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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr2 | 172480839 | 172481021 | TRUE | OK | 11.3 | 0.0215 | 0.2198 | 0.7351 | 0.521 | 0.260 | 12.0 | 13.0 | 8.0 | 14.0 | 14.0 | 7.0 |
| E002 | chr2 | 172495374 | 172495516 | TRUE | OK | 11.5 | 0.022 | 0.0002387 | 0.02969 | 1.629 | 0.814 | 7.0 | 9.0 | 5.0 | 23.0 | 14.0 | 11.0 |
| E003 | chr2 | 172503438 | 172504142 | TRUE | OK | 3373.5 | 0.00169 | 3.965e-12 | 5.25e-09 | -0.745 | -0.362 | 4648.0 | 3829.0 | 3446.0 | 3175.0 | 2332.0 | 3059.0 |
| E004 | chr2 | 172509028 | 172509294 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.4 | 0.344 | 0.8587 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 0.0 | 0.0 | 1.0 |
| E005 | chr2 | 172509602 | 172509813 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.359 | 0.8544 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| E006 | chr2 | 172512333 | 172512510 | TRUE | OK | 34.2 | 0.0063 | 3.723e-10 | 3.424e-07 | 1.554 | 0.777 | 24.0 | 22.0 | 19.0 | 43.0 | 43.0 | 54.0 |
| E007 | chr2 | 172512510 | 172512518 | TRUE | OK | 14.3 | 0.0132 | 0.00116 | 0.08588 | 1.196 | 0.598 | 14.0 | 10.0 | 8.0 | 14.0 | 19.0 | 21.0 |
| E008 | chr2 | 172552614 | 172552708 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.061 | 0.1351 | NA | NA | NA | 1.0 | 1.0 | 2.0 | 2.0 | 2.0 | 4.0 |
| E009 | chr2 | 172555425 | 172555580 | TRUE | OK | 5.8 | 0.0328 | 0.3756 | 0.8008 | 0.514 | 0.257 | 5.0 | 8.0 | 4.0 | 9.0 | 6.0 | 3.0 |
| E010 | chr2 | 172556088 | 172556407 | TRUE | OK | 185.3 | 0.00185 | 3.919e-10 | 3.582e-07 | 0.711 | 0.356 | 210.0 | 161.0 | 143.0 | 219.0 | 176.0 | 212.0 |
| E011 | chr2 | 172556407 | 172556408 | TRUE | OK | 8.8 | 0.0207 | 0.2001 | 0.7231 | 0.596 | 0.298 | 11.0 | 4.0 | 10.0 | 13.0 | 7.0 | 8.0 |
| E012 | chr2 | 172556408 | 172556529 | TRUE | OK | 9.1 | 0.017 | 0.1889 | 0.7165 | 0.590 | 0.295 | 11.0 | 5.0 | 10.0 | 13.0 | 7.0 | 9.0 |
| E013 | chr2 | 172556529 | 172556596 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.4 | 0.113 | 0.7987 | NA | NA | NA | 0.0 | 2.0 | 3.0 | 1.0 | 1.0 | 1.0 |
| J014 | chr2 | 172481021 | 172495374 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.2 | 0.348 | 0.3737 | NA | NA | NA | 1.0 | 4.0 | 0.0 | 4.0 | 4.0 | 0.0 |
| J015 | chr2 | 172495516 | 172512333 | TRUE | OK | 5.9 | 0.0772 | 0.02908 | 0.447 | 1.616 | 0.808 | 4.0 | 5.0 | 2.0 | 16.0 | 4.0 | 5.0 |
| J016 | chr2 | 172504142 | 172512333 | TRUE | OK | 15.5 | 0.0326 | 7.453e-05 | 0.01218 | 1.774 | 0.887 | 7.0 | 8.0 | 11.0 | 16.0 | 18.0 | 32.0 |
| J017 | chr2 | 172509294 | 172509602 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J018 | chr2 | 172509813 | 172512333 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J019 | chr2 | 172512518 | 172556088 | TRUE | OK | 10.5 | 0.0125 | 0.003846 | 0.1752 | 1.178 | 0.589 | 12.0 | 8.0 | 4.0 | 11.0 | 14.0 | 15.0 |
| J020 | chr2 | 172552708 | 172556088 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.168 | 0.4371 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 1.0 | 1.0 | 0.0 |
| J021 | chr2 | 172555580 | 172556088 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.257 | 0.848 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 | 0.0 |
| N022 | chr2 | 172480051 | 172484781 | TRUE | OK | 3024.7 | 0.115 | 0.2911 | 0.7674 | -0.708 | -0.351 | 4205.0 | 3523.0 | 3168.0 | 3099.0 | 1635.0 | 2763.0 |
| N023 | chr2 | 172484942 | 172485120 | TRUE | OK | 3313.3 | 0.209 | 0.007589 | 0.2516 | -2.093 | -1.018 | 4577.0 | 3951.0 | 3531.0 | 3251.0 | 1876.0 | 2947.0 |
| N024 | chr2 | 172485264 | 172487022 | TRUE | OK | 2486.4 | 0.0293 | 0.05422 | 0.5451 | -0.526 | -0.262 | 3442.0 | 2911.0 | 2717.0 | 2393.0 | 1381.0 | 2258.0 |
| N025 | chr2 | 172487138 | 172487263 | TRUE | OK | 3587.4 | 4.27 | 0.5096 | 0.8514 | -1.125 | -0.530 | 4992.0 | 4121.0 | 3393.0 | 3896.0 | 2152.0 | 3293.0 |
| N026 | chr2 | 172487453 | 172487546 | TRUE | OK | 2584.5 | 0.00385 | 8.572e-10 | 7.165e-07 | -0.681 | -0.339 | 3777.0 | 2992.0 | 2771.0 | 2345.0 | 1626.0 | 2212.0 |
| N027 | chr2 | 172487630 | 172487727 | TRUE | OK | 3368.6 | 0.727 | 0.0003682 | 0.04013 | -5.112 | -2.357 | 4854.0 | 3981.0 | 3708.0 | 3074.0 | 1978.0 | 2885.0 |
| N028 | chr2 | 172487807 | 172487960 | TRUE | OK | 2924.9 | 0.0237 | 2.975e-06 | 0.0009027 | -1.210 | -0.600 | 4311.0 | 3527.0 | 3069.0 | 2718.0 | 1713.0 | 2477.0 |
| N029 | chr2 | 172488038 | 172488125 | TRUE | OK | 2970.6 | 0.0137 | 3.415e-13 | 5.561e-10 | -1.454 | -0.720 | 4290.0 | 3541.0 | 3291.0 | 2647.0 | 1798.0 | 2490.0 |
| N030 | chr2 | 172488228 | 172489484 | TRUE | OK | 3232.6 | 0.0323 | 1.006e-09 | 8.234e-07 | -1.881 | -0.922 | 4674.0 | 3757.0 | 3456.0 | 3011.0 | 2005.0 | 2759.0 |
| N031 | chr2 | 172488228 | 172491023 | TRUE | OK | 61.5 | 0.0042 | 0.009678 | 0.2836 | -0.493 | -0.246 | 87.0 | 73.0 | 83.0 | 50.0 | 39.0 | 40.0 |
| N032 | chr2 | 172489613 | 172491023 | TRUE | OK | 191.3 | 0.00402 | 6.718e-05 | 0.01125 | -0.553 | -0.277 | 278.0 | 237.0 | 249.0 | 134.0 | 105.0 | 156.0 |
| N033 | chr2 | 172489658 | 172491023 | TRUE | OK | 3279.7 | 1.43 | 0.1137 | 0.6527 | -2.425 | -1.183 | 4768.0 | 3693.0 | 3676.0 | 2975.0 | 2082.0 | 2736.0 |
| N034 | chr2 | 172491122 | 172491220 | TRUE | OK | 3482.4 | 0.00381 | 4.043e-249 | 4.443e-244 | -33.056 | -5.740 | 5134.0 | 4076.0 | 3881.0 | 2977.0 | 2247.0 | 2858.0 |
| N035 | chr2 | 172491331 | 172491424 | TRUE | OK | 2996.5 | 0.0229 | 0.01155 | 0.3069 | -0.653 | -0.323 | 4334.0 | 3528.0 | 2964.0 | 2650.0 | 2090.0 | 2673.0 |
| N036 | chr2 | 172491523 | 172497974 | TRUE | OK | 2765.3 | 0.00344 | 3.865e-05 | 0.007174 | -0.452 | -0.225 | 3926.0 | 3233.0 | 2801.0 | 2492.0 | 1909.0 | 2454.0 |
| N037 | chr2 | 172498100 | 172501771 | TRUE | OK | 1980.2 | 0.00775 | 0.5618 | 0.8703 | -0.087 | -0.043 | 2845.0 | 2279.0 | 1893.0 | 1989.0 | 1367.0 | 1688.0 |
| N038 | chr2 | 172498100 | 172504090 | TRUE | OK | 217.2 | 0.0017 | 0.001603 | 0.1057 | 0.335 | 0.168 | 288.0 | 206.0 | 193.0 | 221.0 | 180.0 | 231.0 |
| N039 | chr2 | 172501901 | 172504090 | TRUE | OK | 2211.2 | 0.000608 | 2.732e-05 | 0.005485 | -0.242 | -0.121 | 3097.0 | 2560.0 | 2273.0 | 2072.0 | 1505.0 | 1931.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000225205.5 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |