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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr1 | 11736083 | 11736116 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.5 | 0.0216 | 0.3502 | NA | NA | NA | 7.9 | 9.4 | 3.0 | 12.9 | 7.8 | 9.7 |
E002 | chr1 | 11736116 | 11736123 | TRUE | OK | 37.7 | 0.0261 | 0.6248 | 0.8961 | 0.179 | 0.090 | 30.6 | 42.8 | 27.2 | 59.6 | 32.3 | 33.8 |
E003 | chr1 | 11736123 | 11736129 | TRUE | OK | 44.8 | 0.015 | 0.5384 | 0.8683 | 0.175 | 0.087 | 37.5 | 48.0 | 34.2 | 65.5 | 40.2 | 43.5 |
E004 | chr1 | 11736129 | 11736135 | TRUE | OK | 90.0 | 0.00884 | 0.5457 | 0.8705 | 0.126 | 0.063 | 89.7 | 85.5 | 69.5 | 117.1 | 82.3 | 95.7 |
E005 | chr1 | 11736135 | 11736141 | TRUE | OK | 132.3 | 0.0075 | 0.6522 | 0.9051 | 0.087 | 0.043 | 125.2 | 129.3 | 110.8 | 169.8 | 125.3 | 133.4 |
E006 | chr1 | 11736141 | 11736146 | TRUE | OK | 152.4 | 0.00856 | 0.4769 | 0.8485 | 0.135 | 0.068 | 150.9 | 141.8 | 120.9 | 196.6 | 145.9 | 158.6 |
E007 | chr1 | 11736146 | 11736152 | TRUE | OK | 240.9 | 0.00823 | 0.6388 | 0.9006 | 0.081 | 0.040 | 249.5 | 227.3 | 190.4 | 293.9 | 248.7 | 235.9 |
E008 | chr1 | 11736152 | 11736172 | TRUE | OK | 393.3 | 0.00444 | 0.2965 | 0.7907 | 0.136 | 0.068 | 388.5 | 351.4 | 330.4 | 449.7 | 413.3 | 426.4 |
E009 | chr1 | 11736172 | 11736174 | TRUE | OK | 397.4 | 0.00443 | 0.3049 | 0.793 | 0.133 | 0.067 | 390.5 | 354.5 | 337.4 | 454.7 | 417.2 | 430.2 |
E010 | chr1 | 11736174 | 11736235 | TRUE | OK | 801.5 | 0.00442 | 0.2195 | 0.7647 | 0.153 | 0.077 | 757.3 | 721.6 | 703.0 | 901.5 | 830.4 | 895.3 |
E011 | chr1 | 11744532 | 11744568 | TRUE | OK | 12.3 | 0.0891 | 0.1661 | 0.7424 | 0.979 | 0.490 | 5.9 | 10.4 | 7.1 | 5.0 | 19.6 | 26.1 |
E012 | chr1 | 11745800 | 11745802 | TRUE | OK | 22.2 | 0.0163 | 0.1663 | 0.7425 | 0.467 | 0.234 | 15.8 | 20.9 | 16.1 | 27.8 | 34.3 | 18.4 |
E013 | chr1 | 11745802 | 11745837 | TRUE | OK | 924.9 | 0.00494 | 0.1195 | 0.7155 | 0.201 | 0.100 | 868.7 | 812.3 | 806.8 | 1035.5 | 984.2 | 1042.2 |
E014 | chr1 | 11745837 | 11745929 | TRUE | OK | 46.0 | 0.019 | 0.2783 | 0.7844 | 0.334 | 0.167 | 38.5 | 45.9 | 31.2 | 37.7 | 72.5 | 50.3 |
E015 | chr1 | 11745929 | 11745987 | TRUE | OK | 29.8 | 0.0244 | 0.5059 | 0.8578 | 0.260 | 0.130 | 24.7 | 28.2 | 24.2 | 20.8 | 48.0 | 32.9 |
E016 | chr1 | 11745987 | 11745997 | TRUE | OK | 34.9 | 0.00886 | 0.1781 | 0.7482 | 0.349 | 0.175 | 30.6 | 33.4 | 23.2 | 30.8 | 49.9 | 41.6 |
E017 | chr1 | 11745997 | 11746008 | TRUE | OK | 35.7 | 0.00741 | 0.1595 | 0.7387 | 0.351 | 0.175 | 30.6 | 33.4 | 25.2 | 32.8 | 50.9 | 41.6 |
E018 | chr1 | 11746008 | 11746126 | TRUE | OK | 48.2 | 0.0116 | 0.1072 | 0.7049 | 0.414 | 0.207 | 39.4 | 33.4 | 44.3 | 44.7 | 65.6 | 61.9 |
E019 | chr1 | 11746126 | 11746223 | TRUE | OK | 94.0 | 0.018 | 0.005343 | 0.3044 | 0.723 | 0.361 | 61.1 | 55.3 | 84.6 | 101.3 | 124.4 | 137.3 |
E020 | chr1 | 11746223 | 11746672 | TRUE | OK | 63.1 | 0.0621 | 0.15 | 0.7347 | 0.727 | 0.364 | 39.4 | 36.5 | 58.4 | 39.7 | 109.7 | 94.7 |
E021 | chr1 | 11747439 | 11747511 | TRUE | OK | 1192.7 | 0.00442 | 0.08325 | 0.6811 | 0.213 | 0.106 | 1101.4 | 1081.3 | 1032.4 | 1289.6 | 1236.8 | 1414.5 |
E022 | chr1 | 11747511 | 11747545 | TRUE | OK | 1250.1 | 0.00618 | 0.0961 | 0.695 | 0.240 | 0.120 | 1128.0 | 1110.5 | 1112.0 | 1296.6 | 1333.8 | 1519.9 |
E023 | chr1 | 11748414 | 11748589 | TRUE | OK | 1674.7 | 0.00401 | 0.2427 | 0.773 | 0.140 | 0.070 | 1560.9 | 1594.3 | 1476.6 | 1718.5 | 1748.0 | 1950.1 |
E024 | chr1 | 11748589 | 11748610 | TRUE | OK | 702.8 | 0.00108 | 0.4545 | 0.8409 | -0.053 | -0.026 | 685.3 | 722.6 | 625.5 | 697.9 | 723.7 | 761.9 |
E025 | chr1 | 11750076 | 11750125 | TRUE | OK | 1126.1 | 0.000874 | 0.2429 | 0.7731 | -0.075 | -0.038 | 1081.7 | 1205.4 | 983.0 | 1117.9 | 1143.8 | 1225.0 |
E026 | chr1 | 11750125 | 11750185 | TRUE | OK | 1230.7 | 0.00177 | 0.2367 | 0.7712 | -0.101 | -0.050 | 1161.5 | 1379.5 | 1052.5 | 1251.9 | 1257.4 | 1281.1 |
E027 | chr1 | 11750185 | 11750316 | TRUE | OK | 1499.2 | 0.00215 | 0.2729 | 0.783 | -0.100 | -0.050 | 1428.7 | 1656.9 | 1280.2 | 1542.8 | 1550.2 | 1536.3 |
E028 | chr1 | 11750316 | 11750326 | TRUE | OK | 955.4 | 0.000989 | 0.617 | 0.8935 | -0.036 | -0.018 | 905.2 | 1030.2 | 812.8 | 970.0 | 999.8 | 1014.2 |
E029 | chr1 | 11750326 | 11750409 | TRUE | OK | 1194.1 | 0.00259 | 0.5608 | 0.8751 | -0.062 | -0.031 | 1133.9 | 1332.6 | 988.1 | 1235.0 | 1228.0 | 1247.2 |
E030 | chr1 | 11750409 | 11750488 | TRUE | OK | 999.7 | 0.00263 | 0.3413 | 0.8044 | -0.097 | -0.048 | 998.8 | 1102.2 | 820.9 | 1017.6 | 1000.8 | 1057.7 |
E031 | chr1 | 11750488 | 11750578 | TRUE | OK | 734.2 | 0.00951 | 0.09848 | 0.6967 | -0.296 | -0.148 | 801.6 | 888.4 | 584.2 | 763.5 | 653.2 | 714.5 |
E032 | chr1 | 11750578 | 11750633 | TRUE | OK | 527.3 | 0.00665 | 0.02975 | 0.5512 | -0.326 | -0.163 | 571.9 | 636.1 | 448.2 | 545.0 | 447.5 | 515.3 |
E033 | chr1 | 11750633 | 11750710 | TRUE | OK | 415.9 | 0.00541 | 0.1071 | 0.7048 | -0.228 | -0.114 | 429.9 | 500.5 | 342.5 | 425.9 | 365.3 | 431.2 |
E034 | chr1 | 11750710 | 11750769 | TRUE | OK | 143.4 | 0.00775 | 0.0363 | 0.58 | -0.371 | -0.185 | 164.7 | 170.0 | 126.9 | 149.9 | 107.7 | 141.2 |
E035 | chr1 | 11750769 | 11750771 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.8 | 0.0292 | 0.5001 | NA | NA | NA | 3.9 | 4.2 | 6.0 | 9.9 | 4.9 | 5.8 |
E036 | chr1 | 11754424 | 11754802 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.7 | 0.0526 | 0.925 | NA | NA | NA | 8.9 | 13.6 | 3.0 | 10.9 | 4.9 | 10.6 |
J037 | chr1 | 11736235 | 11744532 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.071 | 0.8633 | NA | NA | NA | 0.0 | 2.1 | 2.0 | 1.0 | 1.0 | 1.9 |
J038 | chr1 | 11736235 | 11745802 | TRUE | OK | 787.5 | 0.00376 | 0.1866 | 0.7515 | 0.154 | 0.077 | 739.5 | 712.2 | 691.0 | 885.6 | 816.7 | 879.8 |
J039 | chr1 | 11736235 | 11747439 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.8 | 0.139 | 0.7095 | NA | NA | NA | 6.9 | 1.0 | 4.0 | 2.0 | 6.9 | 1.9 |
J040 | chr1 | 11744568 | 11745802 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.0748 | 0.8805 | NA | NA | NA | 1.0 | 3.1 | 3.0 | 1.0 | 2.0 | 5.8 |
J041 | chr1 | 11745837 | 11745929 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.0776 | 0.8814 | NA | NA | NA | 1.0 | 3.1 | 0.0 | 1.0 | 2.0 | 1.0 |
J042 | chr1 | 11745837 | 11745987 | TRUE | OK | 10.0 | 0.0118 | 0.9944 | 0.9986 | 0.000 | 0.000 | 7.9 | 10.4 | 10.1 | 13.9 | 7.8 | 9.7 |
J043 | chr1 | 11745837 | 11746126 | TRUE | OK | 28.4 | 0.00984 | 0.01743 | 0.4714 | 0.677 | 0.338 | 21.7 | 17.7 | 22.2 | 43.7 | 28.4 | 36.7 |
J044 | chr1 | 11745837 | 11747439 | TRUE | OK | 816.8 | 0.00487 | 0.1625 | 0.7404 | 0.181 | 0.090 | 778.0 | 717.4 | 710.1 | 908.4 | 847.1 | 939.8 |
J045 | chr1 | 11745837 | 11748414 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.331 | 0.593 | NA | NA | NA | 2.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
J046 | chr1 | 11746223 | 11747439 | TRUE | OK | 46.9 | 0.00777 | 1.42e-05 | 0.007304 | 1.029 | 0.515 | 30.6 | 25.0 | 31.2 | 52.6 | 63.7 | 78.3 |
J047 | chr1 | 11747545 | 11748414 | TRUE | OK | 1020.0 | 0.00567 | 0.03233 | 0.5626 | 0.295 | 0.148 | 903.2 | 886.3 | 886.4 | 1060.3 | 1106.6 | 1277.2 |
J048 | chr1 | 11748589 | 11750076 | TRUE | OK | 188.6 | 0.00145 | 0.1944 | 0.7559 | 0.142 | 0.071 | 181.4 | 182.5 | 147.1 | 202.5 | 200.8 | 217.5 |
J049 | chr1 | 11748610 | 11750076 | TRUE | OK | 673.7 | 0.000648 | 0.4033 | 0.825 | -0.053 | -0.027 | 653.7 | 697.6 | 598.3 | 671.1 | 693.3 | 728.0 |
J050 | chr1 | 11750185 | 11754424 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
N051 | chr1 | 11747545 | 11750076 | FALSE | LOW_COUNTS_INDEP_FILTER | 8.1 | 0.0124 | 0.8182 | NA | NA | NA | 6.9 | 10.4 | 5.0 | 8.9 | 7.8 | 9.7 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000177674.16 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |