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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (yes/no) | log2FCvst (yes/no) | Normalized Coverage Counts | |||||
MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | MCF10A-KI-BYL719-10 | MCF10A-KI-BYL719-11 | MCF10A-KI-BYL719-12 | ||||||||||||
E001 | chr10 | 103088016 | 103088017 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.8 | 0.197 | 0.989 | NA | NA | NA | 6.9 | 0.0 | 2.0 | 1.0 | 2.9 | 3.9 |
E002 | chr10 | 103088017 | 103088916 | TRUE | OK | 932.3 | 0.0135 | 0.3391 | 0.8037 | -0.182 | -0.091 | 933.8 | 1075.0 | 922.6 | 853.8 | 865.7 | 942.7 |
E003 | chr10 | 103088916 | 103089840 | TRUE | OK | 1231.3 | 0.00191 | 0.6694 | 0.9102 | 0.037 | 0.018 | 1342.0 | 1114.7 | 1206.7 | 1259.8 | 1168.3 | 1296.5 |
E004 | chr10 | 103089840 | 103089908 | TRUE | OK | 275.1 | 0.00207 | 0.2339 | 0.7706 | 0.124 | 0.062 | 294.8 | 234.6 | 262.9 | 304.8 | 275.2 | 278.4 |
E005 | chr10 | 103090610 | 103090787 | TRUE | OK | 339.8 | 0.00143 | 0.1051 | 0.7026 | 0.146 | 0.073 | 350.0 | 284.7 | 337.4 | 348.5 | 354.5 | 363.5 |
E006 | chr10 | 103090935 | 103090996 | TRUE | OK | 316.8 | 0.0022 | 0.8913 | 0.9739 | -0.019 | -0.010 | 360.9 | 261.7 | 333.4 | 313.7 | 293.8 | 337.4 |
E007 | chr10 | 103091563 | 103091615 | TRUE | OK | 316.5 | 0.00387 | 0.8913 | 0.974 | 0.007 | 0.003 | 363.8 | 244.0 | 339.4 | 318.7 | 294.8 | 338.4 |
E008 | chr10 | 103093138 | 103093309 | TRUE | OK | 463.8 | 0.00575 | 0.9966 | 0.9991 | -0.012 | -0.006 | 495.0 | 358.7 | 542.9 | 495.4 | 420.1 | 470.8 |
E009 | chr10 | 103093731 | 103093971 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.1 | 0.0154 | 0.01462 | NA | NA | NA | 4.9 | 6.3 | 6.0 | 12.9 | 11.8 | 12.6 |
E010 | chr10 | 103093971 | 103094038 | TRUE | OK | 343.8 | 0.0048 | 0.8881 | 0.9731 | 0.010 | 0.005 | 356.9 | 273.2 | 397.9 | 379.2 | 322.2 | 333.6 |
E011 | chr10 | 103094347 | 103094368 | TRUE | OK | 305.3 | 0.00349 | 0.6786 | 0.9131 | 0.044 | 0.022 | 315.5 | 244.0 | 343.5 | 337.5 | 289.9 | 301.7 |
E012 | chr10 | 103094368 | 103094455 | TRUE | OK | 386.6 | 0.00244 | 0.8879 | 0.9731 | -0.021 | -0.011 | 420.0 | 317.0 | 430.1 | 401.1 | 375.1 | 376.1 |
E013 | chr10 | 103094455 | 103094535 | FALSE | LOW_COUNTS_INDEP_FILTER | 9.4 | 0.0444 | 0.8709 | NA | NA | NA | 10.8 | 5.2 | 13.1 | 8.9 | 13.7 | 4.8 |
E014 | chr10 | 103095938 | 103095980 | TRUE | OK | 348.2 | 0.00413 | 0.9209 | 0.9815 | 0.000 | 0.000 | 383.6 | 266.9 | 393.8 | 342.5 | 336.9 | 365.5 |
E015 | chr10 | 103097290 | 103097307 | TRUE | OK | 325.3 | 0.00672 | 0.7701 | 0.9412 | 0.028 | 0.014 | 370.7 | 238.8 | 357.6 | 305.8 | 324.1 | 354.8 |
E016 | chr10 | 103097307 | 103097374 | TRUE | OK | 370.7 | 0.00507 | 0.7591 | 0.9381 | 0.028 | 0.014 | 420.0 | 278.4 | 403.9 | 363.4 | 355.5 | 403.2 |
E017 | chr10 | 103097971 | 103098088 | TRUE | OK | 13.9 | 0.0132 | 0.5362 | 0.8675 | 0.231 | 0.115 | 8.9 | 14.6 | 15.1 | 16.9 | 12.7 | 15.5 |
E018 | chr10 | 103098391 | 103098930 | TRUE | OK | 43.1 | 0.042 | 0.1126 | 0.7103 | 0.614 | 0.307 | 43.4 | 17.7 | 41.3 | 35.7 | 46.0 | 74.4 |
E019 | chr10 | 103098930 | 103098970 | TRUE | OK | 273.8 | 0.0059 | 0.4618 | 0.8433 | 0.092 | 0.046 | 304.7 | 193.9 | 298.1 | 279.0 | 266.4 | 300.7 |
E020 | chr10 | 103098970 | 103098984 | TRUE | OK | 213.9 | 0.00565 | 0.66 | 0.9075 | 0.053 | 0.026 | 245.5 | 154.3 | 230.7 | 221.4 | 196.8 | 234.9 |
E021 | chr10 | 103099925 | 103100019 | TRUE | OK | 364.7 | 0.00849 | 0.2135 | 0.7627 | 0.184 | 0.092 | 401.3 | 243.0 | 386.8 | 381.2 | 363.3 | 412.8 |
E022 | chr10 | 103100662 | 103100751 | FALSE | LOW_COUNTS_INDEP_FILTER | 6.1 | 0.038 | 0.9226 | NA | NA | NA | 4.9 | 3.1 | 10.1 | 6.9 | 7.8 | 3.9 |
E023 | chr10 | 103100751 | 103100867 | TRUE | OK | 39.9 | 0.00527 | 9.223e-06 | 0.00516 | 1.010 | 0.505 | 31.6 | 20.9 | 27.2 | 48.6 | 52.9 | 58.0 |
E024 | chr10 | 103100867 | 103100943 | TRUE | OK | 39.1 | 0.0178 | 0.0003808 | 0.07496 | 1.032 | 0.516 | 30.6 | 12.5 | 34.2 | 45.7 | 55.8 | 56.1 |
E025 | chr10 | 103101044 | 103101102 | TRUE | OK | 346.0 | 0.0105 | 0.2643 | 0.7806 | 0.180 | 0.090 | 359.9 | 227.3 | 391.8 | 371.3 | 327.1 | 398.3 |
E026 | chr10 | 103101234 | 103101326 | TRUE | OK | 417.1 | 0.00956 | 0.297 | 0.7908 | 0.160 | 0.080 | 450.6 | 281.5 | 457.3 | 456.7 | 385.8 | 470.8 |
E027 | chr10 | 103105357 | 103105381 | TRUE | OK | 73.8 | 0.0132 | 0.8569 | 0.965 | 0.035 | 0.018 | 79.9 | 50.1 | 88.6 | 69.5 | 60.7 | 93.8 |
E028 | chr10 | 103105705 | 103105759 | TRUE | OK | 330.4 | 0.0119 | 0.6927 | 0.9176 | 0.051 | 0.026 | 353.0 | 225.2 | 396.8 | 366.3 | 293.8 | 347.1 |
E029 | chr10 | 103105759 | 103105801 | TRUE | OK | 284.6 | 0.00959 | 0.7792 | 0.9443 | 0.031 | 0.015 | 309.6 | 200.2 | 335.4 | 314.7 | 250.7 | 296.8 |
E030 | chr10 | 103106588 | 103106650 | TRUE | OK | 318.3 | 0.00594 | 0.6908 | 0.917 | 0.042 | 0.021 | 354.0 | 231.5 | 356.6 | 339.5 | 297.7 | 330.7 |
E031 | chr10 | 103106650 | 103106684 | TRUE | OK | 291.1 | 0.00415 | 0.5229 | 0.8631 | 0.070 | 0.035 | 333.3 | 217.9 | 302.2 | 308.8 | 283.0 | 301.7 |
E032 | chr10 | 103106684 | 103106687 | TRUE | OK | 258.0 | 0.00403 | 0.4653 | 0.8445 | 0.084 | 0.042 | 300.7 | 197.1 | 254.8 | 273.0 | 253.6 | 268.8 |
E033 | chr10 | 103106687 | 103106706 | TRUE | OK | 291.9 | 0.00316 | 0.2638 | 0.7802 | 0.124 | 0.062 | 329.3 | 225.2 | 286.1 | 298.8 | 289.9 | 322.0 |
E034 | chr10 | 103111744 | 103111805 | TRUE | OK | 28.2 | 0.0104 | 0.131 | 0.724 | 0.418 | 0.209 | 22.7 | 17.7 | 32.2 | 25.8 | 34.3 | 36.7 |
E035 | chr10 | 103139405 | 103139479 | TRUE | OK | 334.2 | 0.00709 | 0.8201 | 0.9551 | -0.053 | -0.027 | 407.2 | 254.4 | 357.6 | 306.8 | 327.1 | 351.9 |
E036 | chr10 | 103140116 | 103140192 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.854 | 0.4041 | NA | NA | NA | 0.0 | 2.1 | 0.0 | 0.0 | 0.0 | 0.0 |
E037 | chr10 | 103169283 | 103169449 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.0 | 0.143 | 0.7473 | NA | NA | NA | 1.0 | 2.1 | 8.1 | 2.0 | 3.9 | 6.8 |
E038 | chr10 | 103174857 | 103174982 | TRUE | OK | 367.7 | 0.00528 | 0.9973 | 0.9992 | -0.013 | -0.006 | 426.9 | 280.5 | 399.9 | 368.3 | 333.0 | 397.4 |
E039 | chr10 | 103181184 | 103181320 | TRUE | OK | 157.2 | 0.0158 | 0.2689 | 0.782 | 0.214 | 0.107 | 154.8 | 91.8 | 191.4 | 169.8 | 155.7 | 179.8 |
E040 | chr10 | 103193235 | 103193272 | TRUE | OK | 95.9 | 0.0119 | 0.7986 | 0.9494 | 0.048 | 0.024 | 108.5 | 65.7 | 108.8 | 98.3 | 76.4 | 118.0 |
E041 | chr10 | 103193272 | 103193298 | TRUE | OK | 12.6 | 0.0184 | 0.8962 | 0.9753 | -0.045 | -0.022 | 11.8 | 14.6 | 12.1 | 16.9 | 12.7 | 7.7 |
E042 | chr10 | 103193298 | 103193306 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.3 | 0.0447 | 0.3946 | NA | NA | NA | 3.0 | 4.2 | 5.0 | 3.0 | 3.9 | 1.0 |
J043 | chr10 | 103089908 | 103090610 | TRUE | OK | 186.4 | 0.00134 | 0.04616 | 0.6143 | 0.213 | 0.106 | 190.3 | 158.5 | 171.2 | 197.6 | 197.8 | 203.0 |
J044 | chr10 | 103089908 | 103090935 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.0382 | 0.9673 | NA | NA | NA | 3.0 | 1.0 | 3.0 | 2.0 | 2.9 | 1.9 |
J045 | chr10 | 103090787 | 103090935 | TRUE | OK | 173.1 | 0.00149 | 0.9592 | 0.9905 | -0.009 | -0.004 | 193.3 | 148.1 | 179.3 | 164.8 | 171.4 | 181.8 |
J046 | chr10 | 103090996 | 103091563 | TRUE | OK | 257.1 | 0.00201 | 0.6258 | 0.8964 | 0.047 | 0.024 | 283.0 | 202.3 | 274.0 | 258.1 | 240.9 | 284.2 |
J047 | chr10 | 103091615 | 103093138 | TRUE | OK | 274.2 | 0.00611 | 0.7659 | 0.94 | -0.060 | -0.030 | 317.5 | 204.4 | 316.3 | 270.0 | 243.8 | 293.0 |
J048 | chr10 | 103093309 | 103093971 | TRUE | OK | 211.3 | 0.0101 | 0.8987 | 0.9758 | 0.016 | 0.008 | 216.9 | 159.5 | 253.8 | 253.2 | 181.2 | 203.0 |
J049 | chr10 | 103094038 | 103094347 | TRUE | OK | 277.9 | 0.00244 | 0.894 | 0.9746 | 0.011 | 0.005 | 287.9 | 231.5 | 311.2 | 306.8 | 262.4 | 267.8 |
J050 | chr10 | 103094455 | 103095938 | TRUE | OK | 295.1 | 0.0022 | 0.8866 | 0.9728 | -0.022 | -0.011 | 324.4 | 234.6 | 332.4 | 287.9 | 283.0 | 308.4 |
J051 | chr10 | 103095980 | 103097290 | TRUE | OK | 297.4 | 0.00728 | 0.9817 | 0.9956 | -0.015 | -0.008 | 340.2 | 215.8 | 340.4 | 279.0 | 287.9 | 321.0 |
J052 | chr10 | 103097374 | 103098930 | TRUE | OK | 230.1 | 0.00529 | 0.4756 | 0.848 | 0.090 | 0.045 | 249.5 | 163.7 | 256.8 | 229.3 | 224.3 | 257.2 |
J053 | chr10 | 103098088 | 103098930 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.211 | 0.659 | NA | NA | NA | 1.0 | 2.1 | 1.0 | 3.0 | 0.0 | 0.0 |
J054 | chr10 | 103098984 | 103099925 | TRUE | OK | 190.8 | 0.00869 | 0.4549 | 0.841 | 0.115 | 0.057 | 214.0 | 127.2 | 209.5 | 202.5 | 173.3 | 218.5 |
J055 | chr10 | 103100019 | 103100662 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J056 | chr10 | 103100019 | 103100751 | TRUE | OK | 18.3 | 0.0143 | 0.001831 | 0.1818 | 1.080 | 0.540 | 18.7 | 9.4 | 7.1 | 21.8 | 26.4 | 26.1 |
J057 | chr10 | 103100019 | 103101044 | TRUE | OK | 233.9 | 0.0047 | 0.2546 | 0.7773 | 0.146 | 0.073 | 240.6 | 165.8 | 261.9 | 243.2 | 229.2 | 263.0 |
J058 | chr10 | 103100943 | 103101044 | TRUE | OK | 21.7 | 0.0151 | 4.351e-05 | 0.01692 | 1.379 | 0.689 | 15.8 | 4.2 | 16.1 | 27.8 | 28.4 | 37.7 |
J059 | chr10 | 103101102 | 103101234 | TRUE | OK | 292.6 | 0.0115 | 0.2536 | 0.7768 | 0.197 | 0.098 | 314.5 | 187.7 | 320.3 | 316.7 | 269.3 | 347.1 |
J060 | chr10 | 103101326 | 103105357 | TRUE | OK | 70.6 | 0.016 | 0.9287 | 0.9832 | 0.018 | 0.009 | 75.9 | 48.0 | 86.6 | 65.5 | 55.8 | 91.8 |
J061 | chr10 | 103101326 | 103105705 | TRUE | OK | 186.2 | 0.0108 | 0.2371 | 0.7712 | 0.206 | 0.103 | 199.2 | 116.8 | 204.5 | 222.4 | 179.2 | 195.3 |
J062 | chr10 | 103105381 | 103105705 | TRUE | OK | 65.5 | 0.0132 | 0.696 | 0.9186 | -0.103 | -0.052 | 74.9 | 45.9 | 82.6 | 60.6 | 49.9 | 79.3 |
J063 | chr10 | 103105801 | 103106588 | TRUE | OK | 221.0 | 0.00791 | 0.9405 | 0.9859 | -0.022 | -0.011 | 233.7 | 167.9 | 265.9 | 243.2 | 182.1 | 233.0 |
J064 | chr10 | 103105801 | 103111744 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J065 | chr10 | 103106706 | 103111744 | TRUE | OK | 22.8 | 0.00624 | 0.09488 | 0.6937 | 0.465 | 0.232 | 20.7 | 13.6 | 23.2 | 21.8 | 29.4 | 28.0 |
J066 | chr10 | 103106706 | 103139405 | TRUE | OK | 235.2 | 0.00404 | 0.7294 | 0.9293 | 0.039 | 0.019 | 278.1 | 191.9 | 226.6 | 221.4 | 235.0 | 258.1 |
J067 | chr10 | 103111805 | 103139405 | TRUE | OK | 17.2 | 0.0164 | 0.405 | 0.8255 | 0.290 | 0.145 | 11.8 | 12.5 | 22.2 | 13.9 | 21.5 | 21.3 |
J068 | chr10 | 103111805 | 103174857 | FALSE | LOW_COUNTS_INDEP_FILTER | 4.3 | 0.145 | 0.659 | NA | NA | NA | 6.9 | 2.1 | 5.0 | 1.0 | 2.0 | 8.7 |
J069 | chr10 | 103139479 | 103140116 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.539 | 0.5392 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J070 | chr10 | 103139479 | 103174857 | TRUE | OK | 229.4 | 0.00483 | 0.3395 | 0.8038 | -0.145 | -0.072 | 287.9 | 186.6 | 245.8 | 209.5 | 203.7 | 242.7 |
J071 | chr10 | 103139479 | 103193235 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.0803 | 0.2783 | NA | NA | NA | 3.0 | 1.0 | 1.0 | 0.0 | 1.0 | 1.0 |
J072 | chr10 | 103169449 | 103174857 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.5 | 0.277 | 0.6529 | NA | NA | NA | 0.0 | 2.1 | 7.1 | 1.0 | 3.9 | 6.8 |
J073 | chr10 | 103174982 | 103181184 | TRUE | OK | 67.5 | 0.00595 | 0.9521 | 0.9889 | -0.001 | -0.000 | 76.9 | 46.9 | 78.6 | 70.5 | 71.5 | 60.9 |
J074 | chr10 | 103174982 | 103193235 | TRUE | OK | 67.1 | 0.0195 | 0.6805 | 0.9137 | 0.103 | 0.052 | 83.8 | 42.8 | 67.5 | 76.4 | 49.0 | 83.1 |
N075 | chr10 | 103174982 | 103181230 | TRUE | OK | 60.3 | 0.0207 | 0.105 | 0.7025 | 0.449 | 0.225 | 46.3 | 35.5 | 71.5 | 64.5 | 55.8 | 88.0 |
N076 | chr10 | 103181328 | 103193235 | TRUE | OK | 25.7 | 0.0268 | 0.9029 | 0.9768 | -0.065 | -0.032 | 19.7 | 19.8 | 39.3 | 19.9 | 23.5 | 31.9 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000076685.18 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |