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| binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Raw Counts | |||||
| MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
| E001 | chr9 | 35658874 | 35658876 | TRUE | OK | 9.8 | 0.0172 | 0.7629 | 0.9368 | -0.120 | -0.060 | 11.0 | 9.0 | 9.0 | 9.0 | 15.0 | 6.0 |
| E002 | chr9 | 35658876 | 35659173 | TRUE | OK | 104.7 | 0.0025 | 0.746 | 0.9315 | -0.047 | -0.023 | 123.0 | 94.0 | 86.0 | 106.0 | 114.0 | 110.0 |
| E003 | chr9 | 35659342 | 35660093 | TRUE | OK | 96.2 | 0.00542 | 0.622 | 0.8911 | -0.084 | -0.042 | 91.0 | 95.0 | 93.0 | 111.0 | 101.0 | 86.0 |
| E004 | chr9 | 35660093 | 35660967 | TRUE | OK | 1102.9 | 0.00559 | 0.4584 | 0.8324 | 0.107 | 0.054 | 1151.0 | 958.0 | 940.0 | 1120.0 | 1364.0 | 1100.0 |
| E005 | chr9 | 35660967 | 35661518 | TRUE | OK | 484.7 | 0.00178 | 0.5696 | 0.8731 | 0.055 | 0.027 | 513.0 | 419.0 | 418.0 | 504.0 | 575.0 | 488.0 |
| E006 | chr9 | 35661518 | 35661712 | TRUE | OK | 259.7 | 0.0026 | 0.0308 | 0.4565 | -0.247 | -0.124 | 268.0 | 266.0 | 259.0 | 246.0 | 270.0 | 251.0 |
| E007 | chr9 | 35661712 | 35661837 | TRUE | OK | 283.6 | 0.00145 | 0.0005833 | 0.05508 | -0.335 | -0.168 | 330.0 | 281.0 | 282.0 | 272.0 | 272.0 | 273.0 |
| E008 | chr9 | 35661837 | 35662002 | TRUE | OK | 302.2 | 0.00617 | 0.0006748 | 0.06058 | -0.513 | -0.256 | 394.0 | 291.0 | 319.0 | 299.0 | 245.0 | 281.0 |
| E009 | chr9 | 35662178 | 35662227 | TRUE | OK | 196.4 | 0.00585 | 0.0006649 | 0.06006 | -0.529 | -0.265 | 252.0 | 195.0 | 212.0 | 194.0 | 153.0 | 182.0 |
| E010 | chr9 | 35662227 | 35662267 | TRUE | OK | 191.2 | 0.00681 | 0.005149 | 0.2057 | -0.459 | -0.230 | 252.0 | 189.0 | 190.0 | 186.0 | 149.0 | 193.0 |
| E011 | chr9 | 35662511 | 35662644 | TRUE | OK | 251.2 | 0.00833 | 0.006077 | 0.2243 | -0.474 | -0.237 | 354.0 | 245.0 | 235.0 | 230.0 | 205.0 | 258.0 |
| E012 | chr9 | 35662644 | 35662741 | TRUE | OK | 224.9 | 0.0123 | 0.003694 | 0.1713 | -0.584 | -0.292 | 320.0 | 243.0 | 209.0 | 185.0 | 169.0 | 242.0 |
| E013 | chr9 | 35662945 | 35662966 | TRUE | OK | 174.4 | 0.0149 | 0.002411 | 0.1351 | -0.673 | -0.336 | 242.0 | 210.0 | 163.0 | 148.0 | 116.0 | 182.0 |
| E014 | chr9 | 35662966 | 35663074 | TRUE | OK | 219.0 | 0.0145 | 0.002902 | 0.1494 | -0.643 | -0.321 | 306.0 | 254.0 | 204.0 | 202.0 | 147.0 | 220.0 |
| E015 | chr9 | 35663074 | 35663321 | TRUE | OK | 77.3 | 0.00968 | 0.0001026 | 0.01563 | -0.833 | -0.416 | 110.0 | 103.0 | 74.0 | 64.0 | 49.0 | 71.0 |
| E016 | chr9 | 35663321 | 35663392 | TRUE | OK | 239.9 | 0.00503 | 4.966e-05 | 0.008829 | -0.580 | -0.290 | 306.0 | 261.0 | 248.0 | 236.0 | 185.0 | 216.0 |
| E017 | chr9 | 35664007 | 35664126 | TRUE | OK | 245.2 | 0.00662 | 0.004676 | 0.1955 | -0.444 | -0.222 | 311.0 | 261.0 | 231.0 | 256.0 | 196.0 | 231.0 |
| E018 | chr9 | 35664371 | 35664492 | TRUE | OK | 268.2 | 0.0152 | 0.00494 | 0.2015 | -0.607 | -0.303 | 352.0 | 304.0 | 263.0 | 292.0 | 185.0 | 232.0 |
| E019 | chr9 | 35664755 | 35664828 | TRUE | OK | 193.7 | 0.0205 | 0.04178 | 0.5057 | -0.510 | -0.255 | 259.0 | 226.0 | 167.0 | 213.0 | 129.0 | 185.0 |
| E020 | chr9 | 35664828 | 35664850 | TRUE | OK | 166.5 | 0.0139 | 0.01016 | 0.2904 | -0.559 | -0.279 | 216.0 | 203.0 | 149.0 | 174.0 | 117.0 | 153.0 |
| E021 | chr9 | 35665031 | 35665187 | TRUE | OK | 167.8 | 0.0174 | 0.01059 | 0.2953 | -0.606 | -0.303 | 221.0 | 206.0 | 153.0 | 173.0 | 109.0 | 158.0 |
| E022 | chr9 | 35665187 | 35665192 | TRUE | OK | 26.0 | 0.00786 | 0.01178 | 0.3098 | -0.694 | -0.347 | 35.0 | 31.0 | 27.0 | 25.0 | 15.0 | 25.0 |
| E023 | chr9 | 35665192 | 35665195 | TRUE | OK | 15.5 | 0.0267 | 0.1315 | 0.6713 | -0.613 | -0.306 | 21.0 | 13.0 | 20.0 | 17.0 | 7.0 | 16.0 |
| E024 | chr9 | 35669583 | 35669708 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| E025 | chr9 | 35673810 | 35675866 | TRUE | OK | 243.5 | 0.00347 | 3.645e-88 | 1.335e-83 | 2.888 | 1.444 | 69.0 | 59.0 | 47.0 | 396.0 | 477.0 | 397.0 |
| J026 | chr9 | 35659173 | 35660093 | TRUE | OK | 46.4 | 0.0035 | 0.4832 | 0.8416 | -0.140 | -0.070 | 55.0 | 50.0 | 34.0 | 47.0 | 51.0 | 44.0 |
| J027 | chr9 | 35660967 | 35661712 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.8 | 0.0319 | 0.3685 | NA | NA | NA | 3.0 | 4.0 | 3.0 | 3.0 | 1.0 | 3.0 |
| J028 | chr9 | 35662002 | 35662178 | TRUE | OK | 158.9 | 0.00826 | 0.004789 | 0.198 | -0.508 | -0.254 | 197.0 | 159.0 | 174.0 | 159.0 | 117.0 | 154.0 |
| J029 | chr9 | 35662227 | 35662511 | FALSE | LOW_COUNTS_INDEP_FILTER | 0.5 | 0.166 | 0.5296 | NA | NA | NA | 1.0 | 0.0 | 1.0 | 0.0 | 0.0 | 1.0 |
| J030 | chr9 | 35662267 | 35662511 | TRUE | OK | 138.3 | 0.00365 | 0.003789 | 0.1738 | -0.419 | -0.209 | 181.0 | 133.0 | 138.0 | 136.0 | 114.0 | 136.0 |
| J031 | chr9 | 35662267 | 35663321 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.4 | 0.298 | 0.2552 | NA | NA | NA | 0.0 | 1.0 | 2.0 | 7.0 | 4.0 | 0.0 |
| J032 | chr9 | 35662741 | 35662945 | TRUE | OK | 132.0 | 0.0275 | 0.03344 | 0.4695 | -0.613 | -0.307 | 198.0 | 150.0 | 114.0 | 108.0 | 83.0 | 153.0 |
| J033 | chr9 | 35662741 | 35663321 | TRUE | OK | 17.8 | 0.00649 | 0.6406 | 0.8981 | -0.144 | -0.072 | 21.0 | 15.0 | 17.0 | 14.0 | 19.0 | 21.0 |
| J034 | chr9 | 35663074 | 35663321 | TRUE | OK | 97.5 | 0.00888 | 0.005248 | 0.2079 | -0.553 | -0.277 | 130.0 | 107.0 | 96.0 | 103.0 | 68.0 | 88.0 |
| J035 | chr9 | 35663392 | 35664007 | TRUE | OK | 169.6 | 0.00229 | 1.861e-05 | 0.004042 | -0.526 | -0.263 | 211.0 | 188.0 | 171.0 | 169.0 | 141.0 | 146.0 |
| J036 | chr9 | 35664126 | 35664371 | TRUE | OK | 143.0 | 0.00694 | 0.002816 | 0.147 | -0.513 | -0.257 | 179.0 | 148.0 | 152.0 | 152.0 | 109.0 | 125.0 |
| J037 | chr9 | 35664492 | 35664755 | TRUE | OK | 144.3 | 0.0245 | 0.1098 | 0.6483 | -0.442 | -0.221 | 196.0 | 169.0 | 114.0 | 169.0 | 100.0 | 132.0 |
| J038 | chr9 | 35664492 | 35665031 | FALSE | LOW_COUNTS_INDEP_FILTER | 1.4 | 0.0769 | 0.4191 | NA | NA | NA | 1.0 | 1.0 | 3.0 | 0.0 | 1.0 | 2.0 |
| J039 | chr9 | 35664850 | 35665031 | TRUE | OK | 142.2 | 0.0144 | 0.006715 | 0.2363 | -0.606 | -0.303 | 183.0 | 178.0 | 131.0 | 148.0 | 97.0 | 127.0 |
| J040 | chr9 | 35664850 | 35669583 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| J041 | chr9 | 35669708 | 35673810 | FALSE | ALL_ZERO | 0.0 | NA | NA | NA | NA | NA | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 | 0.0 |
| N042 | chr9 | 35658727 | 35660400 | TRUE | OK | 295.5 | 0.0139 | 0.8844 | 0.9719 | -0.008 | -0.004 | 341.0 | 241.0 | 260.0 | 301.0 | 394.0 | 243.0 |
| N043 | chr9 | 35660461 | 35660556 | TRUE | OK | 340.7 | 0.00109 | 0.8671 | 0.9669 | -0.014 | -0.007 | 386.0 | 307.0 | 280.0 | 354.0 | 380.0 | 350.0 |
| N044 | chr9 | 35660647 | 35660745 | TRUE | OK | 258.3 | 0.00446 | 0.7536 | 0.9339 | -0.038 | -0.019 | 302.0 | 232.0 | 211.0 | 231.0 | 296.0 | 288.0 |
| N045 | chr9 | 35660647 | 35660770 | TRUE | OK | 19.4 | 0.008 | 0.2865 | 0.7652 | 0.331 | 0.166 | 14.0 | 18.0 | 16.0 | 27.0 | 18.0 | 23.0 |
| N046 | chr9 | 35660858 | 35660939 | TRUE | OK | 75.1 | 0.0109 | 0.6116 | 0.8875 | -0.104 | -0.052 | 96.0 | 72.0 | 55.0 | 64.0 | 98.0 | 70.0 |
| N047 | chr9 | 35674362 | 35675537 | TRUE | OK | 61.1 | 0.00427 | 4.018e-35 | 3.681e-31 | 2.818 | 1.409 | 21.0 | 12.0 | 9.0 | 115.0 | 113.0 | 94.0 |
| N048 | chr9 | 35675567 | 35675760 | TRUE | OK | 64.9 | 0.0172 | 8.197e-25 | 4.68e-21 | 3.260 | 1.630 | 17.0 | 9.0 | 8.0 | 119.0 | 144.0 | 88.0 |
| Color Codes | |||||
|---|---|---|---|---|---|
| NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
| Gene ENSG00000137135.18 | |||||||
|---|---|---|---|---|---|---|---|
| expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
| PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
| TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |