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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
E001 | chr17 | 76038774 | 76038784 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.152 | 0.7436 | NA | NA | NA | 1.0 | 0.0 | 2.0 | 1.0 | 0.0 | 1.0 |
E002 | chr17 | 76038784 | 76039103 | TRUE | OK | 184.7 | 0.00852 | 0.4335 | 0.8233 | 0.140 | 0.070 | 175.0 | 186.0 | 184.0 | 194.0 | 206.0 | 162.0 |
E003 | chr17 | 76039103 | 76039105 | TRUE | OK | 148.7 | 0.0103 | 0.7208 | 0.924 | 0.077 | 0.038 | 148.0 | 150.0 | 151.0 | 156.0 | 168.0 | 119.0 |
E004 | chr17 | 76039105 | 76039550 | TRUE | OK | 2281.0 | 0.00771 | 0.152 | 0.6901 | 0.219 | 0.110 | 2626.0 | 2174.0 | 1927.0 | 2356.0 | 2571.0 | 2118.0 |
E005 | chr17 | 76039550 | 76039933 | TRUE | OK | 3123.3 | 0.00462 | 0.4134 | 0.8157 | 0.096 | 0.048 | 3826.0 | 3006.0 | 2746.0 | 3204.0 | 3194.0 | 2919.0 |
E006 | chr17 | 76040418 | 76040474 | TRUE | OK | 1492.5 | 0.00216 | 0.1848 | 0.7139 | -0.112 | -0.056 | 1923.0 | 1457.0 | 1456.0 | 1451.0 | 1404.0 | 1342.0 |
E007 | chr17 | 76040474 | 76040902 | TRUE | OK | 44.3 | 0.00782 | 0.483 | 0.8415 | 0.167 | 0.084 | 43.0 | 47.0 | 40.0 | 38.0 | 43.0 | 55.0 |
E008 | chr17 | 76040902 | 76040978 | TRUE | OK | 1406.5 | 0.00218 | 0.1657 | 0.7009 | -0.118 | -0.059 | 1825.0 | 1384.0 | 1360.0 | 1360.0 | 1321.0 | 1266.0 |
E009 | chr17 | 76040978 | 76041628 | TRUE | OK | 78.3 | 0.0198 | 0.7727 | 0.9398 | 0.077 | 0.039 | 99.0 | 89.0 | 53.0 | 63.0 | 92.0 | 79.0 |
E010 | chr17 | 76043374 | 76043828 | TRUE | OK | 36.7 | 0.00691 | 0.9443 | 0.9873 | 0.024 | 0.012 | 42.0 | 37.0 | 35.0 | 38.0 | 25.0 | 45.0 |
E011 | chr17 | 76043828 | 76043958 | TRUE | OK | 1566.6 | 0.00206 | 0.1631 | 0.6982 | -0.116 | -0.058 | 2061.0 | 1541.0 | 1488.0 | 1515.0 | 1428.0 | 1461.0 |
E012 | chr17 | 76044753 | 76045291 | TRUE | OK | 21.8 | 0.00892 | 0.9595 | 0.9911 | -0.010 | -0.005 | 20.0 | 26.0 | 22.0 | 25.0 | 21.0 | 17.0 |
E013 | chr17 | 76045291 | 76045386 | TRUE | OK | 1318.7 | 0.00309 | 0.3281 | 0.7826 | -0.099 | -0.049 | 1768.0 | 1255.0 | 1249.0 | 1338.0 | 1135.0 | 1255.0 |
E014 | chr17 | 76046037 | 76046061 | TRUE | OK | 1160.0 | 0.00446 | 0.2074 | 0.7275 | -0.146 | -0.073 | 1578.0 | 1127.0 | 1109.0 | 1219.0 | 930.0 | 1081.0 |
E015 | chr17 | 76046061 | 76046194 | TRUE | OK | 1984.5 | 0.00495 | 0.05705 | 0.5524 | -0.226 | -0.113 | 2595.0 | 1962.0 | 2052.0 | 2039.0 | 1504.0 | 1870.0 |
E016 | chr17 | 76047905 | 76047970 | TRUE | OK | 1876.8 | 0.00444 | 0.05274 | 0.5412 | -0.217 | -0.108 | 2361.0 | 1908.0 | 1957.0 | 1945.0 | 1421.0 | 1763.0 |
E017 | chr17 | 76047970 | 76049647 | TRUE | OK | 40.3 | 0.00653 | 0.0002472 | 0.03047 | 0.860 | 0.430 | 33.0 | 27.0 | 30.0 | 57.0 | 37.0 | 58.0 |
E018 | chr17 | 76050427 | 76050526 | TRUE | OK | 1936.5 | 0.00251 | 0.05282 | 0.5413 | -0.169 | -0.084 | 2398.0 | 1953.0 | 1988.0 | 1959.0 | 1547.0 | 1864.0 |
E019 | chr17 | 76053448 | 76053648 | TRUE | OK | 55.4 | 0.0051 | 5.101e-30 | 3.934e-26 | -2.650 | -1.325 | 101.0 | 101.0 | 92.0 | 21.0 | 11.0 | 12.0 |
E020 | chr17 | 76053648 | 76053656 | TRUE | OK | 3.4 | 0.0875 | 0.1776 | 0.7086 | -1.139 | -0.570 | 2.0 | 7.0 | 5.0 | 4.0 | 1.0 | 1.0 |
E021 | chr17 | 76057396 | 76057402 | TRUE | OK | 12.8 | 0.0169 | 0.6562 | 0.9029 | -0.165 | -0.082 | 12.0 | 17.0 | 13.0 | 17.0 | 8.0 | 10.0 |
E022 | chr17 | 76057402 | 76057543 | TRUE | OK | 1779.2 | 0.00148 | 0.7383 | 0.929 | -0.021 | -0.011 | 2066.0 | 1794.0 | 1729.0 | 1869.0 | 1524.0 | 1762.0 |
E023 | chr17 | 76060307 | 76060390 | TRUE | OK | 1271.6 | 0.00226 | 0.5965 | 0.8822 | -0.041 | -0.021 | 1508.0 | 1296.0 | 1221.0 | 1366.0 | 1052.0 | 1244.0 |
E024 | chr17 | 76060390 | 76060742 | TRUE | OK | 23.9 | 0.0827 | 0.05454 | 0.546 | 0.946 | 0.473 | 6.0 | 17.0 | 26.0 | 25.0 | 28.0 | 38.0 |
E025 | chr17 | 76061109 | 76061149 | TRUE | OK | 1112.5 | 0.00217 | 0.1606 | 0.6964 | -0.116 | -0.058 | 1365.0 | 1149.0 | 1091.0 | 1166.0 | 896.0 | 1064.0 |
E026 | chr17 | 76061149 | 76061174 | TRUE | OK | 1016.2 | 0.00362 | 0.1313 | 0.6712 | -0.155 | -0.077 | 1270.0 | 1053.0 | 1010.0 | 1065.0 | 777.0 | 977.0 |
E027 | chr17 | 76061174 | 76061219 | TRUE | OK | 1057.3 | 0.00285 | 0.1239 | 0.6643 | -0.144 | -0.072 | 1334.0 | 1076.0 | 1048.0 | 1097.0 | 828.0 | 1019.0 |
E028 | chr17 | 76061219 | 76061491 | TRUE | OK | 14.6 | 0.0102 | 0.9166 | 0.9803 | 0.040 | 0.020 | 17.0 | 16.0 | 12.0 | 12.0 | 14.0 | 17.0 |
E029 | chr17 | 76061491 | 76061574 | TRUE | OK | 1237.5 | 0.00279 | 0.4132 | 0.8156 | -0.073 | -0.037 | 1529.0 | 1223.0 | 1208.0 | 1301.0 | 998.0 | 1229.0 |
E030 | chr17 | 76061574 | 76061653 | TRUE | OK | 23.2 | 0.00823 | 8.734e-05 | 0.01374 | 1.167 | 0.584 | 14.0 | 19.0 | 12.0 | 34.0 | 25.0 | 35.0 |
E031 | chr17 | 76063975 | 76064022 | TRUE | OK | 1136.5 | 0.0031 | 0.6633 | 0.9055 | 0.046 | 0.023 | 1371.0 | 1049.0 | 1087.0 | 1236.0 | 956.0 | 1173.0 |
E032 | chr17 | 76064022 | 76064037 | TRUE | OK | 1010.7 | 0.00371 | 0.5511 | 0.8661 | 0.068 | 0.034 | 1214.0 | 920.0 | 963.0 | 1099.0 | 845.0 | 1070.0 |
E033 | chr17 | 76064037 | 76064127 | TRUE | OK | 1414.7 | 0.00438 | 0.7557 | 0.9346 | 0.039 | 0.020 | 1739.0 | 1296.0 | 1346.0 | 1539.0 | 1167.0 | 1474.0 |
E034 | chr17 | 76064127 | 76064171 | TRUE | OK | 1130.7 | 0.0047 | 0.7454 | 0.9313 | 0.042 | 0.021 | 1411.0 | 1022.0 | 1068.0 | 1245.0 | 932.0 | 1168.0 |
E035 | chr17 | 76067216 | 76067312 | TRUE | OK | 1650.5 | 0.00731 | 0.7283 | 0.9262 | -0.040 | -0.020 | 2099.0 | 1603.0 | 1541.0 | 1854.0 | 1265.0 | 1646.0 |
E036 | chr17 | 76067312 | 76067330 | TRUE | OK | 1248.1 | 0.0122 | 0.4735 | 0.8379 | -0.114 | -0.057 | 1655.0 | 1280.0 | 1132.0 | 1435.0 | 874.0 | 1211.0 |
E037 | chr17 | 76070377 | 76070436 | TRUE | OK | 1476.8 | 0.0101 | 0.4598 | 0.8329 | -0.111 | -0.055 | 1932.0 | 1536.0 | 1333.0 | 1651.0 | 1068.0 | 1452.0 |
E038 | chr17 | 76070436 | 76070444 | TRUE | OK | 1308.2 | 0.00952 | 0.4527 | 0.8301 | -0.109 | -0.054 | 1682.0 | 1379.0 | 1187.0 | 1465.0 | 947.0 | 1283.0 |
E039 | chr17 | 76072307 | 76072344 | TRUE | OK | 1333.2 | 0.00848 | 0.4509 | 0.8294 | -0.105 | -0.052 | 1712.0 | 1401.0 | 1210.0 | 1484.0 | 983.0 | 1303.0 |
E040 | chr17 | 76072344 | 76072491 | TRUE | OK | 1255.4 | 0.00801 | 0.5097 | 0.8515 | -0.088 | -0.044 | 1596.0 | 1324.0 | 1131.0 | 1397.0 | 936.0 | 1235.0 |
E041 | chr17 | 76072491 | 76072497 | TRUE | OK | 96.5 | 0.018 | 0.691 | 0.9144 | 0.139 | 0.070 | 105.0 | 91.0 | 91.0 | 137.0 | 64.0 | 95.0 |
E042 | chr17 | 76072497 | 76072507 | TRUE | OK | 49.0 | 0.0458 | 0.8022 | 0.9482 | 0.169 | 0.085 | 43.0 | 53.0 | 47.0 | 66.0 | 23.0 | 63.0 |
E043 | chr17 | 76072507 | 76072517 | TRUE | OK | 12.1 | 0.0116 | 0.1307 | 0.6706 | 0.587 | 0.294 | 10.0 | 8.0 | 12.0 | 15.0 | 13.0 | 14.0 |
J044 | chr17 | 76039933 | 76040418 | TRUE | OK | 1078.2 | 0.00269 | 0.4395 | 0.8257 | -0.073 | -0.037 | 1401.0 | 1045.0 | 1017.0 | 1086.0 | 1030.0 | 952.0 |
J045 | chr17 | 76040474 | 76040902 | TRUE | OK | 1096.9 | 0.00118 | 0.0103 | 0.2921 | -0.176 | -0.088 | 1434.0 | 1095.0 | 1095.0 | 1042.0 | 993.0 | 982.0 |
J046 | chr17 | 76040978 | 76043828 | TRUE | OK | 1028.2 | 0.0017 | 0.03546 | 0.4792 | -0.166 | -0.083 | 1358.0 | 1030.0 | 1005.0 | 976.0 | 947.0 | 913.0 |
J047 | chr17 | 76043958 | 76045291 | TRUE | OK | 740.4 | 0.00261 | 0.753 | 0.9338 | -0.033 | -0.017 | 978.0 | 696.0 | 680.0 | 722.0 | 686.0 | 727.0 |
J048 | chr17 | 76045386 | 76046037 | TRUE | OK | 909.8 | 0.004 | 0.1237 | 0.664 | -0.174 | -0.087 | 1261.0 | 886.0 | 874.0 | 932.0 | 729.0 | 845.0 |
J049 | chr17 | 76046194 | 76047905 | TRUE | OK | 1450.6 | 0.00698 | 0.04488 | 0.5165 | -0.278 | -0.139 | 1928.0 | 1467.0 | 1522.0 | 1507.0 | 1024.0 | 1346.0 |
J050 | chr17 | 76047970 | 76050427 | TRUE | OK | 1374.5 | 0.00315 | 0.01666 | 0.3607 | -0.236 | -0.118 | 1735.0 | 1383.0 | 1476.0 | 1371.0 | 1054.0 | 1292.0 |
J051 | chr17 | 76050526 | 76053448 | TRUE | OK | 47.7 | 0.00353 | 1.446e-33 | 1.2e-29 | -2.924 | -1.462 | 90.0 | 88.0 | 81.0 | 14.0 | 9.0 | 9.0 |
J052 | chr17 | 76050526 | 76057402 | TRUE | OK | 1098.0 | 0.000559 | 0.8645 | 0.9662 | -0.007 | -0.003 | 1272.0 | 1107.0 | 1059.0 | 1137.0 | 970.0 | 1084.0 |
J053 | chr17 | 76057543 | 76060307 | TRUE | OK | 955.1 | 0.00117 | 0.5241 | 0.8567 | -0.041 | -0.020 | 1133.0 | 976.0 | 916.0 | 1007.0 | 803.0 | 938.0 |
J054 | chr17 | 76060390 | 76061109 | TRUE | OK | 845.3 | 0.00246 | 0.4135 | 0.8157 | -0.070 | -0.035 | 1010.0 | 878.0 | 814.0 | 906.0 | 679.0 | 825.0 |
J055 | chr17 | 76061219 | 76061491 | TRUE | OK | 901.8 | 0.00172 | 0.01995 | 0.3868 | -0.183 | -0.091 | 1142.0 | 939.0 | 904.0 | 921.0 | 709.0 | 845.0 |
J056 | chr17 | 76061574 | 76063975 | TRUE | OK | 871.0 | 0.00366 | 0.96 | 0.9912 | -0.001 | -0.001 | 1085.0 | 819.0 | 828.0 | 921.0 | 707.0 | 913.0 |
J057 | chr17 | 76061653 | 76063975 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
J058 | chr17 | 76064171 | 76067216 | TRUE | OK | 897.9 | 0.00534 | 0.8816 | 0.971 | 0.024 | 0.012 | 1132.0 | 821.0 | 844.0 | 991.0 | 718.0 | 934.0 |
J059 | chr17 | 76064171 | 76070377 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.1 | 0.323 | 0.6474 | NA | NA | NA | 9.0 | 0.0 | 1.0 | 6.0 | 2.0 | 2.0 |
J060 | chr17 | 76067330 | 76070377 | TRUE | OK | 1136.4 | 0.0125 | 0.4036 | 0.8118 | -0.139 | -0.069 | 1519.0 | 1184.0 | 1029.0 | 1293.0 | 788.0 | 1097.0 |
J061 | chr17 | 76067330 | 76072344 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.6 | 0.156 | 0.2411 | NA | NA | NA | 2.0 | 3.0 | 0.0 | 1.0 | 3.0 | 7.0 |
J062 | chr17 | 76070436 | 76072307 | TRUE | OK | 3.2 | 0.0341 | 0.182 | 0.7122 | -1.014 | -0.507 | 5.0 | 2.0 | 6.0 | 1.0 | 2.0 | 3.0 |
J063 | chr17 | 76070444 | 76072307 | TRUE | OK | 1257.5 | 0.00851 | 0.3961 | 0.8084 | -0.119 | -0.060 | 1626.0 | 1315.0 | 1155.0 | 1388.0 | 916.0 | 1234.0 |
Color Codes | |||||
---|---|---|---|---|---|
NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000167881.15 | |||||||
---|---|---|---|---|---|---|---|
expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |