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Normalized Counts Table (ENSG00000197756.9)

binID	chr	start	end	testable	status	baseMean	dispersion	pvalue	padjust	log2FC (mutant/control)	log2FCvst (mutant/control)	Normalized Coverage Counts
												MCF10A-parental-DMSO-1	MCF10A-parental-DMSO-2	MCF10A-parental-DMSO-3	MCF10A-KI-DMSO-7	MCF10A-KI-DMSO-8	MCF10A-KI-DMSO-9
E001	chr2	216498188	216498824	TRUE	OK	283.6	0.00218	0.01691	0.3629	0.242	0.121	229.4	251.4	269.4	280.7	386.5	284.5
E002	chr2	216498824	216498843	TRUE	OK	410.6	0.00291	0.001134	0.0846	0.335	0.167	325.0	360.3	361.4	414.1	556.2	446.9
E003	chr2	216498843	216498849	TRUE	OK	572.2	0.00255	0.0001983	0.02594	0.350	0.175	449.5	503.8	496.6	577.2	787.7	618.3
E004	chr2	216498849	216498854	TRUE	OK	1874.0	0.00507	0.08097	0.6042	0.190	0.095	1520.8	1909.3	1630.7	1919.2	2420.8	1842.9
E005	chr2	216498854	216498861	TRUE	OK	6072.1	0.00314	0.9414	0.9867	-0.027	-0.013	5727.7	6156.6	5807.7	5773.6	7357.8	5609.4
E006	chr2	216498861	216498866	TRUE	OK	9111.9	0.00337	0.3586	0.7946	-0.111	-0.055	9045.8	9300.2	8840.6	8440.9	10788.5	8255.2
E007	chr2	216498866	216498877	TRUE	OK	11932.7	0.00329	0.2912	0.7675	-0.122	-0.061	12121.6	12082.5	11430.2	10951.2	14295.6	10715.4
E008	chr2	216498877	216499085	TRUE	OK	130.0	0.0172	0.1433	0.6828	0.323	0.161	126.2	105.9	99.8	139.3	143.5	165.4
E009	chr2	216499085	216499139	TRUE	OK	137.7	0.00543	0.01719	0.3654	0.357	0.178	119.4	117.8	109.7	153.2	173.9	152.3
E010	chr2	216499139	216499151	TRUE	OK	134.2	0.0038	0.0253	0.4245	0.306	0.153	117.7	122.7	104.2	144.3	173.9	142.2
E011	chr2	216499151	216499180	TRUE	OK	130.9	0.00603	0.05995	0.5599	0.287	0.144	121.1	119.8	97.6	140.3	164.5	142.2
E012	chr2	216499180	216499269	TRUE	OK	527.5	0.00589	0.08042	0.6032	0.232	0.116	414.5	481.0	504.4	464.5	712.3	588.1
E013	chr2	216499269	216499398	TRUE	OK	44547.5	0.00692	0.1508	0.6889	-0.225	-0.111	43474.2	44242.2	42262.1	39605.5	58083.2	39617.8
E014	chr2	216499398	216499831	TRUE	OK	41.2	0.0297	0.1059	0.6432	0.517	0.258	35.0	23.8	38.8	52.4	42.9	54.5
E015	chr2	216499831	216499866	TRUE	OK	13.1	0.0508	0.2914	0.7676	0.505	0.253	11.1	8.9	11.1	19.8	9.4	18.2
E016	chr2	216499866	216499948	TRUE	OK	24.4	0.0117	0.02178	0.4009	0.678	0.339	16.2	16.8	21.1	34.6	31.4	26.2
E017	chr2	216499948	216500031	TRUE	OK	47009.8	0.00542	0.1113	0.6502	-0.195	-0.095	45445.5	46403.0	44674.3	41511.9	62380.1	41644.3
E018	chr2	216500031	216501340	TRUE	OK	842.4	0.0024	9.299e-20	3.618e-16	0.825	0.413	539.9	628.5	580.9	1005.1	1330.4	969.4
E019	chr2	216501340	216501456	TRUE	OK	36830.5	0.00447	0.101	0.6365	-0.178	-0.088	36752.8	35987.3	35534.3	32480.0	48511.9	31716.6
E020	chr2	216501456	216501460	TRUE	OK	3525.3	0.00135	0.2062	0.7269	-0.077	-0.039	3631.1	3403.9	3407.7	2980.7	4707.6	3021.1
E021	chr2	216501460	216501462	TRUE	OK	2117.9	0.00245	0.2663	0.7565	-0.094	-0.047	2264.6	1995.4	2051.9	1803.6	2808.4	1783.4
E022	chr2	216501462	216501463	TRUE	OK	2018.5	0.00255	0.3039	0.7727	-0.089	-0.044	2164.0	1895.5	1946.6	1718.6	2677.5	1708.7
E023	chr2	216501463	216501467	TRUE	OK	1938.6	0.00253	0.3588	0.7948	-0.079	-0.039	2070.2	1823.2	1855.7	1673.2	2580.1	1629.1
E024	chr2	216501467	216504086	TRUE	OK	1692.1	0.00158	0.01375	0.3327	0.180	0.090	1592.5	1554.0	1431.1	1610.9	2441.8	1522.1
E025	chr2	216519331	216519390	TRUE	OK	24.9	0.0241	0.5626	0.8706	-0.233	-0.116	17.1	33.7	27.7	27.7	25.1	18.2
E026	chr2	216520713	216520774	TRUE	OK	51.6	0.00913	0.01036	0.2928	-0.612	-0.306	53.7	66.3	62.1	46.4	41.9	39.3
E027	chr2	216529024	216529269	TRUE	OK	6.8	0.0249	0.1602	0.6962	0.752	0.376	4.3	7.9	2.2	4.9	13.6	8.1
E028	chr2	216529269	216529451	TRUE	OK	139.2	0.00363	0.2062	0.7269	-0.195	-0.098	141.6	156.4	131.9	133.4	156.1	116.0
E029	chr2	216529451	216529454	TRUE	OK	47.5	0.00498	0.6009	0.8837	-0.123	-0.062	53.7	43.6	45.5	46.4	54.5	41.4
E030	chr2	216529454	216529484	TRUE	OK	47.0	0.00515	0.571	0.8737	-0.134	-0.067	52.9	43.6	45.5	46.4	52.4	41.4
E031	chr2	216529484	216529583	TRUE	OK	36.1	0.00995	0.8778	0.9699	-0.064	-0.032	45.2	29.7	31.0	33.6	41.9	35.3
E032	chr2	216529583	216529587	FALSE	LOW_COUNTS_INDEP_FILTER	1.0	0.133	0.1189	NA	NA	NA	0.9	3.0	1.1	0.0	1.0	0.0
E033	chr2	216578920	216579180	TRUE	OK	3.2	0.0406	0.172	0.7048	1.071	0.536	1.7	2.0	2.2	2.0	7.3	4.0
J034	chr2	216498877	216499269	TRUE	OK	11921.9	0.00308	0.2739	0.76	-0.122	-0.061	12102.8	12077.6	11423.5	10942.3	14285.1	10700.3
J035	chr2	216499151	216499269	TRUE	OK	6.1	0.0165	0.4118	0.8151	0.438	0.219	3.4	5.9	5.5	6.9	10.5	4.0
J036	chr2	216499180	216499269	TRUE	OK	4.0	0.0327	0.7515	0.9333	0.192	0.096	3.4	3.0	4.4	6.9	3.1	3.0
J037	chr2	216499398	216499831	TRUE	OK	3.3	0.0743	0.06241	0.5659	1.543	0.771	2.6	1.0	1.1	7.9	3.1	4.0
J038	chr2	216499398	216499948	TRUE	OK	42041.2	0.00617	0.1173	0.6571	-0.218	-0.108	41527.8	41744.0	39827.7	37318.6	54724.8	37104.1
J039	chr2	216499866	216499948	FALSE	LOW_COUNTS_INDEP_FILTER	2.7	0.0478	0.1843	NA	NA	NA	0.0	4.0	1.1	3.0	4.2	4.0
J040	chr2	216500031	216501340	TRUE	OK	36221.8	0.00381	0.01598	0.3546	-0.242	-0.120	36398.0	35654.7	35199.6	31592.5	47469.6	31016.6
J041	chr2	216500031	216519331	TRUE	OK	18.4	0.0268	0.438	0.8251	-0.320	-0.160	13.6	24.7	21.1	21.7	17.8	11.1
J042	chr2	216500031	216520713	TRUE	OK	25.9	0.00744	0.007607	0.2517	-0.754	-0.377	32.4	32.7	29.9	23.7	17.8	19.2
J043	chr2	216500031	216529269	TRUE	OK	61.0	0.00725	0.299	0.7711	-0.219	-0.110	62.3	61.4	66.5	64.2	72.3	39.3
J044	chr2	216500031	216578920	FALSE	LOW_COUNTS_INDEP_FILTER	2.4	0.0494	0.1619	NA	NA	NA	0.0	2.0	2.2	1.0	5.2	4.0
J045	chr2	216519390	216520713	TRUE	OK	15.1	0.0356	0.4429	0.827	-0.386	-0.193	8.5	22.8	18.8	14.8	13.6	12.1
J046	chr2	216520774	216529269	TRUE	OK	33.2	0.0245	0.03633	0.4831	-0.745	-0.373	36.7	52.5	32.1	26.7	22.0	29.3

Color Codes
NO TEST	p > 0.05	p < 0.05	p < 0.005	p < 5e-04	p < 5e-05

Gene ENSG00000197756.9
expr	exprTX	normCt	normCtTX	rExpr	rExprTX	rawCt	rawCtTX
PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT	PLOT
TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE	TABLE