Raw Counts Table (ENSG00000160746.12)
| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC
(yes/no) | log2FCvst
(yes/no) | Raw Counts |
| MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 |
| E001 | chr3 | 43354858 | 43355056 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.265 | 0.05067 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 3.0 | 2.0 | 0.0 |
| E002 | chr3 | 43365836 | 43365847 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.1 | 0.9051 | NA | NA | NA | 1.0 | 1.0 | 3.0 | 2.0 | 0.0 | 3.0 |
| E003 | chr3 | 43365847 | 43366208 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.0 | 0.0259 | 0.3327 | NA | NA | NA | 4.0 | 5.0 | 5.0 | 10.0 | 5.0 | 7.0 |
| E004 | chr3 | 43366208 | 43366347 | TRUE | OK | 10.9 | 0.0374 | 0.04414 | 0.6075 | 0.998 | 0.499 | 11.0 | 6.0 | 4.0 | 21.0 | 10.0 | 14.0 |
| E005 | chr3 | 43366347 | 43366358 | TRUE | OK | 15.2 | 0.0128 | 0.01683 | 0.4664 | 0.874 | 0.437 | 13.0 | 11.0 | 7.0 | 23.0 | 15.0 | 23.0 |
| E006 | chr3 | 43366358 | 43366555 | TRUE | OK | 191.8 | 0.00482 | 0.7648 | 0.9397 | 0.044 | 0.022 | 185.0 | 200.0 | 163.0 | 204.0 | 181.0 | 223.0 |
| E007 | chr3 | 43366555 | 43366642 | TRUE | OK | 225.8 | 0.00679 | 0.8989 | 0.9758 | 0.026 | 0.013 | 204.0 | 234.0 | 211.0 | 233.0 | 203.0 | 276.0 |
| E008 | chr3 | 43366642 | 43366888 | TRUE | OK | 413.9 | 0.0052 | 0.06398 | 0.6535 | -0.252 | -0.126 | 421.0 | 465.0 | 403.0 | 375.0 | 389.0 | 439.0 |
| E009 | chr3 | 43366888 | 43366974 | TRUE | OK | 353.2 | 0.00657 | 0.3795 | 0.8167 | -0.127 | -0.064 | 352.0 | 371.0 | 341.0 | 298.0 | 363.0 | 404.0 |
| E010 | chr3 | 43372727 | 43372847 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.217 | 0.3437 | NA | NA | NA | 2.0 | 0.0 | 1.0 | 0.0 | 0.0 | 1.0 |
| E011 | chr3 | 43432610 | 43432727 | TRUE | OK | 361.4 | 0.0076 | 0.8197 | 0.955 | 0.045 | 0.023 | 344.0 | 326.0 | 365.0 | 311.0 | 393.0 | 443.0 |
| E012 | chr3 | 43549719 | 43549848 | TRUE | OK | 399.7 | 0.00344 | 0.6739 | 0.9115 | 0.052 | 0.026 | 398.0 | 356.0 | 389.0 | 367.0 | 434.0 | 469.0 |
| E013 | chr3 | 43551471 | 43551588 | TRUE | OK | 14.1 | 0.0118 | 0.4516 | 0.8399 | 0.270 | 0.135 | 15.0 | 9.0 | 13.0 | 17.0 | 17.0 | 14.0 |
| E014 | chr3 | 43555277 | 43555411 | TRUE | OK | 427.5 | 0.0019 | 0.8404 | 0.9608 | -0.021 | -0.010 | 461.0 | 403.0 | 385.0 | 417.0 | 443.0 | 470.0 |
| E015 | chr3 | 43555411 | 43555469 | TRUE | OK | 351.0 | 0.0023 | 0.6034 | 0.8889 | -0.058 | -0.029 | 401.0 | 312.0 | 325.0 | 351.0 | 351.0 | 378.0 |
| E016 | chr3 | 43561219 | 43561372 | TRUE | OK | 433.1 | 0.00229 | 0.7803 | 0.9446 | -0.030 | -0.015 | 479.0 | 405.0 | 385.0 | 433.0 | 426.0 | 485.0 |
| E017 | chr3 | 43561372 | 43561402 | TRUE | OK | 267.4 | 0.00295 | 0.8118 | 0.9531 | 0.024 | 0.012 | 301.0 | 240.0 | 230.0 | 283.0 | 266.0 | 294.0 |
| E018 | chr3 | 43565652 | 43565727 | TRUE | OK | 315.5 | 0.0021 | 0.7302 | 0.9295 | 0.034 | 0.017 | 345.0 | 279.0 | 283.0 | 337.0 | 314.0 | 346.0 |
| E019 | chr3 | 43574808 | 43574864 | TRUE | OK | 283.2 | 0.00298 | 0.6941 | 0.9181 | -0.050 | -0.025 | 324.0 | 248.0 | 264.0 | 302.0 | 273.0 | 298.0 |
| E020 | chr3 | 43576691 | 43577034 | TRUE | OK | 545.8 | 0.0038 | 0.1733 | 0.7455 | 0.154 | 0.077 | 583.0 | 427.0 | 510.0 | 576.0 | 583.0 | 619.0 |
| E021 | chr3 | 43577034 | 43577261 | TRUE | OK | 371.4 | 0.00407 | 0.3436 | 0.805 | 0.120 | 0.060 | 388.0 | 298.0 | 355.0 | 377.0 | 366.0 | 460.0 |
| E022 | chr3 | 43580352 | 43580472 | TRUE | OK | 280.5 | 0.00927 | 0.7588 | 0.9381 | 0.054 | 0.027 | 322.0 | 234.0 | 246.0 | 311.0 | 247.0 | 334.0 |
| E023 | chr3 | 43598531 | 43598564 | TRUE | OK | 246.2 | 0.00974 | 0.5965 | 0.8868 | 0.097 | 0.048 | 281.0 | 203.0 | 210.0 | 295.0 | 215.0 | 283.0 |
| E024 | chr3 | 43598564 | 43598580 | TRUE | OK | 240.7 | 0.00962 | 0.858 | 0.9653 | 0.035 | 0.018 | 275.0 | 209.0 | 208.0 | 289.0 | 206.0 | 266.0 |
| E025 | chr3 | 43598580 | 43598581 | TRUE | OK | 228.8 | 0.0102 | 0.9609 | 0.991 | 0.011 | 0.005 | 266.0 | 199.0 | 198.0 | 275.0 | 195.0 | 248.0 |
| E026 | chr3 | 43598581 | 43598601 | TRUE | OK | 254.0 | 0.00965 | 0.9341 | 0.9844 | -0.014 | -0.007 | 297.0 | 223.0 | 222.0 | 301.0 | 218.0 | 272.0 |
| E027 | chr3 | 43598601 | 43598666 | TRUE | OK | 287.1 | 0.0136 | 0.7677 | 0.9406 | -0.049 | -0.024 | 326.0 | 261.0 | 260.0 | 358.0 | 233.0 | 293.0 |
| E028 | chr3 | 43600383 | 43600581 | TRUE | OK | 391.3 | 0.0102 | 0.5608 | 0.8751 | -0.105 | -0.052 | 465.0 | 330.0 | 379.0 | 444.0 | 328.0 | 415.0 |
| E029 | chr3 | 43605713 | 43605736 | TRUE | OK | 213.9 | 0.00458 | 0.755 | 0.9368 | -0.045 | -0.023 | 236.0 | 174.0 | 221.0 | 229.0 | 192.0 | 239.0 |
| E030 | chr3 | 43605736 | 43605863 | TRUE | OK | 251.3 | 0.00228 | 0.974 | 0.9937 | 0.002 | 0.001 | 271.0 | 211.0 | 248.0 | 268.0 | 246.0 | 273.0 |
| E031 | chr3 | 43618019 | 43618086 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.857 | 0.6275 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| E032 | chr3 | 43621772 | 43621897 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.398 | 0.4232 | NA | NA | NA | 4.0 | 0.0 | 1.0 | 2.0 | 0.0 | 0.0 |
| E033 | chr3 | 43621908 | 43621952 | TRUE | OK | 124.7 | 0.00281 | 0.5727 | 0.8791 | 0.077 | 0.039 | 136.0 | 104.0 | 113.0 | 138.0 | 122.0 | 140.0 |
| E034 | chr3 | 43621952 | 43621965 | TRUE | OK | 85.4 | 0.00323 | 0.2632 | 0.7801 | 0.179 | 0.090 | 86.0 | 66.0 | 81.0 | 95.0 | 85.0 | 103.0 |
| E035 | chr3 | 43621965 | 43621984 | TRUE | OK | 56.1 | 0.00387 | 0.1382 | 0.7287 | 0.283 | 0.142 | 50.0 | 48.0 | 49.0 | 61.0 | 58.0 | 73.0 |
| E036 | chr3 | 43621984 | 43622003 | TRUE | OK | 25.6 | 0.0131 | 0.7904 | 0.9472 | -0.073 | -0.037 | 20.0 | 29.0 | 27.0 | 20.0 | 24.0 | 34.0 |
| E037 | chr3 | 43622003 | 43622011 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.2 | 0.0887 | 0.3968 | NA | NA | NA | 4.0 | 9.0 | 2.0 | 2.0 | 5.0 | 3.0 |
| E038 | chr3 | 43622011 | 43622066 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.0 | 0.184 | 0.7811 | NA | NA | NA | 3.0 | 7.0 | 0.0 | 2.0 | 4.0 | 2.0 |
| E039 | chr3 | 43622066 | 43622068 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E040 | chr3 | 43636308 | 43636538 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.125 | 0.5068 | NA | NA | NA | 1.0 | 0.0 | 1.0 | 2.0 | 1.0 | 1.0 |
| E041 | chr3 | 43637602 | 43637783 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.068 | 0.8791 | NA | NA | NA | 4.0 | 1.0 | 1.0 | 3.0 | 2.0 | 2.0 |
| E042 | chr3 | 43638674 | 43638894 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.398 | 0.9615 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| E043 | chr3 | 43638894 | 43639083 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.398 | 0.9615 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| E044 | chr3 | 43652946 | 43653037 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.137 | 0.6225 | NA | NA | NA | 0.0 | 1.0 | 2.0 | 0.0 | 2.0 | 3.0 |
| E045 | chr3 | 43653037 | 43653040 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.243 | 0.9146 | NA | NA | NA | 0.0 | 1.0 | 1.0 | 0.0 | 2.0 | 0.0 |
| E046 | chr3 | 43689310 | 43689476 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.0 | 0.123 | 0.7493 | NA | NA | NA | 4.0 | 3.0 | 3.0 | 0.0 | 7.0 | 7.0 |
| E047 | chr3 | 43690540 | 43690614 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.1 | 0.0731 | 0.007759 | NA | NA | NA | 1.0 | 4.0 | 2.0 | 6.0 | 7.0 | 17.0 |
| E048 | chr3 | 43690614 | 43690813 | TRUE | OK | 17.9 | 0.0246 | 0.1234 | 0.719 | 0.604 | 0.302 | 10.0 | 17.0 | 14.0 | 30.0 | 19.0 | 18.0 |
| E049 | chr3 | 43690813 | 43690819 | TRUE | OK | 13.4 | 0.158 | 0.6634 | 0.9086 | -0.183 | -0.091 | 10.0 | 21.0 | 10.0 | 24.0 | 12.0 | 3.0 |
| E050 | chr3 | 43691516 | 43691569 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.281 | 0.7227 | NA | NA | NA | 0.0 | 1.0 | 2.0 | 0.0 | 4.0 | 1.0 |
| E051 | chr3 | 43691569 | 43691572 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E052 | chr3 | 43691572 | 43691594 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J053 | chr3 | 43355056 | 43365836 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J054 | chr3 | 43366974 | 43372727 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.55 | 0.5286 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 |
| J055 | chr3 | 43366974 | 43432610 | TRUE | OK | 208.1 | 0.00574 | 0.6521 | 0.9051 | 0.076 | 0.038 | 192.0 | 197.0 | 200.0 | 182.0 | 225.0 | 260.0 |
| J056 | chr3 | 43372847 | 43549719 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J057 | chr3 | 43432727 | 43549719 | TRUE | OK | 238.6 | 0.00633 | 0.6509 | 0.9048 | 0.077 | 0.038 | 224.0 | 207.0 | 245.0 | 210.0 | 256.0 | 299.0 |
| J058 | chr3 | 43549848 | 43551471 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.3 | 0.0109 | 0.8145 | NA | NA | NA | 9.0 | 9.0 | 8.0 | 9.0 | 12.0 | 9.0 |
| J059 | chr3 | 43549848 | 43555277 | TRUE | OK | 225.3 | 0.00166 | 0.8444 | 0.9616 | 0.021 | 0.011 | 235.0 | 206.0 | 209.0 | 209.0 | 241.0 | 260.0 |
| J060 | chr3 | 43551588 | 43555277 | FALSE | LOW_COUNTS_INDEP_FILTER | 5.8 | 0.0189 | 0.2324 | NA | NA | NA | 6.0 | 3.0 | 4.0 | 10.0 | 6.0 | 6.0 |
| J061 | chr3 | 43555469 | 43561219 | TRUE | OK | 276.8 | 0.00117 | 0.5637 | 0.8761 | -0.055 | -0.028 | 305.0 | 257.0 | 256.0 | 271.0 | 274.0 | 307.0 |
| J062 | chr3 | 43561402 | 43565652 | TRUE | OK | 222.3 | 0.00209 | 0.9288 | 0.9832 | -0.012 | -0.006 | 247.0 | 208.0 | 193.0 | 237.0 | 212.0 | 244.0 |
| J063 | chr3 | 43565727 | 43574808 | TRUE | OK | 237.9 | 0.00191 | 0.903 | 0.9768 | -0.016 | -0.008 | 270.0 | 202.0 | 223.0 | 249.0 | 234.0 | 258.0 |
| J064 | chr3 | 43565727 | 43598531 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.044 | 0.2722 | NA | NA | NA | 4.0 | 4.0 | 1.0 | 2.0 | 2.0 | 1.0 |
| J065 | chr3 | 43574864 | 43576691 | TRUE | OK | 213.0 | 0.00233 | 0.7779 | 0.9439 | 0.031 | 0.015 | 239.0 | 181.0 | 193.0 | 233.0 | 205.0 | 235.0 |
| J066 | chr3 | 43574864 | 43580352 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.0849 | 0.9327 | NA | NA | NA | 2.0 | 0.0 | 2.0 | 2.0 | 2.0 | 0.0 |
| J067 | chr3 | 43577261 | 43580352 | TRUE | OK | 149.1 | 0.00449 | 0.6773 | 0.9128 | 0.066 | 0.033 | 163.0 | 129.0 | 132.0 | 143.0 | 140.0 | 194.0 |
| J068 | chr3 | 43580472 | 43598531 | TRUE | OK | 198.3 | 0.00942 | 0.5441 | 0.87 | 0.111 | 0.056 | 227.0 | 161.0 | 168.0 | 238.0 | 173.0 | 231.0 |
| J069 | chr3 | 43580472 | 43605713 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J070 | chr3 | 43598666 | 43600383 | TRUE | OK | 211.5 | 0.0124 | 0.7319 | 0.93 | -0.060 | -0.030 | 245.0 | 184.0 | 198.0 | 259.0 | 168.0 | 222.0 |
| J071 | chr3 | 43598666 | 43605713 | TRUE | OK | 12.2 | 0.0138 | 0.3211 | 0.7984 | -0.388 | -0.194 | 10.0 | 14.0 | 16.0 | 15.0 | 9.0 | 9.0 |
| J072 | chr3 | 43600581 | 43605713 | TRUE | OK | 180.1 | 0.00408 | 0.4817 | 0.8499 | -0.100 | -0.050 | 211.0 | 149.0 | 181.0 | 185.0 | 158.0 | 203.0 |
| J073 | chr3 | 43605863 | 43618019 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.56 | 0.5914 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| J074 | chr3 | 43605863 | 43621772 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.386 | 0.419 | NA | NA | NA | 4.0 | 0.0 | 1.0 | 2.0 | 0.0 | 0.0 |
| J075 | chr3 | 43605863 | 43621908 | TRUE | OK | 124.0 | 0.00203 | 0.5073 | 0.8583 | 0.086 | 0.043 | 135.0 | 103.0 | 112.0 | 138.0 | 121.0 | 140.0 |
| J076 | chr3 | 43605863 | 43652946 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.266 | 0.9554 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 1.0 |
| J077 | chr3 | 43605863 | 43691516 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.56 | 0.5914 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 |
| J078 | chr3 | 43618086 | 43621908 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J079 | chr3 | 43636538 | 43637602 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.265 | 0.2606 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 | 0.0 |
| J080 | chr3 | 43637783 | 43638674 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.558 | 0.5329 | NA | NA | NA | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J081 | chr3 | 43639083 | 43689310 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J082 | chr3 | 43653037 | 43690540 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.565 | 0.5959 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| J083 | chr3 | 43653040 | 43690614 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J084 | chr3 | 43653040 | 43691516 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.167 | 0.9271 | NA | NA | NA | 0.0 | 1.0 | 1.0 | 0.0 | 2.0 | 0.0 |
| J085 | chr3 | 43689476 | 43691516 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.261 | 0.2623 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 | 1.0 |
| N086 | chr3 | 43691039 | 43699275 | TRUE | OK | 353.5 | 0.00747 | 1.874e-11 | 6.404e-08 | 1.079 | 0.540 | 268.0 | 187.0 | 248.0 | 420.0 | 464.0 | 559.0 |
| Color Codes |
|---|
|
NO TEST
|
p > 0.05
|
p < 0.05
|
p < 0.005
|
p < 5e-04
|
p < 5e-05
|