| << | < Prev Gene | TOP | Next Gene > | >> | |
| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Normalized Coverage Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr9 | 116425224 | 116425227 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.765 | 1 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 0.0 |
| E002 | chr9 | 116425227 | 116425589 | TRUE | OK | 9.2 | 0.025 | 0.3258 | 0.7818 | 0.572 | 0.286 | 3.4 | 2.0 | 4.4 | 18.8 | 12.6 | 14.1 |
| E003 | chr9 | 116425589 | 116425626 | TRUE | OK | 7.2 | 0.0366 | 0.2621 | 0.7544 | 0.765 | 0.382 | 2.6 | 1.0 | 3.3 | 14.8 | 7.3 | 14.1 |
| E004 | chr9 | 116425626 | 116425854 | TRUE | OK | 8.6 | 0.0396 | 0.0185 | 0.3767 | 1.692 | 0.846 | 0.0 | 2.0 | 3.3 | 16.8 | 10.5 | 19.2 |
| E005 | chr9 | 116425854 | 116425875 | FALSE | LOW_COUNTS_INDEP_FILTER | 3.1 | 0.0575 | 0.5078 | NA | NA | NA | 0.0 | 1.0 | 2.2 | 2.0 | 7.3 | 6.1 |
| E006 | chr9 | 116425875 | 116426088 | TRUE | OK | 11.9 | 0.0628 | 0.5308 | 0.859 | -0.315 | -0.157 | 4.3 | 7.9 | 6.7 | 8.9 | 27.2 | 16.1 |
| E007 | chr9 | 116437222 | 116437398 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.1 | 0.856 | 0.2478 | NA | NA | NA | 0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E008 | chr9 | 116437499 | 116437591 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.229 | 0.7233 | NA | NA | NA | 0.0 | 0.0 | 1.1 | 1.0 | 1.0 | 0.0 |
| E009 | chr9 | 116440608 | 116440735 | TRUE | OK | 11.0 | 0.0219 | 0.07274 | 0.589 | -0.896 | -0.448 | 6.0 | 5.9 | 10.0 | 10.9 | 21.0 | 12.1 |
| E010 | chr9 | 116440735 | 116440792 | TRUE | OK | 9.8 | 0.0238 | 0.5177 | 0.8542 | -0.337 | -0.169 | 6.0 | 3.0 | 6.7 | 8.9 | 19.9 | 14.1 |
| E011 | chr9 | 116442452 | 116442553 | TRUE | OK | 11.6 | 0.0135 | 0.6716 | 0.9082 | 0.211 | 0.106 | 5.1 | 4.0 | 5.5 | 17.8 | 19.9 | 17.1 |
| E012 | chr9 | 116487358 | 116487500 | TRUE | OK | 14.6 | 0.0111 | 0.06424 | 0.5705 | 0.898 | 0.449 | 4.3 | 4.9 | 4.4 | 20.8 | 26.2 | 27.2 |
| E013 | chr9 | 116610899 | 116613605 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.144 | 0.853 | NA | NA | NA | 0.9 | 0.0 | 0.0 | 2.0 | 1.0 | 1.0 |
| E014 | chr9 | 116618323 | 116618472 | TRUE | OK | 15.9 | 0.0106 | 0.6716 | 0.9082 | 0.191 | 0.096 | 7.7 | 4.9 | 7.8 | 20.8 | 27.2 | 27.2 |
| E015 | chr9 | 116620309 | 116620443 | TRUE | OK | 13.0 | 0.0198 | 0.3554 | 0.7934 | 0.467 | 0.233 | 6.0 | 1.0 | 7.8 | 16.8 | 26.2 | 20.2 |
| E016 | chr9 | 116651527 | 116651793 | TRUE | OK | 14.6 | 0.0448 | 0.2026 | 0.7247 | 0.690 | 0.345 | 0.9 | 4.9 | 10.0 | 22.7 | 21.0 | 28.2 |
| E017 | chr9 | 116686696 | 116687065 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.197 | 0.9428 | NA | NA | NA | 0.0 | 1.0 | 0.0 | 0.0 | 2.1 | 1.0 |
| E018 | chr9 | 116687065 | 116687215 | TRUE | OK | 6.8 | 0.05 | 0.8556 | 0.9636 | -0.123 | -0.062 | 0.9 | 4.0 | 5.5 | 9.9 | 6.3 | 14.1 |
| E019 | chr9 | 116687215 | 116687221 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.5 | 0.118 | 0.07431 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 3.0 | 1.0 | 5.0 |
| E020 | chr9 | 116687221 | 116687234 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.0 | 0.266 | 0.2263 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 2.0 | 0.0 | 4.0 |
| E021 | chr9 | 116725770 | 116725950 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E022 | chr9 | 116728991 | 116729096 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.69 | 0.1185 | NA | NA | NA | 1.7 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E023 | chr9 | 116733398 | 116733523 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E024 | chr9 | 116805631 | 116805820 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.717 | 0.2281 | NA | NA | NA | 0.0 | 0.0 | 1.1 | 0.0 | 0.0 | 0.0 |
| E025 | chr9 | 116820616 | 116820783 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.717 | 0.2281 | NA | NA | NA | 0.0 | 0.0 | 1.1 | 0.0 | 0.0 | 0.0 |
| E026 | chr9 | 116863582 | 116863733 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.7 | 0.412 | 0.008001 | NA | NA | NA | 3.4 | 1.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E027 | chr9 | 116975207 | 116975333 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E028 | chr9 | 116975333 | 116975345 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E029 | chr9 | 116976113 | 116976188 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E030 | chr9 | 116976700 | 116976785 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E031 | chr9 | 117008091 | 117008259 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E032 | chr9 | 117039818 | 117039965 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E033 | chr9 | 117096043 | 117096151 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E034 | chr9 | 117141325 | 117141478 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E035 | chr9 | 117214357 | 117214553 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E036 | chr9 | 117214553 | 117214742 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E037 | chr9 | 117291325 | 117291513 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.69 | 0.1185 | NA | NA | NA | 1.7 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E038 | chr9 | 117414496 | 117415039 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.8 | 0.292 | 0.002756 | NA | NA | NA | 1.7 | 3.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E039 | chr9 | 117415039 | 117415070 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J040 | chr9 | 116425626 | 116425854 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J041 | chr9 | 116425626 | 116425875 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.299 | 0.1839 | NA | NA | NA | 1.7 | 0.0 | 0.0 | 0.0 | 0.0 | 1.0 |
| J042 | chr9 | 116426088 | 116440608 | TRUE | OK | 6.8 | 0.0553 | 0.1543 | 0.6919 | -0.902 | -0.451 | 2.6 | 5.9 | 5.5 | 5.9 | 14.7 | 6.1 |
| J043 | chr9 | 116437398 | 116437499 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J044 | chr9 | 116437591 | 116440608 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.166 | 0.7149 | NA | NA | NA | 0.0 | 0.0 | 1.1 | 1.0 | 1.0 | 0.0 |
| J045 | chr9 | 116440792 | 116442452 | TRUE | OK | 6.0 | 0.0309 | 0.8341 | 0.9575 | 0.159 | 0.079 | 4.3 | 1.0 | 2.2 | 4.9 | 13.6 | 10.1 |
| J046 | chr9 | 116442553 | 116487358 | TRUE | OK | 8.6 | 0.0189 | 0.1605 | 0.6964 | 0.855 | 0.427 | 1.7 | 3.0 | 3.3 | 13.8 | 18.9 | 11.1 |
| J047 | chr9 | 116487500 | 116618323 | TRUE | OK | 9.1 | 0.0175 | 0.5599 | 0.8695 | 0.337 | 0.168 | 2.6 | 4.9 | 3.3 | 12.8 | 11.5 | 19.2 |
| J048 | chr9 | 116613605 | 116618323 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.1 | 0.598 | 0.2142 | NA | NA | NA | 0.9 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J049 | chr9 | 116618472 | 116620309 | TRUE | OK | 8.7 | 0.0358 | 0.6496 | 0.9007 | 0.272 | 0.136 | 6.0 | 0.0 | 4.4 | 9.9 | 17.8 | 14.1 |
| J050 | chr9 | 116620443 | 116651527 | TRUE | OK | 6.4 | 0.0333 | 0.1415 | 0.6805 | 1.087 | 0.544 | 0.0 | 1.0 | 4.4 | 7.9 | 15.7 | 9.1 |
| J051 | chr9 | 116651793 | 116686696 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J052 | chr9 | 116651793 | 116687065 | TRUE | OK | 5.4 | 0.163 | 0.4394 | 0.8257 | -0.642 | -0.321 | 0.9 | 4.0 | 5.5 | 6.9 | 2.1 | 13.1 |
| J053 | chr9 | 116651793 | 116725770 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J054 | chr9 | 116725950 | 116728991 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J055 | chr9 | 116729096 | 116733398 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J056 | chr9 | 116733523 | 116805631 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J057 | chr9 | 116805820 | 116820616 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.2 | 0.509 | 0.2004 | NA | NA | NA | 0.0 | 0.0 | 1.1 | 0.0 | 0.0 | 0.0 |
| J058 | chr9 | 116820783 | 116863582 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J059 | chr9 | 116863733 | 116975207 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J060 | chr9 | 116975333 | 116976113 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J061 | chr9 | 116975345 | 116976113 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J062 | chr9 | 116976188 | 116976700 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J063 | chr9 | 116976785 | 117008091 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J064 | chr9 | 117008259 | 117039818 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J065 | chr9 | 117039965 | 117096043 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J066 | chr9 | 117096151 | 117141325 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J067 | chr9 | 117096151 | 117214357 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J068 | chr9 | 117141478 | 117214357 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J069 | chr9 | 117214742 | 117291325 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J070 | chr9 | 117291513 | 117414496 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.581 | 0.1001 | NA | NA | NA | 1.7 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| N071 | chr9 | 116687381 | 116697661 | TRUE | OK | 47.2 | 0.0337 | 5.248e-21 | 2.262e-17 | -29.167 | -6.705 | 45.2 | 46.5 | 47.7 | 52.4 | 41.9 | 49.4 |
| N072 | chr9 | 116687381 | 116697664 | TRUE | OK | 51.2 | 0.178 | 2.606e-11 | 3.055e-08 | -29.350 | -6.731 | 64.0 | 55.4 | 45.5 | 61.3 | 31.4 | 49.4 |
| N073 | chr9 | 116837982 | 116838955 | TRUE | OK | 18.1 | 0.013 | 1.572e-10 | 1.578e-07 | -2.714 | -1.355 | 15.4 | 13.9 | 23.3 | 12.8 | 18.9 | 24.2 |
| N074 | chr9 | 116839021 | 116841428 | TRUE | OK | 78.3 | 0.0117 | 2.791e-40 | 3.69e-36 | -29.631 | -6.646 | 101.5 | 91.1 | 124.2 | 47.4 | 46.1 | 59.5 |
| N075 | chr9 | 116841517 | 116842381 | TRUE | OK | 51.4 | 0.0564 | 2.507e-28 | 1.807e-24 | -30.452 | -7.193 | 84.4 | 57.4 | 66.5 | 38.5 | 23.0 | 38.3 |
| N076 | chr9 | 116845472 | 116847833 | TRUE | OK | 9.5 | 0.07 | 5.565e-09 | 3.776e-06 | -3.681 | -1.840 | 16.2 | 12.9 | 10.0 | 8.9 | 5.2 | 4.0 |
| N077 | chr9 | 116847891 | 116849979 | TRUE | OK | 8.5 | 0.373 | 0.003066 | 0.1544 | -3.543 | -1.771 | 4.3 | 19.8 | 11.1 | 8.9 | 5.2 | 2.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000148219.16 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |