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binID | chr | start | end | testable | status | baseMean | dispersion | pvalue | padjust | log2FC (mutant/control) | log2FCvst (mutant/control) | Normalized Coverage Counts | |||||
MCF10A-parental-DMSO-1 | MCF10A-parental-DMSO-2 | MCF10A-parental-DMSO-3 | MCF10A-KI-DMSO-7 | MCF10A-KI-DMSO-8 | MCF10A-KI-DMSO-9 | ||||||||||||
E001 | chr9 | 110243809 | 110243810 | FALSE | LOW_COUNTS_INDEP_FILTER | 2.1 | 0.222 | 0.9236 | NA | NA | NA | 0.0 | 1.0 | 4.4 | 1.0 | 2.1 | 4.0 |
E002 | chr9 | 110243810 | 110244018 | TRUE | OK | 382.3 | 0.0028 | 0.04409 | 0.5143 | -0.207 | -0.103 | 349.7 | 325.6 | 351.4 | 352.8 | 573.0 | 340.9 |
E003 | chr9 | 110244018 | 110244219 | TRUE | OK | 17580.4 | 0.00723 | 0.2567 | 0.7519 | 0.198 | 0.099 | 13946.9 | 14577.8 | 13435.5 | 17270.3 | 28979.8 | 17272.0 |
E004 | chr9 | 110244777 | 110244843 | TRUE | OK | 22088.7 | 0.00358 | 0.4703 | 0.8368 | 0.093 | 0.046 | 17934.6 | 18412.3 | 17758.9 | 22062.5 | 34259.3 | 22104.7 |
E005 | chr9 | 110244843 | 110245116 | TRUE | OK | 508.9 | 0.00253 | 4.151e-28 | 2.943e-24 | 1.127 | 0.564 | 219.2 | 267.2 | 267.2 | 697.7 | 959.5 | 642.5 |
E006 | chr9 | 110250819 | 110250879 | TRUE | OK | 22222.3 | 0.00341 | 0.2844 | 0.7644 | 0.105 | 0.052 | 18279.2 | 18654.8 | 17418.5 | 22954.9 | 33426.5 | 22600.0 |
E007 | chr9 | 110251357 | 110251462 | TRUE | OK | 23917.6 | 0.0108 | 0.7046 | 0.9187 | -0.110 | -0.055 | 20171.1 | 20602.8 | 19347.4 | 25068.8 | 33537.6 | 24777.8 |
E008 | chr9 | 110256411 | 110256466 | TRUE | OK | 15013.3 | 0.0109 | 0.1875 | 0.7155 | -0.271 | -0.135 | 13443.7 | 13335.6 | 12748.2 | 15986.5 | 19061.8 | 15503.8 |
E009 | chr9 | 110256466 | 110256507 | TRUE | OK | 10128.9 | 0.013 | 0.1046 | 0.6412 | -0.348 | -0.174 | 9480.8 | 9372.4 | 8786.3 | 10955.1 | 11848.6 | 10330.1 |
J010 | chr9 | 110244219 | 110244777 | TRUE | OK | 14620.7 | 0.00471 | 0.5047 | 0.8495 | 0.106 | 0.053 | 11883.6 | 12189.4 | 11330.4 | 14273.8 | 23722.2 | 14324.6 |
J011 | chr9 | 110244843 | 110250819 | TRUE | OK | 18637.1 | 0.00167 | 0.4359 | 0.8243 | 0.063 | 0.032 | 15249.4 | 15531.0 | 14942.1 | 18860.4 | 28481.2 | 18758.8 |
J012 | chr9 | 110244843 | 110251357 | TRUE | OK | 4.5 | 0.0305 | 0.8727 | 0.9684 | 0.099 | 0.050 | 4.3 | 3.0 | 3.3 | 7.9 | 6.3 | 2.0 |
J013 | chr9 | 110250879 | 110251357 | TRUE | OK | 17476.0 | 0.00387 | 0.3885 | 0.8055 | 0.081 | 0.040 | 14604.6 | 14560.0 | 13522.0 | 18433.5 | 25815.2 | 17920.6 |
J014 | chr9 | 110251462 | 110256411 | TRUE | OK | 14744.2 | 0.011 | 0.203 | 0.725 | -0.264 | -0.132 | 13211.7 | 13071.3 | 12509.9 | 15705.8 | 18707.7 | 15258.6 |
N015 | chr9 | 110244843 | 110250150 | TRUE | OK | 15.1 | 0.0239 | 0.9571 | 0.9905 | 0.049 | 0.025 | 16.2 | 8.9 | 11.1 | 9.9 | 29.3 | 15.1 |
N016 | chr9 | 110250190 | 110250819 | TRUE | OK | 15.6 | 0.0213 | 0.819 | 0.9531 | 0.094 | 0.047 | 17.9 | 10.9 | 7.8 | 13.8 | 29.3 | 14.1 |
Color Codes | |||||
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NO TEST | p > 0.05 | p < 0.05 | p < 0.005 | p < 5e-04 | p < 5e-05 |
Gene ENSG00000136810.13 | |||||||
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expr | exprTX | normCt | normCtTX | rExpr | rExprTX | rawCt | rawCtTX |
PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT | PLOT |
TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE | TABLE |