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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Normalized Coverage Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chrX | 154835787 | 154835791 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E002 | chrX | 154835791 | 154836046 | TRUE | OK | 23.1 | 0.0428 | 0.001356 | 0.09492 | 1.423 | 0.711 | 7.7 | 19.8 | 13.3 | 31.6 | 21.0 | 45.4 |
| E003 | chrX | 154836046 | 154837752 | TRUE | OK | 166.0 | 0.00202 | 1.723e-17 | 5.085e-14 | 1.124 | 0.562 | 122.0 | 124.7 | 127.5 | 223.4 | 187.5 | 210.8 |
| E004 | chrX | 154860431 | 154860608 | TRUE | OK | 35.4 | 0.00665 | 0.07869 | 0.6002 | 0.441 | 0.220 | 33.3 | 27.7 | 33.3 | 51.4 | 33.5 | 33.3 |
| E005 | chrX | 154861717 | 154861866 | TRUE | OK | 28.2 | 0.0105 | 0.01134 | 0.3048 | 0.742 | 0.371 | 17.1 | 23.8 | 26.6 | 44.5 | 23.0 | 34.3 |
| E006 | chrX | 154863082 | 154863227 | TRUE | OK | 21.9 | 0.00886 | 0.02336 | 0.4116 | 0.698 | 0.349 | 16.2 | 18.8 | 17.7 | 31.6 | 16.8 | 30.3 |
| E007 | chrX | 154882036 | 154882472 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.295 | 0.783 | NA | NA | NA | 1.7 | 4.0 | 0.0 | 0.0 | 2.1 | 5.0 |
| E008 | chrX | 154883588 | 154884439 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.7 | 0.0939 | 0.325 | NA | NA | NA | 0.9 | 4.0 | 2.2 | 0.0 | 1.0 | 2.0 |
| E009 | chrX | 154886133 | 154886317 | TRUE | OK | 11.4 | 0.0475 | 0.06918 | 0.581 | 0.975 | 0.488 | 6.8 | 11.9 | 5.5 | 17.8 | 6.3 | 20.2 |
| E010 | chrX | 154896076 | 154896232 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.0631 | 0.271 | NA | NA | NA | 2.6 | 0.0 | 2.2 | 4.9 | 2.1 | 2.0 |
| E011 | chrX | 154899865 | 154899951 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.9 | 0.0769 | 0.3162 | NA | NA | NA | 4.3 | 0.0 | 2.2 | 4.9 | 4.2 | 2.0 |
| E012 | chrX | 154901370 | 154901442 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.0498 | 0.1254 | NA | NA | NA | 2.6 | 0.0 | 2.2 | 4.9 | 3.1 | 3.0 |
| E013 | chrX | 154902050 | 154902167 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.0491 | 0.01928 | NA | NA | NA | 1.7 | 0.0 | 1.1 | 4.9 | 3.1 | 4.0 |
| E014 | chrX | 154903905 | 154904088 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.9 | 0.0691 | 0.1313 | NA | NA | NA | 0.9 | 0.0 | 2.2 | 4.0 | 2.1 | 2.0 |
| E015 | chrX | 154904295 | 154904524 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.0967 | 0.8875 | NA | NA | NA | 1.7 | 0.0 | 2.2 | 1.0 | 2.1 | 1.0 |
| E016 | chrX | 154904810 | 154905023 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.0978 | 0.4537 | NA | NA | NA | 0.9 | 1.0 | 4.4 | 1.0 | 1.0 | 1.0 |
| E017 | chrX | 154906419 | 154906573 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.4 | 0.173 | 0.6515 | NA | NA | NA | 0.0 | 1.0 | 4.4 | 2.0 | 0.0 | 1.0 |
| E018 | chrX | 154928570 | 154930152 | TRUE | OK | 10.3 | 0.048 | 0.7418 | 0.9302 | 0.226 | 0.113 | 7.7 | 8.9 | 13.3 | 13.8 | 3.1 | 15.1 |
| E019 | chrX | 154930152 | 154931676 | TRUE | OK | 8.7 | 0.0153 | 0.1223 | 0.6624 | -0.703 | -0.351 | 11.9 | 9.9 | 11.1 | 6.9 | 4.2 | 8.1 |
| E020 | chrX | 154947697 | 154947907 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.062 | 0.693 | NA | NA | NA | 1.7 | 3.0 | 1.1 | 2.0 | 1.0 | 4.0 |
| E021 | chrX | 154953891 | 154954042 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.329 | 0.4839 | NA | NA | NA | 0.0 | 2.0 | 0.0 | 1.0 | 0.0 | 3.0 |
| E022 | chrX | 154956956 | 154957171 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.218 | 0.9968 | NA | NA | NA | 0.9 | 1.0 | 1.1 | 0.0 | 0.0 | 3.0 |
| E023 | chrX | 154961074 | 154961168 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.6 | 0.09 | 0.6705 | NA | NA | NA | 2.6 | 1.0 | 2.2 | 0.0 | 1.0 | 3.0 |
| E024 | chrX | 154965771 | 154965969 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.766 | 0.628 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E025 | chrX | 154965969 | 154966141 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.0 | 0.0414 | 0.2654 | NA | NA | NA | 3.4 | 3.0 | 5.5 | 3.0 | 1.0 | 2.0 |
| E026 | chrX | 154966425 | 154966516 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.5 | 0.0492 | 0.3061 | NA | NA | NA | 2.6 | 3.0 | 4.4 | 3.0 | 1.0 | 1.0 |
| E027 | chrX | 154966516 | 154966687 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.0576 | 0.186 | NA | NA | NA | 2.6 | 3.0 | 4.4 | 3.0 | 1.0 | 0.0 |
| E028 | chrX | 154969330 | 154969552 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.4 | 0.069 | 0.04966 | NA | NA | NA | 4.3 | 4.9 | 2.2 | 3.0 | 0.0 | 0.0 |
| E029 | chrX | 154977351 | 154977441 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E030 | chrX | 154984686 | 154984700 | TRUE | OK | 8.0 | 0.0855 | 0.09384 | 0.626 | -1.057 | -0.528 | 8.5 | 16.8 | 7.8 | 9.9 | 1.0 | 4.0 |
| E031 | chrX | 154984700 | 154984803 | TRUE | OK | 10.8 | 0.0406 | 0.01066 | 0.2961 | -1.295 | -0.648 | 12.8 | 21.8 | 12.2 | 10.9 | 3.1 | 4.0 |
| E032 | chrX | 154987236 | 154987305 | TRUE | OK | 6.7 | 0.0239 | 0.03496 | 0.4767 | -1.138 | -0.569 | 9.4 | 10.9 | 7.8 | 6.9 | 4.2 | 1.0 |
| E033 | chrX | 154992935 | 154993024 | TRUE | OK | 7.5 | 0.021 | 0.04789 | 0.5262 | -1.019 | -0.509 | 6.8 | 11.9 | 12.2 | 4.0 | 6.3 | 4.0 |
| E034 | chrX | 154993024 | 154993148 | TRUE | OK | 9.2 | 0.0239 | 0.03424 | 0.4734 | -1.038 | -0.519 | 10.2 | 8.9 | 18.8 | 4.9 | 6.3 | 6.1 |
| E035 | chrX | 154996972 | 154997095 | TRUE | OK | 8.3 | 0.047 | 0.9218 | 0.9815 | 0.026 | 0.013 | 9.4 | 3.0 | 13.3 | 6.9 | 7.3 | 10.1 |
| E036 | chrX | 154999478 | 154999600 | TRUE | OK | 10.7 | 0.103 | 0.9123 | 0.979 | -0.092 | -0.046 | 18.8 | 4.9 | 10.0 | 9.9 | 4.2 | 16.1 |
| E037 | chrX | 155022409 | 155022431 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.148 | 0.6354 | NA | NA | NA | 0.9 | 0.0 | 1.1 | 2.0 | 0.0 | 1.0 |
| E038 | chrX | 155022431 | 155022496 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.0911 | 0.588 | NA | NA | NA | 0.9 | 2.0 | 2.2 | 2.0 | 0.0 | 1.0 |
| E039 | chrX | 155022496 | 155022715 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E040 | chrX | 155022715 | 155022723 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E041 | chrX | 155026779 | 155026868 | TRUE | OK | 163.0 | 0.00219 | 0.003558 | 0.1677 | -0.389 | -0.194 | 181.7 | 181.1 | 188.5 | 148.2 | 130.9 | 147.3 |
| E042 | chrX | 155026868 | 155026940 | TRUE | OK | 354.0 | 0.00379 | 6.997e-13 | 1.046e-09 | -1.022 | -0.510 | 417.1 | 404.8 | 425.7 | 322.2 | 278.6 | 275.4 |
| J043 | chrX | 154837752 | 154860431 | TRUE | OK | 22.2 | 0.017 | 0.3638 | 0.7964 | 0.309 | 0.154 | 25.6 | 12.9 | 23.3 | 31.6 | 18.9 | 21.2 |
| J044 | chrX | 154860608 | 154861717 | TRUE | OK | 16.2 | 0.00971 | 0.08026 | 0.603 | 0.607 | 0.303 | 9.4 | 17.8 | 13.3 | 24.7 | 13.6 | 18.2 |
| J045 | chrX | 154861866 | 154863082 | TRUE | OK | 16.0 | 0.0149 | 0.04095 | 0.5023 | 0.769 | 0.384 | 10.2 | 11.9 | 15.5 | 26.7 | 10.5 | 21.2 |
| J046 | chrX | 154863227 | 154882036 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J047 | chrX | 154863227 | 154886133 | TRUE | OK | 11.2 | 0.0438 | 0.07303 | 0.5896 | 0.942 | 0.471 | 6.8 | 11.9 | 5.5 | 17.8 | 6.3 | 19.2 |
| J048 | chrX | 154863227 | 154896076 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.156 | 0.6063 | NA | NA | NA | 1.7 | 0.0 | 0.0 | 2.0 | 1.0 | 0.0 |
| J049 | chrX | 154882472 | 154883588 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J050 | chrX | 154896232 | 154899865 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.0 | 0.0474 | 0.487 | NA | NA | NA | 2.6 | 0.0 | 2.2 | 3.0 | 2.1 | 2.0 |
| J051 | chrX | 154899951 | 154901370 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.3 | 0.0421 | 0.2461 | NA | NA | NA | 2.6 | 0.0 | 2.2 | 4.0 | 3.1 | 2.0 |
| J052 | chrX | 154901442 | 154902050 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.8 | 0.0509 | 0.02933 | NA | NA | NA | 1.7 | 0.0 | 0.0 | 4.0 | 2.1 | 3.0 |
| J053 | chrX | 154902167 | 154903905 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.2 | 0.0736 | 0.05102 | NA | NA | NA | 0.0 | 0.0 | 1.1 | 3.0 | 1.0 | 2.0 |
| J054 | chrX | 154904088 | 154904295 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.123 | 0.9268 | NA | NA | NA | 0.9 | 0.0 | 1.1 | 1.0 | 1.0 | 0.0 |
| J055 | chrX | 154904524 | 154904810 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.166 | 0.6533 | NA | NA | NA | 0.9 | 0.0 | 1.1 | 0.0 | 1.0 | 0.0 |
| J056 | chrX | 154905023 | 154906419 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.9 | 0.165 | 0.2599 | NA | NA | NA | 0.0 | 1.0 | 3.3 | 0.0 | 0.0 | 1.0 |
| J057 | chrX | 154906573 | 154928570 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.308 | 0.6202 | NA | NA | NA | 0.0 | 0.0 | 1.1 | 2.0 | 0.0 | 0.0 |
| J058 | chrX | 154931676 | 154947697 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.066 | 0.4374 | NA | NA | NA | 0.9 | 1.0 | 1.1 | 1.0 | 1.0 | 3.0 |
| J059 | chrX | 154931676 | 154953891 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J060 | chrX | 154947907 | 154953891 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.163 | 0.5443 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 1.0 | 0.0 | 1.0 |
| J061 | chrX | 154954042 | 154956956 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.323 | 0.6077 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 0.0 | 2.0 |
| J062 | chrX | 154957171 | 154961074 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.171 | 0.9502 | NA | NA | NA | 0.9 | 0.0 | 1.1 | 0.0 | 0.0 | 2.0 |
| J063 | chrX | 154961168 | 154965969 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.3 | 0.0671 | 0.2291 | NA | NA | NA | 2.6 | 1.0 | 2.2 | 0.0 | 1.0 | 1.0 |
| J064 | chrX | 154966141 | 154966425 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.2 | 0.0468 | 0.2494 | NA | NA | NA | 2.6 | 2.0 | 4.4 | 3.0 | 0.0 | 1.0 |
| J065 | chrX | 154966687 | 154969330 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.0942 | 0.5033 | NA | NA | NA | 1.7 | 1.0 | 1.1 | 2.0 | 0.0 | 0.0 |
| J066 | chrX | 154969552 | 154977351 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J067 | chrX | 154969552 | 154984686 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.0866 | 0.1548 | NA | NA | NA | 1.7 | 4.0 | 1.1 | 2.0 | 0.0 | 0.0 |
| J068 | chrX | 154977441 | 154984686 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J069 | chrX | 154984803 | 154987236 | TRUE | OK | 5.5 | 0.0189 | 0.007903 | 0.2564 | -1.566 | -0.783 | 8.5 | 9.9 | 6.7 | 4.9 | 2.1 | 1.0 |
| J070 | chrX | 154987305 | 154992935 | TRUE | OK | 5.3 | 0.019 | 0.03896 | 0.4946 | -1.217 | -0.609 | 6.8 | 8.9 | 6.7 | 4.0 | 4.2 | 1.0 |
| J071 | chrX | 154993148 | 154996972 | TRUE | OK | 4.6 | 0.182 | 0.6206 | 0.8907 | -0.658 | -0.329 | 4.3 | 1.0 | 12.2 | 2.0 | 5.2 | 3.0 |
| J072 | chrX | 154997095 | 154999478 | TRUE | OK | 5.7 | 0.0483 | 0.8998 | 0.9758 | 0.070 | 0.035 | 8.5 | 2.0 | 6.7 | 5.9 | 3.1 | 8.1 |
| J073 | chrX | 154999600 | 155022409 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.136 | 0.3165 | NA | NA | NA | 0.0 | 0.0 | 1.1 | 2.0 | 0.0 | 1.0 |
| J074 | chrX | 154999600 | 155022431 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J075 | chrX | 154999600 | 155026779 | TRUE | OK | 6.6 | 0.165 | 0.7366 | 0.9286 | -0.177 | -0.088 | 11.9 | 4.9 | 4.4 | 4.9 | 1.0 | 12.1 |
| J076 | chrX | 155022496 | 155026779 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.101 | 0.2284 | NA | NA | NA | 0.9 | 1.0 | 2.2 | 1.0 | 0.0 | 0.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000185010.15 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |