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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr7 | 143390288 | 143390645 | TRUE | OK | 2148.6 | 0.00307 | 4.345e-18 | 1.384e-14 | 0.865 | 0.432 | 2528.0 | 1780.0 | 1781.0 | 2285.0 | 2393.0 | 2215.0 |
| E002 | chr7 | 143391097 | 143391128 | TRUE | OK | 169.5 | 0.00925 | 0.1492 | 0.6877 | 0.282 | 0.141 | 181.0 | 148.0 | 166.0 | 149.0 | 217.0 | 156.0 |
| E003 | chr7 | 143391128 | 143391391 | TRUE | OK | 124.9 | 0.00779 | 0.0292 | 0.4476 | -0.390 | -0.195 | 169.0 | 159.0 | 125.0 | 97.0 | 123.0 | 84.0 |
| E004 | chr7 | 143391391 | 143391410 | TRUE | OK | 112.3 | 0.00545 | 0.03234 | 0.4639 | -0.356 | -0.178 | 147.0 | 142.0 | 114.0 | 99.0 | 100.0 | 78.0 |
| E005 | chr7 | 143391410 | 143391535 | TRUE | OK | 177.0 | 0.00485 | 0.004311 | 0.1871 | -0.419 | -0.209 | 235.0 | 226.0 | 184.0 | 138.0 | 160.0 | 129.0 |
| E006 | chr7 | 143391619 | 143391775 | TRUE | OK | 188.1 | 0.00306 | 3.278e-06 | 0.0009769 | -0.599 | -0.299 | 276.0 | 244.0 | 200.0 | 140.0 | 154.0 | 129.0 |
| E007 | chr7 | 143393670 | 143393864 | TRUE | OK | 211.3 | 0.00218 | 7.15e-15 | 1.519e-11 | -0.909 | -0.454 | 323.0 | 274.0 | 269.0 | 137.0 | 134.0 | 146.0 |
| E008 | chr7 | 143394193 | 143394209 | TRUE | OK | 126.7 | 0.00594 | 1.661e-06 | 0.00055 | -0.815 | -0.407 | 192.0 | 144.0 | 173.0 | 73.0 | 86.0 | 99.0 |
| E009 | chr7 | 143394209 | 143394343 | TRUE | OK | 187.9 | 0.00407 | 6.819e-06 | 0.001806 | -0.625 | -0.313 | 264.0 | 226.0 | 230.0 | 119.0 | 144.0 | 154.0 |
| E010 | chr7 | 143394806 | 143394807 | TRUE | OK | 5.2 | 0.0317 | 0.8284 | 0.9558 | -0.158 | -0.079 | 11.0 | 3.0 | 4.0 | 5.0 | 5.0 | 4.0 |
| E011 | chr7 | 143394807 | 143395014 | TRUE | OK | 228.5 | 0.00283 | 6.228e-07 | 0.0002419 | -0.602 | -0.301 | 328.0 | 272.0 | 271.0 | 159.0 | 164.0 | 191.0 |
| E012 | chr7 | 143395120 | 143395182 | TRUE | OK | 161.5 | 0.00454 | 0.0001669 | 0.02265 | -0.557 | -0.279 | 240.0 | 186.0 | 186.0 | 112.0 | 111.0 | 146.0 |
| E013 | chr7 | 143395318 | 143395504 | TRUE | OK | 211.6 | 0.00589 | 0.0003847 | 0.04143 | -0.540 | -0.270 | 293.0 | 249.0 | 251.0 | 136.0 | 163.0 | 188.0 |
| E014 | chr7 | 143395504 | 143395601 | TRUE | OK | 11.0 | 0.024 | 0.06997 | 0.5826 | -0.812 | -0.406 | 15.0 | 12.0 | 17.0 | 3.0 | 8.0 | 11.0 |
| E015 | chr7 | 143396384 | 143396510 | TRUE | OK | 171.7 | 0.00561 | 0.00516 | 0.2059 | -0.432 | -0.216 | 228.0 | 220.0 | 180.0 | 119.0 | 143.0 | 150.0 |
| E016 | chr7 | 143396510 | 143396681 | TRUE | OK | 5.7 | 0.0685 | 0.1916 | 0.7183 | -0.924 | -0.462 | 8.0 | 13.0 | 3.0 | 3.0 | 5.0 | 3.0 |
| E017 | chr7 | 143397303 | 143397362 | TRUE | OK | 115.8 | 0.00388 | 0.1297 | 0.6695 | -0.230 | -0.115 | 147.0 | 141.0 | 113.0 | 91.0 | 103.0 | 106.0 |
| E018 | chr7 | 143397480 | 143397560 | TRUE | OK | 7.2 | 0.046 | 0.8686 | 0.9673 | -0.070 | -0.035 | 10.0 | 7.0 | 7.0 | 12.0 | 3.0 | 5.0 |
| E019 | chr7 | 143397560 | 143397657 | TRUE | OK | 136.4 | 0.00302 | 0.0482 | 0.5272 | -0.273 | -0.137 | 176.0 | 163.0 | 139.0 | 122.0 | 111.0 | 115.0 |
| E020 | chr7 | 143397919 | 143398070 | TRUE | OK | 161.3 | 0.00678 | 0.0002884 | 0.03393 | -0.608 | -0.304 | 225.0 | 203.0 | 189.0 | 129.0 | 99.0 | 133.0 |
| E021 | chr7 | 143398320 | 143398448 | TRUE | OK | 168.0 | 0.00821 | 9.33e-07 | 0.0003379 | -0.881 | -0.441 | 273.0 | 202.0 | 213.0 | 114.0 | 88.0 | 133.0 |
| E022 | chr7 | 143398448 | 143398600 | TRUE | OK | 13.1 | 0.0295 | 0.0871 | 0.6157 | -0.760 | -0.380 | 19.0 | 12.0 | 21.0 | 6.0 | 7.0 | 14.0 |
| E023 | chr7 | 143398600 | 143398712 | TRUE | OK | 136.2 | 0.00647 | 7.858e-08 | 4.003e-05 | -0.933 | -0.466 | 247.0 | 160.0 | 162.0 | 91.0 | 73.0 | 101.0 |
| E024 | chr7 | 143398712 | 143398945 | TRUE | OK | 140.3 | 0.00919 | 0.001297 | 0.09229 | -0.622 | -0.311 | 242.0 | 164.0 | 141.0 | 112.0 | 85.0 | 116.0 |
| E025 | chr7 | 143399257 | 143399413 | TRUE | OK | 154.6 | 0.00485 | 0.002042 | 0.1226 | -0.475 | -0.238 | 242.0 | 164.0 | 170.0 | 132.0 | 103.0 | 131.0 |
| E026 | chr7 | 143399650 | 143400053 | TRUE | OK | 248.0 | 0.00679 | 6.221e-05 | 0.0106 | -0.647 | -0.324 | 431.0 | 277.0 | 260.0 | 195.0 | 162.0 | 194.0 |
| E027 | chr7 | 143400825 | 143401323 | TRUE | OK | 68.1 | 0.00307 | 0.8728 | 0.9684 | -0.029 | -0.015 | 87.0 | 69.0 | 66.0 | 57.0 | 67.0 | 66.0 |
| E028 | chr7 | 143401323 | 143401605 | TRUE | OK | 274.9 | 0.00463 | 2.437e-09 | 1.816e-06 | -0.821 | -0.411 | 446.0 | 313.0 | 346.0 | 217.0 | 179.0 | 172.0 |
| E029 | chr7 | 143407610 | 143407650 | TRUE | OK | 148.8 | 0.00841 | 1.34e-05 | 0.003096 | -0.807 | -0.403 | 240.0 | 164.0 | 195.0 | 123.0 | 86.0 | 97.0 |
| E030 | chr7 | 143407650 | 143407678 | TRUE | OK | 135.3 | 0.0131 | 0.0001326 | 0.01898 | -0.831 | -0.416 | 203.0 | 165.0 | 178.0 | 115.0 | 69.0 | 91.0 |
| E031 | chr7 | 143408723 | 143408805 | TRUE | OK | 117.0 | 0.011 | 0.0001093 | 0.01636 | -0.807 | -0.404 | 179.0 | 142.0 | 150.0 | 99.0 | 60.0 | 81.0 |
| E032 | chr7 | 143408805 | 143408856 | TRUE | OK | 80.4 | 0.0154 | 0.001199 | 0.08785 | -0.800 | -0.400 | 117.0 | 101.0 | 105.0 | 67.0 | 37.0 | 61.0 |
| J033 | chr7 | 143390645 | 143391097 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.3 | 0.651 | 0.3284 | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 2.0 |
| J034 | chr7 | 143391535 | 143391619 | TRUE | OK | 110.6 | 0.00547 | 0.007677 | 0.2528 | -0.444 | -0.222 | 147.0 | 140.0 | 119.0 | 84.0 | 105.0 | 74.0 |
| J035 | chr7 | 143391775 | 143393670 | TRUE | OK | 91.3 | 0.0022 | 7.01e-12 | 8.959e-09 | -1.048 | -0.524 | 149.0 | 125.0 | 115.0 | 54.0 | 50.0 | 63.0 |
| J036 | chr7 | 143393864 | 143394193 | TRUE | OK | 109.2 | 0.00468 | 8.936e-07 | 0.0003255 | -0.813 | -0.407 | 168.0 | 120.0 | 151.0 | 64.0 | 77.0 | 81.0 |
| J037 | chr7 | 143394343 | 143394807 | TRUE | OK | 111.9 | 0.00663 | 0.0007813 | 0.06667 | -0.594 | -0.297 | 149.0 | 146.0 | 131.0 | 67.0 | 90.0 | 93.0 |
| J038 | chr7 | 143394343 | 143395120 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.162 | 0.5233 | NA | NA | NA | 0.0 | 0.0 | 1.0 | 1.0 | 1.0 | 0.0 |
| J039 | chr7 | 143395014 | 143395120 | TRUE | OK | 107.4 | 0.00314 | 7.899e-05 | 0.01273 | -0.599 | -0.300 | 176.0 | 115.0 | 123.0 | 79.0 | 71.0 | 91.0 |
| J040 | chr7 | 143395182 | 143395318 | TRUE | OK | 125.4 | 0.00889 | 0.0003796 | 0.04104 | -0.674 | -0.337 | 185.0 | 154.0 | 150.0 | 74.0 | 83.0 | 115.0 |
| J041 | chr7 | 143395504 | 143396384 | TRUE | OK | 91.9 | 0.00455 | 0.03442 | 0.4742 | -0.354 | -0.177 | 113.0 | 109.0 | 106.0 | 64.0 | 81.0 | 81.0 |
| J042 | chr7 | 143396510 | 143397303 | TRUE | OK | 97.0 | 0.00474 | 0.1292 | 0.6688 | -0.252 | -0.126 | 124.0 | 119.0 | 95.0 | 70.0 | 87.0 | 92.0 |
| J043 | chr7 | 143397362 | 143397560 | TRUE | OK | 88.7 | 0.00714 | 0.153 | 0.6909 | -0.267 | -0.134 | 109.0 | 114.0 | 87.0 | 63.0 | 84.0 | 79.0 |
| J044 | chr7 | 143397657 | 143397919 | TRUE | OK | 86.0 | 0.00869 | 0.0637 | 0.569 | -0.373 | -0.186 | 114.0 | 101.0 | 95.0 | 84.0 | 54.0 | 73.0 |
| J045 | chr7 | 143398070 | 143398320 | TRUE | OK | 97.6 | 0.00641 | 4.247e-05 | 0.007759 | -0.747 | -0.374 | 143.0 | 127.0 | 118.0 | 75.0 | 53.0 | 77.0 |
| J046 | chr7 | 143398448 | 143398600 | TRUE | OK | 107.1 | 0.00874 | 5.976e-07 | 0.0002338 | -0.992 | -0.496 | 192.0 | 127.0 | 134.0 | 65.0 | 53.0 | 84.0 |
| J047 | chr7 | 143398945 | 143399257 | TRUE | OK | 68.1 | 0.00664 | 0.281 | 0.7631 | -0.221 | -0.111 | 105.0 | 74.0 | 59.0 | 56.0 | 52.0 | 70.0 |
| J048 | chr7 | 143399413 | 143399650 | TRUE | OK | 100.1 | 0.00524 | 0.0002103 | 0.02705 | -0.646 | -0.323 | 165.0 | 103.0 | 122.0 | 82.0 | 62.0 | 76.0 |
| J049 | chr7 | 143400053 | 143401323 | TRUE | OK | 75.6 | 0.00925 | 0.0002207 | 0.02806 | -0.812 | -0.406 | 148.0 | 86.0 | 77.0 | 57.0 | 47.0 | 51.0 |
| J050 | chr7 | 143401605 | 143407610 | TRUE | OK | 133.0 | 0.00793 | 4.233e-06 | 0.001204 | -0.856 | -0.428 | 215.0 | 142.0 | 184.0 | 104.0 | 79.0 | 84.0 |
| J051 | chr7 | 143407678 | 143408723 | TRUE | OK | 112.8 | 0.0112 | 0.0001423 | 0.02004 | -0.801 | -0.401 | 174.0 | 137.0 | 143.0 | 97.0 | 58.0 | 77.0 |
| N052 | chr7 | 143389977 | 143390577 | TRUE | OK | 1458.7 | 0.00352 | 5.955e-08 | 3.169e-05 | 0.570 | 0.285 | 1750.0 | 1229.0 | 1201.0 | 1614.0 | 1519.0 | 1512.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000146904.9 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |