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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr2 | 96010550 | 96010556 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.769 | 0.1236 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| E002 | chr2 | 96010556 | 96010607 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.205 | 0.2026 | NA | NA | NA | 1.0 | 2.0 | 0.0 | 2.0 | 0.0 | 0.0 |
| E003 | chr2 | 96010607 | 96010613 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.392 | 0.1502 | NA | NA | NA | 1.0 | 2.0 | 0.0 | 3.0 | 0.0 | 0.0 |
| E004 | chr2 | 96010613 | 96010722 | TRUE | OK | 6.5 | 0.0252 | 0.0005621 | 0.05366 | 2.019 | 1.009 | 8.0 | 9.0 | 7.0 | 6.0 | 8.0 | 1.0 |
| E005 | chr2 | 96010722 | 96010732 | TRUE | OK | 6.3 | 0.0255 | 0.001351 | 0.09474 | 1.914 | 0.957 | 8.0 | 9.0 | 7.0 | 5.0 | 8.0 | 1.0 |
| E006 | chr2 | 96010732 | 96010851 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.689 | 0.05157 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 |
| E007 | chr2 | 96013723 | 96013729 | TRUE | OK | 3.7 | 0.205 | 0.00448 | 0.1908 | 2.937 | 1.469 | 4.0 | 1.0 | 5.0 | 3.0 | 1.0 | 8.0 |
| E008 | chr2 | 96013729 | 96013971 | TRUE | OK | 8.0 | 0.0936 | 4.264e-06 | 0.00121 | 3.133 | 1.567 | 9.0 | 4.0 | 8.0 | 6.0 | 6.0 | 15.0 |
| E009 | chr2 | 96015108 | 96015325 | TRUE | OK | 9.4 | 0.0666 | 1.246e-05 | 0.002924 | 2.614 | 1.307 | 12.0 | 9.0 | 9.0 | 6.0 | 6.0 | 15.0 |
| E010 | chr2 | 96019200 | 96019260 | TRUE | OK | 12.3 | 0.031 | 4.018e-10 | 3.665e-07 | 2.873 | 1.436 | 17.0 | 11.0 | 9.0 | 16.0 | 8.0 | 14.0 |
| E011 | chr2 | 96019537 | 96019700 | TRUE | OK | 18.9 | 0.0118 | 3.215e-13 | 5.254e-10 | 2.571 | 1.285 | 28.0 | 18.0 | 18.0 | 22.0 | 16.0 | 13.0 |
| E012 | chr2 | 96021124 | 96021233 | TRUE | OK | 23.4 | 0.0136 | 9.497e-22 | 4.217e-18 | 3.194 | 1.596 | 33.0 | 16.0 | 19.0 | 27.0 | 25.0 | 22.0 |
| E013 | chr2 | 96021367 | 96021465 | TRUE | OK | 19.3 | 0.0413 | 1.495e-11 | 1.821e-08 | 3.032 | 1.516 | 31.0 | 11.0 | 16.0 | 25.0 | 23.0 | 12.0 |
| E014 | chr2 | 96021597 | 96021608 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.9 | 0.0954 | 0.03158 | NA | NA | NA | 5.0 | 2.0 | 0.0 | 2.0 | 2.0 | 1.0 |
| E015 | chr2 | 96021608 | 96021834 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.0803 | 0.04317 | NA | NA | NA | 5.0 | 3.0 | 0.0 | 2.0 | 2.0 | 1.0 |
| E016 | chr2 | 96022673 | 96022732 | TRUE | OK | 138.5 | 0.0039 | 7.689e-26 | 4.568e-22 | -2.700 | -1.349 | 296.0 | 270.0 | 248.0 | 16.0 | 14.0 | 6.0 |
| E017 | chr2 | 96022732 | 96022753 | TRUE | OK | 12.7 | 0.0149 | 4.17e-11 | 4.688e-08 | 2.746 | 1.373 | 12.0 | 15.0 | 12.0 | 12.0 | 18.0 | 7.0 |
| E018 | chr2 | 96022753 | 96022893 | TRUE | OK | 13.7 | 0.0407 | 6.388e-07 | 0.0002466 | 2.475 | 1.237 | 10.0 | 18.0 | 17.0 | 10.0 | 20.0 | 6.0 |
| E019 | chr2 | 96022893 | 96023249 | TRUE | OK | 191.6 | 0.0337 | 6.477e-09 | 4.334e-06 | -2.094 | -1.045 | 379.0 | 373.0 | 332.0 | 20.0 | 46.0 | 21.0 |
| E020 | chr2 | 96023249 | 96023380 | TRUE | OK | 124.7 | 0.00497 | 1.503e-20 | 6.232e-17 | -2.495 | -1.246 | 285.0 | 229.0 | 220.0 | 10.0 | 18.0 | 6.0 |
| J021 | chr2 | 96010722 | 96013723 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J022 | chr2 | 96010732 | 96021124 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.2 | 0.0412 | 0.1387 | NA | NA | NA | 2.0 | 4.0 | 3.0 | 1.0 | 2.0 | 1.0 |
| J023 | chr2 | 96010851 | 96021124 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J024 | chr2 | 96013971 | 96015108 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.9 | 0.219 | 0.0002817 | NA | NA | NA | 0.0 | 4.0 | 1.0 | 2.0 | 3.0 | 7.0 |
| J025 | chr2 | 96015325 | 96019200 | TRUE | OK | 7.9 | 0.215 | 1.695e-05 | 0.003739 | 3.777 | 1.888 | 0.0 | 6.0 | 9.0 | 12.0 | 7.0 | 12.0 |
| J026 | chr2 | 96019260 | 96019537 | TRUE | OK | 4.4 | 0.0411 | 1.184e-08 | 7.492e-06 | 3.894 | 1.947 | 1.0 | 3.0 | 4.0 | 3.0 | 8.0 | 7.0 |
| J027 | chr2 | 96019700 | 96021124 | TRUE | OK | 19.5 | 0.0694 | 5.355e-11 | 5.93e-08 | 3.481 | 1.740 | 25.0 | 8.0 | 17.0 | 32.0 | 18.0 | 18.0 |
| J028 | chr2 | 96021233 | 96021367 | TRUE | OK | 15.9 | 0.0462 | 8.955e-10 | 7.386e-07 | 2.942 | 1.470 | 26.0 | 9.0 | 13.0 | 22.0 | 17.0 | 10.0 |
| J029 | chr2 | 96021465 | 96021597 | TRUE | OK | 4.3 | 0.0305 | 0.0003358 | 0.0377 | 2.376 | 1.188 | 9.0 | 4.0 | 2.0 | 5.0 | 4.0 | 3.0 |
| J030 | chr2 | 96021465 | 96022673 | TRUE | OK | 8.8 | 0.0228 | 5.2e-10 | 4.6e-07 | 3.060 | 1.530 | 11.0 | 5.0 | 8.0 | 12.0 | 13.0 | 4.0 |
| J031 | chr2 | 96022753 | 96022893 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.041 | 2.818e-05 | NA | NA | NA | 2.0 | 4.0 | 0.0 | 4.0 | 3.0 | 3.0 |
| N032 | chr2 | 96022275 | 96022667 | TRUE | OK | 90.1 | 0.00312 | 6.483e-41 | 8.907e-37 | -28.607 | -14.303 | 214.0 | 187.0 | 156.0 | 0.0 | 0.0 | 0.0 |
| N033 | chr2 | 96022723 | 96022957 | TRUE | OK | 103.8 | 0.00279 | 2.34e-48 | 4.899e-44 | -28.928 | -14.463 | 231.0 | 215.0 | 192.0 | 0.0 | 0.0 | 0.0 |
| N034 | chr2 | 96023023 | 96023105 | TRUE | OK | 85.9 | 0.00582 | 7.181e-36 | 7.175e-32 | -28.492 | -14.245 | 188.0 | 166.0 | 172.0 | 0.0 | 0.0 | 0.0 |
| N035 | chr2 | 96023226 | 96023308 | TRUE | OK | 76.5 | 0.00601 | 1.056e-31 | 8.6e-28 | -28.247 | -14.123 | 162.0 | 153.0 | 153.0 | 0.0 | 0.0 | 0.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000231584.8 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |