| << | < Prev Gene | TOP | Next Gene > | >> | |
| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
| MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
| E001 | chr3 | 43354858 | 43355056 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.265 | 0.05067 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 3.0 | 2.0 | 0.0 |
| E002 | chr3 | 43365836 | 43365847 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.1 | 0.9051 | NA | NA | NA | 1.0 | 1.0 | 3.0 | 2.0 | 0.0 | 2.9 |
| E003 | chr3 | 43365847 | 43366208 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.0 | 0.0259 | 0.3327 | NA | NA | NA | 3.9 | 5.2 | 5.0 | 9.9 | 4.9 | 6.8 |
| E004 | chr3 | 43366208 | 43366347 | TRUE | OK | 10.9 | 0.0374 | 0.04414 | 0.6075 | 0.998 | 0.499 | 10.8 | 6.3 | 4.0 | 20.8 | 9.8 | 13.5 |
| E005 | chr3 | 43366347 | 43366358 | TRUE | OK | 15.2 | 0.0128 | 0.01683 | 0.4664 | 0.874 | 0.437 | 12.8 | 11.5 | 7.1 | 22.8 | 14.7 | 22.2 |
| E006 | chr3 | 43366358 | 43366555 | TRUE | OK | 191.8 | 0.00482 | 0.7648 | 0.9397 | 0.044 | 0.022 | 182.4 | 208.5 | 164.2 | 202.5 | 177.2 | 215.6 |
| E007 | chr3 | 43366555 | 43366642 | TRUE | OK | 225.8 | 0.00679 | 0.8989 | 0.9758 | 0.026 | 0.013 | 201.1 | 244.0 | 212.5 | 231.3 | 198.8 | 266.8 |
| E008 | chr3 | 43366642 | 43366888 | TRUE | OK | 413.9 | 0.0052 | 0.06398 | 0.6535 | -0.252 | -0.126 | 415.1 | 484.9 | 405.9 | 372.3 | 380.9 | 424.4 |
| E009 | chr3 | 43366888 | 43366974 | TRUE | OK | 353.2 | 0.00657 | 0.3795 | 0.8167 | -0.127 | -0.064 | 347.1 | 386.8 | 343.5 | 295.9 | 355.5 | 390.6 |
| E010 | chr3 | 43372727 | 43372847 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.217 | 0.3437 | NA | NA | NA | 2.0 | 0.0 | 1.0 | 0.0 | 0.0 | 1.0 |
| E011 | chr3 | 43432610 | 43432727 | TRUE | OK | 361.4 | 0.0076 | 0.8197 | 0.955 | 0.045 | 0.023 | 339.2 | 339.9 | 367.6 | 308.8 | 384.9 | 428.3 |
| E012 | chr3 | 43549719 | 43549848 | TRUE | OK | 399.7 | 0.00344 | 0.6739 | 0.9115 | 0.052 | 0.026 | 392.4 | 371.2 | 391.8 | 364.4 | 425.0 | 453.4 |
| E013 | chr3 | 43551471 | 43551588 | TRUE | OK | 14.1 | 0.0118 | 0.4516 | 0.8399 | 0.270 | 0.135 | 14.8 | 9.4 | 13.1 | 16.9 | 16.6 | 13.5 |
| E014 | chr3 | 43555277 | 43555411 | TRUE | OK | 427.5 | 0.0019 | 0.8404 | 0.9608 | -0.021 | -0.010 | 454.5 | 420.2 | 387.8 | 414.0 | 433.8 | 454.4 |
| E015 | chr3 | 43555411 | 43555469 | TRUE | OK | 351.0 | 0.0023 | 0.6034 | 0.8889 | -0.058 | -0.029 | 395.4 | 325.3 | 327.3 | 348.5 | 343.7 | 365.5 |
| E016 | chr3 | 43561219 | 43561372 | TRUE | OK | 433.1 | 0.00229 | 0.7803 | 0.9446 | -0.030 | -0.015 | 472.3 | 422.3 | 387.8 | 429.9 | 417.2 | 468.9 |
| E017 | chr3 | 43561372 | 43561402 | TRUE | OK | 267.4 | 0.00295 | 0.8118 | 0.9531 | 0.024 | 0.012 | 296.8 | 250.3 | 231.7 | 281.0 | 260.5 | 284.2 |
| E018 | chr3 | 43565652 | 43565727 | TRUE | OK | 315.5 | 0.0021 | 0.7302 | 0.9295 | 0.034 | 0.017 | 340.2 | 290.9 | 285.0 | 334.6 | 307.5 | 334.5 |
| E019 | chr3 | 43574808 | 43574864 | TRUE | OK | 283.2 | 0.00298 | 0.6941 | 0.9181 | -0.050 | -0.025 | 319.5 | 258.6 | 265.9 | 299.8 | 267.3 | 288.1 |
| E020 | chr3 | 43576691 | 43577034 | TRUE | OK | 545.8 | 0.0038 | 0.1733 | 0.7455 | 0.154 | 0.077 | 574.8 | 445.2 | 513.7 | 571.8 | 570.9 | 598.5 |
| E021 | chr3 | 43577034 | 43577261 | TRUE | OK | 371.4 | 0.00407 | 0.3436 | 0.805 | 0.120 | 0.060 | 382.6 | 310.7 | 357.6 | 374.3 | 358.4 | 444.7 |
| E022 | chr3 | 43580352 | 43580472 | TRUE | OK | 280.5 | 0.00927 | 0.7588 | 0.9381 | 0.054 | 0.027 | 317.5 | 244.0 | 247.8 | 308.8 | 241.9 | 322.9 |
| E023 | chr3 | 43598531 | 43598564 | TRUE | OK | 246.2 | 0.00974 | 0.5965 | 0.8868 | 0.097 | 0.048 | 277.1 | 211.7 | 211.5 | 292.9 | 210.5 | 273.6 |
| E024 | chr3 | 43598564 | 43598580 | TRUE | OK | 240.7 | 0.00962 | 0.858 | 0.9653 | 0.035 | 0.018 | 271.2 | 217.9 | 209.5 | 286.9 | 201.7 | 257.2 |
| E025 | chr3 | 43598580 | 43598581 | TRUE | OK | 228.8 | 0.0102 | 0.9609 | 0.991 | 0.011 | 0.005 | 262.3 | 207.5 | 199.4 | 273.0 | 191.0 | 239.8 |
| E026 | chr3 | 43598581 | 43598601 | TRUE | OK | 254.0 | 0.00965 | 0.9341 | 0.9844 | -0.014 | -0.007 | 292.8 | 232.5 | 223.6 | 298.8 | 213.5 | 263.0 |
| E027 | chr3 | 43598601 | 43598666 | TRUE | OK | 287.1 | 0.0136 | 0.7677 | 0.9406 | -0.049 | -0.024 | 321.4 | 272.1 | 261.9 | 355.4 | 228.2 | 283.3 |
| E028 | chr3 | 43600383 | 43600581 | TRUE | OK | 391.3 | 0.0102 | 0.5608 | 0.8751 | -0.105 | -0.052 | 458.5 | 344.1 | 381.7 | 440.8 | 321.2 | 401.2 |
| E029 | chr3 | 43605713 | 43605736 | TRUE | OK | 213.9 | 0.00458 | 0.755 | 0.9368 | -0.045 | -0.023 | 232.7 | 181.4 | 222.6 | 227.3 | 188.0 | 231.1 |
| E030 | chr3 | 43605736 | 43605863 | TRUE | OK | 251.3 | 0.00228 | 0.974 | 0.9937 | 0.002 | 0.001 | 267.2 | 220.0 | 249.8 | 266.1 | 240.9 | 263.9 |
| E031 | chr3 | 43618019 | 43618086 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.857 | 0.6275 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| E032 | chr3 | 43621772 | 43621897 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.398 | 0.4232 | NA | NA | NA | 3.9 | 0.0 | 1.0 | 2.0 | 0.0 | 0.0 |
| E033 | chr3 | 43621908 | 43621952 | TRUE | OK | 124.7 | 0.00281 | 0.5727 | 0.8791 | 0.077 | 0.039 | 134.1 | 108.4 | 113.8 | 137.0 | 119.5 | 135.4 |
| E034 | chr3 | 43621952 | 43621965 | TRUE | OK | 85.4 | 0.00323 | 0.2632 | 0.7801 | 0.179 | 0.090 | 84.8 | 68.8 | 81.6 | 94.3 | 83.2 | 99.6 |
| E035 | chr3 | 43621965 | 43621984 | TRUE | OK | 56.1 | 0.00387 | 0.1382 | 0.7287 | 0.283 | 0.142 | 49.3 | 50.1 | 49.4 | 60.6 | 56.8 | 70.6 |
| E036 | chr3 | 43621984 | 43622003 | TRUE | OK | 25.6 | 0.0131 | 0.7904 | 0.9472 | -0.073 | -0.037 | 19.7 | 30.2 | 27.2 | 19.9 | 23.5 | 32.9 |
| E037 | chr3 | 43622003 | 43622011 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.2 | 0.0887 | 0.3968 | NA | NA | NA | 3.9 | 9.4 | 2.0 | 2.0 | 4.9 | 2.9 |
| E038 | chr3 | 43622011 | 43622066 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.0 | 0.184 | 0.7811 | NA | NA | NA | 3.0 | 7.3 | 0.0 | 2.0 | 3.9 | 1.9 |
| E039 | chr3 | 43622066 | 43622068 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E040 | chr3 | 43636308 | 43636538 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.125 | 0.5068 | NA | NA | NA | 1.0 | 0.0 | 1.0 | 2.0 | 1.0 | 1.0 |
| E041 | chr3 | 43637602 | 43637783 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.068 | 0.8791 | NA | NA | NA | 3.9 | 1.0 | 1.0 | 3.0 | 2.0 | 1.9 |
| E042 | chr3 | 43638674 | 43638894 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.398 | 0.9615 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| E043 | chr3 | 43638894 | 43639083 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.398 | 0.9615 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| E044 | chr3 | 43652946 | 43653037 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.137 | 0.6225 | NA | NA | NA | 0.0 | 1.0 | 2.0 | 0.0 | 2.0 | 2.9 |
| E045 | chr3 | 43653037 | 43653040 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.243 | 0.9146 | NA | NA | NA | 0.0 | 1.0 | 1.0 | 0.0 | 2.0 | 0.0 |
| E046 | chr3 | 43689310 | 43689476 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.0 | 0.123 | 0.7493 | NA | NA | NA | 3.9 | 3.1 | 3.0 | 0.0 | 6.9 | 6.8 |
| E047 | chr3 | 43690540 | 43690614 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.1 | 0.0731 | 0.007759 | NA | NA | NA | 1.0 | 4.2 | 2.0 | 6.0 | 6.9 | 16.4 |
| E048 | chr3 | 43690614 | 43690813 | TRUE | OK | 17.9 | 0.0246 | 0.1234 | 0.719 | 0.604 | 0.302 | 9.9 | 17.7 | 14.1 | 29.8 | 18.6 | 17.4 |
| E049 | chr3 | 43690813 | 43690819 | TRUE | OK | 13.4 | 0.158 | 0.6634 | 0.9086 | -0.183 | -0.091 | 9.9 | 21.9 | 10.1 | 23.8 | 11.8 | 2.9 |
| E050 | chr3 | 43691516 | 43691569 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.281 | 0.7227 | NA | NA | NA | 0.0 | 1.0 | 2.0 | 0.0 | 3.9 | 1.0 |
| E051 | chr3 | 43691569 | 43691572 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E052 | chr3 | 43691572 | 43691594 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J053 | chr3 | 43355056 | 43365836 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J054 | chr3 | 43366974 | 43372727 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.55 | 0.5286 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J055 | chr3 | 43366974 | 43432610 | TRUE | OK | 208.1 | 0.00574 | 0.6521 | 0.9051 | 0.076 | 0.038 | 189.3 | 205.4 | 201.4 | 180.7 | 220.3 | 251.4 |
| J056 | chr3 | 43372847 | 43549719 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J057 | chr3 | 43432727 | 43549719 | TRUE | OK | 238.6 | 0.00633 | 0.6509 | 0.9048 | 0.077 | 0.038 | 220.9 | 215.8 | 246.8 | 208.5 | 250.7 | 289.1 |
| J058 | chr3 | 43549848 | 43551471 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.3 | 0.0109 | 0.8145 | NA | NA | NA | 8.9 | 9.4 | 8.1 | 8.9 | 11.8 | 8.7 |
| J059 | chr3 | 43549848 | 43555277 | TRUE | OK | 225.3 | 0.00166 | 0.8444 | 0.9616 | 0.021 | 0.011 | 231.7 | 214.8 | 210.5 | 207.5 | 236.0 | 251.4 |
| J060 | chr3 | 43551588 | 43555277 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.8 | 0.0189 | 0.2324 | NA | NA | NA | 5.9 | 3.1 | 4.0 | 9.9 | 5.9 | 5.8 |
| J061 | chr3 | 43555469 | 43561219 | TRUE | OK | 276.8 | 0.00117 | 0.5637 | 0.8761 | -0.055 | -0.028 | 300.7 | 268.0 | 257.8 | 269.0 | 268.3 | 296.8 |
| J062 | chr3 | 43561402 | 43565652 | TRUE | OK | 222.3 | 0.00209 | 0.9288 | 0.9832 | -0.012 | -0.006 | 243.5 | 216.9 | 194.4 | 235.3 | 207.6 | 235.9 |
| J063 | chr3 | 43565727 | 43574808 | TRUE | OK | 237.9 | 0.00191 | 0.903 | 0.9768 | -0.016 | -0.008 | 266.2 | 210.6 | 224.6 | 247.2 | 229.2 | 249.4 |
| J064 | chr3 | 43565727 | 43598531 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.044 | 0.2722 | NA | NA | NA | 3.9 | 4.2 | 1.0 | 2.0 | 2.0 | 1.0 |
| J065 | chr3 | 43574864 | 43576691 | TRUE | OK | 213.0 | 0.00233 | 0.7779 | 0.9439 | 0.031 | 0.015 | 235.7 | 188.7 | 194.4 | 231.3 | 200.8 | 227.2 |
| J066 | chr3 | 43574864 | 43580352 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.0849 | 0.9327 | NA | NA | NA | 2.0 | 0.0 | 2.0 | 2.0 | 2.0 | 0.0 |
| J067 | chr3 | 43577261 | 43580352 | TRUE | OK | 149.1 | 0.00449 | 0.6773 | 0.9128 | 0.066 | 0.033 | 160.7 | 134.5 | 133.0 | 142.0 | 137.1 | 187.6 |
| J068 | chr3 | 43580472 | 43598531 | TRUE | OK | 198.3 | 0.00942 | 0.5441 | 0.87 | 0.111 | 0.056 | 223.8 | 167.9 | 169.2 | 236.3 | 169.4 | 223.3 |
| J069 | chr3 | 43580472 | 43605713 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J070 | chr3 | 43598666 | 43600383 | TRUE | OK | 211.5 | 0.0124 | 0.7319 | 0.93 | -0.060 | -0.030 | 241.6 | 191.9 | 199.4 | 257.1 | 164.5 | 214.6 |
| J071 | chr3 | 43598666 | 43605713 | TRUE | OK | 12.2 | 0.0138 | 0.3211 | 0.7984 | -0.388 | -0.194 | 9.9 | 14.6 | 16.1 | 14.9 | 8.8 | 8.7 |
| J072 | chr3 | 43600581 | 43605713 | TRUE | OK | 180.1 | 0.00408 | 0.4817 | 0.8499 | -0.100 | -0.050 | 208.0 | 155.4 | 182.3 | 183.7 | 154.7 | 196.3 |
| J073 | chr3 | 43605863 | 43618019 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.56 | 0.5914 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| J074 | chr3 | 43605863 | 43621772 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.386 | 0.419 | NA | NA | NA | 3.9 | 0.0 | 1.0 | 2.0 | 0.0 | 0.0 |
| J075 | chr3 | 43605863 | 43621908 | TRUE | OK | 124.0 | 0.00203 | 0.5073 | 0.8583 | 0.086 | 0.043 | 133.1 | 107.4 | 112.8 | 137.0 | 118.5 | 135.4 |
| J076 | chr3 | 43605863 | 43652946 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.266 | 0.9554 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 1.0 |
| J077 | chr3 | 43605863 | 43691516 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.56 | 0.5914 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| J078 | chr3 | 43618086 | 43621908 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J079 | chr3 | 43636538 | 43637602 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.265 | 0.2606 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 0.0 |
| J080 | chr3 | 43637783 | 43638674 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.558 | 0.5329 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J081 | chr3 | 43639083 | 43689310 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J082 | chr3 | 43653037 | 43690540 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.565 | 0.5959 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| J083 | chr3 | 43653040 | 43690614 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J084 | chr3 | 43653040 | 43691516 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.167 | 0.9271 | NA | NA | NA | 0.0 | 1.0 | 1.0 | 0.0 | 2.0 | 0.0 |
| J085 | chr3 | 43689476 | 43691516 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.261 | 0.2623 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 |
| N086 | chr3 | 43691039 | 43699275 | TRUE | OK | 353.5 | 0.00747 | 1.874e-11 | 6.404e-08 | 1.079 | 0.540 | 264.3 | 195.0 | 249.8 | 417.0 | 454.4 | 540.5 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000160746.12 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |