 | 31.6 | 21.9 | 23.2 | 31.8 | 31.3 | 45.4 |
J031 | chr2 | 178426661 | 178430769 | TRUE | OK | 24.3 | 0.00488 | 0.2401 | 0.7723 | 0.320 | 0.160 | 18.7 | 18.8 | 18.1 | 31.8 | 26.4 | 31.9 |
J032 | chr2 | 178426703 | 178430769 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.1 | 0.0378 | 0.004808 | NA | NA | NA | 1.0 | 0.0 | 1.0 | 6.0 | 2.9 | 7.7 |
J033 | chr2 | 178430889 | 178431046 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.087 | 0.2026 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 2.0 | 1.0 | 1.9 |
J034 | chr2 | 178430889 | 178432169 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.6 | 0.0177 | 0.6318 | NA | NA | NA | 4.9 | 3.1 | 5.0 | 6.9 | 4.9 | 8.7 |
J035 | chr2 | 178430889 | 178433381 | TRUE | OK | 150.3 | 0.0125 | 0.09338 | 0.6919 | 0.339 | 0.169 | 141.0 | 81.3 | 121.9 | 186.6 | 190.0 | 180.8 |
J036 | chr2 | 178433475 | 178438866 | TRUE | OK | 15.7 | 0.033 | 0.01069 | 0.4012 | 1.167 | 0.583 | 10.8 | 5.2 | 8.1 | 13.9 | 24.5 | 31.9 |
N037 | chr2 | 178426505 | 178430694 | TRUE | OK | 31.8 | 0.00503 | 0.808 | 0.9521 | 0.060 | 0.030 | 23.7 | 24.0 | 33.2 | 36.7 | 34.3 | 38.7 |
N038 | chr2 | 178426661 | 178430694 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.8 | 0.0721 | 0.4551 | NA | NA | NA | 10.8 | 3.1 | 13.1 | 12.9 | 6.9 | 5.8 |
N039 | chr2 | 178426680 | 178430694 | TRUE | OK | 19.0 | 0.00608 | 0.014 | 0.4379 | 0.773 | 0.387 | 11.8 | 11.5 | 12.1 | 26.8 | 22.5 | 29.0 |
N040 | chr2 | 178426680 | 178430769 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.6 | 0.0371 | 0.7574 | NA | NA | NA | 7.9 | 7.3 | 8.1 | 17.9 | 10.8 | 5.8 |
N041 | chr2 | 178432254 | 178436144 | TRUE | OK | 289.3 | 0.00187 | 1.209e-09 | 2.515e-06 | -0.633 | -0.317 | 308.6 | 324.3 | 282.0 | 288.9 | 258.5 | 273.6 |
N042 | chr2 | 178436319 | 178441609 | TRUE | OK | 310.0 | 0.00922 | 4.623e-06 | 0.002973 | -0.808 | -0.404 | 350.0 | 381.6 | 293.1 | 320.7 | 260.5 | 254.3 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000223960.6 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |